View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_1D_low_6 (Length: 358)
Name: NF0154_1D_low_6
Description: NF0154_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_1D_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 934221 - 934563
Alignment:
| Q |
1 |
tgtgcatgtttgcacatgaaagttgcagttctcatttccagaacatacacttgtaaaagctatctgagagttgataatgatgtatttatcttccatgctg |
100 |
Q |
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| T |
934221 |
tgtgcatgtttgcacatgaaagttgcagttctcatttccagaacatacacttgtaaaagctatctgagagttgataatgatgtatttatcttccatgctg |
934320 |
T |
|
| Q |
101 |
cgatactgcaattaatgtctgaaattttgaattaataacagtaaatttaattatcacaagcatccaggtcccggataccttggttgtattttgaaaagga |
200 |
Q |
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| T |
934321 |
cgatactgcaattaatgtctgaaattttgaattaataacagtaaatttaattatcacaagcatccaggtcccggataccttggttgtattttgaaaggga |
934420 |
T |
|
| Q |
201 |
aaattttgaactatatctttgtatctaatttacatgcatacattatgaatttttataattttggcctgctcttatatgcagaacaaggatgaagatctta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
934421 |
aaattttgaactatatctttgtatctaatttacatgcatacattatgaatttttataattttggcctgctcttatatgcagaacaaggatgaagatctta |
934520 |
T |
|
| Q |
301 |
cacaatatcaggtagccaaggaagaattgcatgaggatgatgt |
343 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
934521 |
cacaatatcaggtagccaaggaagaattgcatgaggatgatgt |
934563 |
T |
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