View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_1D_low_9 (Length: 282)

Name: NF0154_1D_low_9
Description: NF0154_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_1D_low_9
NF0154_1D_low_9
[»] chr4 (22 HSPs)
chr4 (15-282)||(4303193-4303460)
chr4 (15-282)||(29123429-29123697)
chr4 (15-282)||(22340543-22340810)
chr4 (34-279)||(18116392-18116637)
chr4 (15-191)||(17826772-17826948)
chr4 (98-280)||(15705634-15705816)
chr4 (21-282)||(8110882-8111143)
chr4 (38-279)||(23158164-23158405)
chr4 (38-279)||(36279217-36279458)
chr4 (38-246)||(51872685-51872893)
chr4 (13-279)||(12915758-12916024)
chr4 (15-282)||(3621466-3621733)
chr4 (34-246)||(15649077-15649289)
chr4 (188-282)||(17838698-17838792)
chr4 (42-123)||(50693772-50693853)
chr4 (42-123)||(36951324-36951405)
chr4 (42-123)||(17469142-17469223)
chr4 (187-279)||(6614197-6614289)
chr4 (58-130)||(24059759-24059831)
chr4 (181-252)||(29192472-29192543)
chr4 (179-276)||(36951171-36951268)
chr4 (179-234)||(50693909-50693964)
[»] chr1 (12 HSPs)
chr1 (15-282)||(49369731-49369998)
chr1 (34-279)||(41342818-41343063)
chr1 (38-279)||(10003898-10004139)
chr1 (38-222)||(27029976-27030160)
chr1 (183-282)||(5557231-5557330)
chr1 (58-145)||(24545091-24545178)
chr1 (34-277)||(28520847-28521090)
chr1 (64-123)||(37668976-37669035)
chr1 (59-126)||(26996083-26996150)
chr1 (181-276)||(37668823-37668918)
chr1 (83-132)||(49869309-49869358)
chr1 (53-133)||(48710109-48710189)
[»] chr3 (16 HSPs)
chr3 (15-282)||(8595221-8595488)
chr3 (15-282)||(42462684-42462951)
chr3 (35-282)||(23603227-23603473)
chr3 (15-281)||(48547519-48547785)
chr3 (26-271)||(23571623-23571868)
chr3 (38-279)||(3514651-3514892)
chr3 (34-279)||(17153817-17154062)
chr3 (38-271)||(9819035-9819268)
chr3 (71-279)||(53152132-53152340)
chr3 (42-145)||(16664077-16664180)
chr3 (15-279)||(42459294-42459547)
chr3 (42-123)||(52196409-52196490)
chr3 (50-268)||(39632858-39633076)
chr3 (59-123)||(10754186-10754250)
chr3 (179-234)||(16663988-16664043)
chr3 (181-237)||(10754072-10754128)
[»] chr2 (10 HSPs)
chr2 (33-282)||(38938436-38938685)
chr2 (38-279)||(30275856-30276097)
chr2 (23-279)||(23384810-23385066)
chr2 (23-279)||(32349841-32350097)
chr2 (34-246)||(21963408-21963620)
chr2 (34-200)||(21964639-21964805)
chr2 (76-279)||(27914653-27914856)
chr2 (42-123)||(1258584-1258665)
chr2 (43-221)||(22300788-22300966)
chr2 (179-252)||(1258455-1258528)
[»] scaffold0032 (1 HSPs)
scaffold0032 (15-282)||(58387-58654)
[»] chr5 (11 HSPs)
chr5 (15-280)||(11265991-11266256)
chr5 (21-282)||(27891662-27891923)
chr5 (34-279)||(5824979-5825224)
chr5 (23-279)||(6678577-6678831)
chr5 (46-255)||(29150296-29150504)
chr5 (38-234)||(31962686-31962882)
chr5 (130-279)||(10462243-10462392)
chr5 (42-123)||(29322916-29322997)
chr5 (42-123)||(38931892-38931973)
chr5 (45-123)||(8896369-8896447)
chr5 (179-252)||(8895378-8895451)
[»] scaffold0041 (1 HSPs)
scaffold0041 (34-282)||(74262-74510)
[»] chr7 (19 HSPs)
chr7 (34-282)||(40891774-40892022)
chr7 (34-282)||(586748-586996)
chr7 (23-279)||(37075589-37075845)
chr7 (38-279)||(12121553-12121794)
chr7 (38-279)||(24819664-24819905)
chr7 (38-279)||(36575396-36575637)
chr7 (15-282)||(20705483-20705750)
chr7 (15-282)||(20873527-20873794)
chr7 (23-279)||(9403131-9403380)
chr7 (34-246)||(34981847-34982059)
chr7 (42-132)||(27987585-27987675)
chr7 (42-123)||(22865766-22865847)
chr7 (42-123)||(47548969-47549050)
chr7 (42-123)||(47553412-47553493)
chr7 (47-126)||(27869020-27869099)
chr7 (42-132)||(18815411-18815501)
chr7 (53-145)||(8457213-8457305)
chr7 (45-279)||(5196600-5196834)
chr7 (170-234)||(27868912-27868976)
[»] chr8 (7 HSPs)
chr8 (38-279)||(26077740-26077981)
chr8 (42-279)||(29532324-29532561)
chr8 (21-214)||(31423238-31423431)
chr8 (42-279)||(26390260-26390496)
chr8 (42-123)||(10801698-10801779)
chr8 (182-246)||(2959748-2959812)
chr8 (239-282)||(31423430-31423473)
[»] chr6 (8 HSPs)
chr6 (15-238)||(667283-667496)
chr6 (38-246)||(18295410-18295618)
chr6 (15-282)||(28604878-28605145)
chr6 (38-279)||(2894204-2894445)
chr6 (42-278)||(7218368-7218604)
chr6 (34-216)||(17227966-17228148)
chr6 (99-222)||(9759578-9759701)
chr6 (42-123)||(5391535-5391616)
[»] scaffold0003 (1 HSPs)
scaffold0003 (42-256)||(224744-224958)
[»] scaffold0289 (1 HSPs)
scaffold0289 (42-145)||(11166-11269)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 282
Target Start/End: Original strand, 4303193 - 4303460
Alignment:
Q  15 tggacatcaatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 114  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  4303193 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggcgtctttttctgaatagact 4303292  T
Q  115 tgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttt 214  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4303293 tgctacaaaggacaatcttcgcaagaggaatatccttcatgctacagattcttcttgtgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 4303392  T
Q  215 tttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  4303393 tttcaatgtgattattatggtcgattatgactcttgatatcgaattggcttggttttgttacggtgtt 4303460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 282
Target Start/End: Original strand, 29123429 - 29123697
Alignment:
Q  15 tggacatcaatatcactatagagtttgatcaatttttatggcttaaagcggtt-cccttaaaagttaacatttttgtttggcgtctctttctgaatagac 113  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29123429 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggtttcccttaaaagttaacatttttgtttggcgtctctttctgaatagac 29123528  T
Q  114 ttgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgtt 213  Q
    |||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  29123529 ttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagagaccatttgtt 29123628  T
Q  214 ttttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    |||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| ||||||||||    
T  29123629 ttttcaatgtgatttttatggtcgattatggctcttggtttcgaattggcttggttttgttacggtgtt 29123697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 22340810 - 22340543
Alignment:
Q  15 tggacatcaatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 114  Q
    |||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22340810 tggacatcaatatcactgcagtgtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctaaatagact 22340711  T
Q  115 tgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttt 214  Q
    ||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| || |||||||||    
T  22340710 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgtggccttgtgtggtaaggaggaggaaagagatcatttgttt 22340611  T
Q  215 tttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| ||||||||||    
T  22340610 tttcaatgtgattattatggtcgattatggctcttggtttcgaattggtttggttttgttacggtgtt 22340543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 34 - 279
Target Start/End: Original strand, 18116392 - 18116637
Alignment:
Q  34 agagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatctt 133  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18116392 agagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagatttgctacaaaggacaatctt 18116491  T
Q  134 cgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatg 233  Q
    |||||||| ||| ||||| |||||||  ||| ||||||||  ||||| |||||||||| |||||||||||| ||||||||||| ||||||||||||||||    
T  18116492 cgcaagaggaatgtccttgaggctaccaatgtttcttgtggagccttatgtggtaaggaggaggaaagggatcatttgtttttccaatgtgattattatg 18116591  T
Q  234 gtcgattatggctcttgatatcgaattggcttggttttattacggt 279  Q
    |||| |||||||| ||| ||||| |||||||||||||| |||||||    
T  18116592 gtcggttatggcttttgctatcggattggcttggttttgttacggt 18116637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 17826772 - 17826948
Alignment:
Q  15 tggacatcaatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 114  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17826772 tggacatcaatatcactgtagagtttgatcaatttttatggcttaaagtggtttccttaaaagttaacatttttgtttggcgtctctttctgaatagact 17826871  T
Q  115 tgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaagg 191  Q
    |||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17826872 tgctacaaaggagaatcttcgcaagaggaatgtccttcaggctacagatgcttcttgtgcggccttgtgtggtaagg 17826948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 98 - 280
Target Start/End: Original strand, 15705634 - 15705816
Alignment:
Q  98 ctctttctgaatagacttgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggagg 197  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  15705634 ctctctctgaatggacttgctacaaatgacaatcttcgcaagaggaatatccttcaggctacagatgcttcttgtgcggccttgtgtgataaggaggagg 15705733  T
Q  198 aaagggaccatttgttttttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggtg 280  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  15705734 aaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttgatatcgaattgacttggttttgttacggtg 15705816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 21 - 282
Target Start/End: Complemental strand, 8111143 - 8110882
Alignment:
Q  21 tcaatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 120  Q
    |||| ||||||  ||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| ||    
T  8111143 tcaacatcactgcagagtttaatcaatttttatggcttaaagcggttccattaaaggttaatatttttgtatggcgtctctttctgaatagacttgcaac 8111044  T
Q  121 aaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaa 220  Q
    ||||||||| || |||||||| ||  || || ||| | |  |||  ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||    
T  8111043 aaaggacaacctgcgcaagaggaacgtctttgaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttcttttttcaa 8110944  T
Q  221 tgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| ||||||    
T  8110943 tgtgatcattatggtcgattatggctcttgatatcgaattggtttggtattgttaaggtgtt 8110882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 38 - 279
Target Start/End: Original strand, 23158164 - 23158405
Alignment:
Q  38 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgca 137  Q
    |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  23158164 tttgatcaatttttatggcttaaagcagtccccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaaggataatcttcgca 23158263  T
Q  138 agagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcg 237  Q
    |||| ||| | ||| |||||||  ||| ||||||||  || || |||||||||| |||||||||||| ||||||||||| |||| |||||||||||||||    
T  23158264 agaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatatgattattatggtcg 23158363  T
Q  238 attatggctcttgatatcgaattggcttggttttattacggt 279  Q
    |||||||||  || ||||| ||||| | |||||| |||||||    
T  23158364 attatggcttatgctatcggattggttaggttttgttacggt 23158405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 38 - 279
Target Start/End: Original strand, 36279217 - 36279458
Alignment:
Q  38 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgca 137  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||| |||||||| |    
T  36279217 tttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggcggttctttctgaatagacttgctacaaaggataatcttcgta 36279316  T
Q  138 agagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcg 237  Q
    |||| ||| | ||| |||||||  ||| ||||||||  || || |||||||||| |||| ||||||| ||||||||||| ||||||| ||||||||||||    
T  36279317 agaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggagaaaagggatcatttgtttttccaatgtgcttattatggtcg 36279416  T
Q  238 attatggctcttgatatcgaattggcttggttttattacggt 279  Q
    |||||||||  || ||||| ||||| | |||||| |||||||    
T  36279417 attatggcttatgctatcggattggttaggttttgttacggt 36279458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 38 - 246
Target Start/End: Complemental strand, 51872893 - 51872685
Alignment:
Q  38 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgca 137  Q
    |||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  51872893 tttgttcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaaggataatcttcgca 51872794  T
Q  138 agagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcg 237  Q
    |||| ||| | ||| |||||||  ||| ||| | ||  || || | |||||||| |||||||||||| ||||||||||| ||||| ||||||||||||||    
T  51872793 agaggaatgttcttgaggctaccaatgtttcctatggtgctttatttggtaaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcg 51872694  T
Q  238 attatggct 246  Q
    |||||||||    
T  51872693 attatggct 51872685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 12916024 - 12915758
Alignment:
Q  13 gatggacatcaatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaataga 112  Q
    |||||||| ||| ||||||  ||| ||| | ||||| || |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  12916024 gatggacaccaagatcactgaagattttaaccaattcttgtggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctctttctgaataga 12915925  T
Q  113 cttgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgt 212  Q
     ||||||||||| ||||  | ||||| || ||| |||||  |||||   ||| |||||||||||||||||||||||||| ||||||||| ||| |||| |    
T  12915924 attgctacaaagaacaacttgcgcaaaaggaatgtccttgcggctaacaatgtttcttgtgcggccttgtgtggtaaggaggaggaaagagacaatttat 12915825  T
Q  213 tttttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggt 279  Q
    |||||||||||||  ||||||| || |||||||||||| ||||| | ||||||||| || |||||||    
T  12915824 tttttcaatgtgaccattatgggcggttatggctcttggtatcgcagtggcttggtattgttacggt 12915758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 3621733 - 3621466
Alignment:
Q  15 tggacatcaatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 114  Q
    ||||| |||||||||||  ||||||| |||||||||||||||||||| |||| || ||||| ||||| |||||||| |||||||| ||||||||||||||    
T  3621733 tggacttcaatatcactgcagagtttaatcaatttttatggcttaaaccggtcccattaaaggttaatatttttgtatggcgtctttttctgaatagact 3621634  T
Q  115 tgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttt 214  Q
    ||| ||||||||||| || || ||||| ||  | ||| ||| | |  |||  ||||| ||| ||||||||||||||| ||||||||| |||||||| |||    
T  3621633 tgcaacaaaggacaacctgcgtaagaggaacgttcttgaggtttccaatgtgtcttgcgcgaccttgtgtggtaaggaggaggaaagagaccattttttt 3621534  T
Q  215 tttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    || ||||||||| |||||||||| |||||||||||| || |||||||| ||||| || |||| |||||    
T  3621533 ttccaatgtgatcattatggtcggttatggctcttgttaacgaattggtttggtattgttactgtgtt 3621466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 34 - 246
Target Start/End: Original strand, 15649077 - 15649289
Alignment:
Q  34 agagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatctt 133  Q
    |||||||||||| || |||||||||||||| || || ||||| ||||| |||||||||||| | |||||||||||| | |||||||||||||| ||||||    
T  15649077 agagtttgatcatttattatggcttaaagcagtccctttaaaggttaatatttttgtttggaggctctttctgaatcgccttgctacaaaggataatctt 15649176  T
Q  134 cgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatg 233  Q
    |||||| | ||| ||||  |||||||  | | || |||||   | || |||||||||| ||||||||| |||||||| ||||||||||||||||||||||    
T  15649177 cgcaagcggaatgtcctcgaggctaccaacgttttttgtggtactttatgtggtaaggaggaggaaagagaccatttattttttcaatgtgattattatg 15649276  T
Q  234 gtcgattatggct 246  Q
    |||| ||||||||    
T  15649277 gtcggttatggct 15649289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 188 - 282
Target Start/End: Original strand, 17838698 - 17838792
Alignment:
Q  188 aaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    |||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  17838698 aaggaggagaaaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttgatatcgaattgacttggttttgttacggtgtt 17838792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 50693772 - 50693853
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 123  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  50693772 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 50693853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 36951405 - 36951324
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 123  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||    
T  36951405 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtatggcgtctctttctgaatagacttgctacaaa 36951324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 17469142 - 17469223
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 123  Q
    |||| ||||||||| | ||||||||||| || || ||||||||||||||||||| |||||||||||||||||||||||||||    
T  17469142 atcattttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcatctctttctgaatagacttgctacaaa 17469223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 187 - 279
Target Start/End: Original strand, 6614197 - 6614289
Alignment:
Q  187 taaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggt 279  Q
    ||||| |||||||||||| ||||||||||| |||||||||||||||||||| ||||||||  || ||||| ||||| | |||||| |||||||    
T  6614197 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggt 6614289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 24059831 - 24059759
Alignment:
Q  58 taaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaat 130  Q
    |||| ||||| | ||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  24059831 taaaacggtttcgttaaaagttaatatttttgtttgacgtctctttatgagtagacttgctacaaaggacaat 24059759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 29192472 - 29192543
Alignment:
Q  181 gtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcgattatggctcttgat 252  Q
    |||||||||||  ||||||||||||||| |||||||||| |||||| ||||||||||| | |||||||||||    
T  29192472 gtgtggtaaggaagaggaaagggaccatctgttttttcattgtgatcattatggtcgactttggctcttgat 29192543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 36951268 - 36951171
Alignment:
Q  179 ttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattac 276  Q
    |||||||||||||  ||||||||||| |||||||||||| | |||||| ||||||| ||| | ||||| || || ||  | |||||||||||| ||||    
T  36951268 ttgtgtggtaaggaagaggaaagggatcatttgttttttaattgtgatcattatgggcgactttggcttttaatttctcagtggcttggttttgttac 36951171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 50693909 - 50693964
Alignment:
Q  179 ttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatgg 234  Q
    |||||||||||||  ||||||||||| |||||||||||| | |||||| |||||||    
T  50693909 ttgtgtggtaaggaagaggaaagggatcatttgttttttaattgtgatcattatgg 50693964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 49369998 - 49369731
Alignment:
Q  15 tggacatcaatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 114  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49369998 tggacaccaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttttttggcgtctctttctgaatagact 49369899  T
Q  115 tgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttt 214  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  49369898 tgctacaaaggacaatcttcgcaagaggaatgtcctttaggctgcagatgcttcttgtgcggccttgtgtggtaaggaggaggaaagggatcatttgttt 49369799  T
Q  215 tttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49369798 tttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttgttacggtgtt 49369731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 34 - 279
Target Start/End: Original strand, 41342818 - 41343063
Alignment:
Q  34 agagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatctt 133  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41342818 agagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagatttgctacaaaggacaatctt 41342917  T
Q  134 cgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatg 233  Q
    |||||||| ||| ||||| |||||||  ||| ||||||||  ||||| |||||||||| |||||||||||| ||||||||||| ||||||||||||||||    
T  41342918 cgcaagaggaatgtccttgaggctaccaatgtttcttgtggagccttatgtggtaaggaggaggaaagggatcatttgtttttccaatgtgattattatg 41343017  T
Q  234 gtcgattatggctcttgatatcgaattggcttggttttattacggt 279  Q
    |||| |||||||| ||| ||||| |||||||||||||| |||||||    
T  41343018 gtcggttatggcttttgctatcggattggcttggttttgttacggt 41343063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 38 - 279
Target Start/End: Complemental strand, 10004139 - 10003898
Alignment:
Q  38 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgca 137  Q
    |||||||||||||||||||||||||||||||| |||||||| || ||||||| |||||| ||||||||||||||||||||||||||||| |||||||| |    
T  10004139 tttgatcaatttttatggcttaaagcggttcctttaaaagtcaatatttttgcttggcggctctttctgaatagacttgctacaaaggataatcttcgta 10004040  T
Q  138 agagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcg 237  Q
    |||  ||| || || |||||||  ||| ||||||||  ||  | |||||||||| |||||||||||| |||||||||||  |||| || | |||||||||    
T  10004039 agaagaatgtctttgaggctaccaatgtttcttgtggtgctctttgtggtaaggaggaggaaagggatcatttgtttttcgaatgcgacttttatggtcg 10003940  T
Q  238 attatggctcttgatatcgaattggcttggttttattacggt 279  Q
     |||||||| ||| ||||| ||||| | |||||| |||||||    
T  10003939 gttatggcttttgctatcggattggttaggttttgttacggt 10003898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 27030160 - 27029976
Alignment:
Q  38 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgca 137  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || ||| ||||||||||||||| |||||| |||||||| |    
T  27030160 tttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttttgaatagacttgctataaaggataatcttcgta 27030061  T
Q  138 agagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatg 222  Q
    |||| ||| ||||| |||||||  ||| ||||||||  ||  | |||||||||| ||||||||| || ||||||||||| |||||    
T  27030060 agaggaatgtccttgaggctaccaatgtttcttgtggtgctctatgtggtaaggaggaggaaagagatcatttgtttttccaatg 27029976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 183 - 282
Target Start/End: Complemental strand, 5557330 - 5557231
Alignment:
Q  183 gtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    ||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| ||||| || ||||||||||    
T  5557330 gtggtaaggaggaggaaagggaccatttgtttttttaatgtgatcattatggtcgattatgactcttgatatcgaattggtttggtattgttacggtgtt 5557231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 24545091 - 24545178
Alignment:
Q  58 taaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagagaaat 145  Q
    ||||| |||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||    
T  24545091 taaagtggttccgttaaaagttaatatttttgtctggcgtctctttctgaacagacttgctacaaaggataatcttcgaaagagaaat 24545178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 34 - 277
Target Start/End: Original strand, 28520847 - 28521090
Alignment:
Q  34 agagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatctt 133  Q
    ||||||| |||||||||| ||||||||||||||| | ||||| || || || ||||| ||||||||||| |||||||||||||||||| |||| ||| |     
T  28520847 agagtttcatcaatttttgtggcttaaagcggtttcgttaaaggtgaatatatttgtatggcgtctcttcctgaatagacttgctacagaggataatttg 28520946  T
Q  134 cgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatg 233  Q
     | | ||| ||| | ||| | |   |   ||  ||||||||| |||| |||||| || | ||||| |||||||||||||||||| | |||||  | || |    
T  28520947 tgtatgaggaatgttcttgatgtctcccttgtgtcttgtgcgaccttatgtggtgagttagaggacagggaccatttgttttttaagtgtgaccactacg 28521046  T
Q  234 gtcgattatggctcttgatatcgaattggcttggttttattacg 277  Q
    ||||||| ||||||||||| ||  ||||||||||| || |||||    
T  28521047 gtcgattgtggctcttgatctcacattggcttggtattgttacg 28521090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 37669035 - 37668976
Alignment:
Q  64 ggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 123  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||| ||||||    
T  37669035 ggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgatacaaa 37668976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 26996150 - 26996083
Alignment:
Q  59 aaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 126  Q
    |||||| |||| ||||| ||||| |||||||| ||||||||||||||||||||||||| | |||||||    
T  26996150 aaagcgattccgttaaaggttaatatttttgtctggcgtctctttctgaatagacttggtgcaaagga 26996083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 276
Target Start/End: Complemental strand, 37668918 - 37668823
Alignment:
Q  181 gtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattac 276  Q
    |||||||||||   ||||||||||| || |||||||||  |||||| ||||||||||| | || |||||||| ||  | |||||||||||| ||||    
T  37668918 gtgtggtaaggaataggaaagggacaatctgttttttcgttgtgatcattatggtcgactttgactcttgatttctcagtggcttggttttgttac 37668823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 49869309 - 49869358
Alignment:
Q  83 atttttgtttggcgtctctttctgaatagacttgctacaaaggacaatct 132  Q
    ||||||||||||||||| ||||| |||||| ||||||  |||||||||||    
T  49869309 atttttgtttggcgtctgtttctaaatagatttgctatgaaggacaatct 49869358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 48710189 - 48710109
Alignment:
Q  53 tggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatctt 133  Q
    ||||||||||| ||||| || || || ||  ||||||||||||| |||||  ||||||||||| |||| ||||| ||||||    
T  48710189 tggcttaaagcagttcctttgaaggtgaatctttttgtttggcgactcttcttgaatagacttcctaccaaggataatctt 48710109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 8595488 - 8595221
Alignment:
Q  15 tggacatcaatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 114  Q
    ||||||||||||||| |  |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8595488 tggacatcaatatcattgcagagtttgatcaatttctatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagact 8595389  T
Q  115 tgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttt 214  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  8595388 tgctacaaaggacaatcttcgtaagaggaatatccttcaggctacagatgcttcttgtgcggccttgtgtgctaaggaggaggaaagggaccatttgttt 8595289  T
Q  215 tttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| ||||||||||    
T  8595288 tttcaatgtgattattatggtcgtttatggctcttgatatcaaattcgcttggttttgttacggtgtt 8595221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 42462951 - 42462684
Alignment:
Q  15 tggacatcaatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 114  Q
    |||||||||| || |||  |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42462951 tggacatcaacattactgcagagtttgatcaatttttatggcttaaaacggctcccttaaaagttaacatttttgtttggcgtttctttctgaatagact 42462852  T
Q  115 tgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttt 214  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||| |||||| || ||||| ||||||||| || |||||||||    
T  42462851 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcatcttgtgcgaccttgtatgataaggaggaggaaagagatcatttgttt 42462752  T
Q  215 tttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    ||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||| ||||| ||||    
T  42462751 tttcaatgtgattattatggtcggttatggcttttgatatcaaattgacttggttttgttacgatgtt 42462684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 35 - 282
Target Start/End: Complemental strand, 23603473 - 23603227
Alignment:
Q  35 gagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttc 134  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  23603473 gagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgactctttctgaatagacttgctactaaggacaaccttc 23603374  T
Q  135 gcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatgg 234  Q
    ||||||| ||| ||||||| |||||| || ||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||||||||| ||||||    
T  23603373 gcaagaggaatgtccttca-gctacaaatacttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatctgttttttcaatgtgatttttatgg 23603275  T
Q  235 tcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    |||| ||||||||||| | |||||||||||||||||| ||||||||||    
T  23603274 tcgactatggctcttggtttcgaattggcttggttttgttacggtgtt 23603227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 48547785 - 48547519
Alignment:
Q  15 tggacatcaatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 114  Q
    ||||| |||| ||||||  ||||||| |||||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||||||||||||    
T  48547785 tggacttcaacatcactgcagagtttaatcaatttttatggcttaaagcagttccattaaaggttaatatttttgtctggcgtctctttctgaatagact 48547686  T
Q  115 tgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttt 214  Q
    ||| ||||||||||| || |||||||| ||  ||||| ||| | |  ||| |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  48547685 tgcaacaaaggacaacctgcgcaagaggaacgtccttgaggtttccaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 48547586  T
Q  215 tttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggtgt 281  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||    
T  48547585 tttcaatgtgatcattatggtcgattatggctcttgatatcgaattggtttggtattgttacggtgt 48547519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 26 - 271
Target Start/End: Original strand, 23571623 - 23571868
Alignment:
Q  26 atcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 125  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  23571623 atcactgtagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtatgacgtctctttctgaatagacttgctacaaagg 23571722  T
Q  126 acaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtga 225  Q
    |||||||||||||||  ||| ||||| |||||||  ||| ||||||||  || || |||||||||| |||||||||||| ||||||||||| ||||| ||    
T  23571723 acaatcttcgcaagacgaatgtccttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcga 23571822  T
Q  226 ttattatggtcgattatggctcttgatatcgaattggcttggtttt 271  Q
    |||||||||||| |||||||| ||| ||||| ||||| | ||||||    
T  23571823 ttattatggtcggttatggcttttgctatcggattggttaggtttt 23571868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 38 - 279
Target Start/End: Complemental strand, 3514892 - 3514651
Alignment:
Q  38 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgca 137  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||| ||||||||||    
T  3514892 tttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggttctttctgaatagacttgctacaaaggataatcttcgca 3514793  T
Q  138 agagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcg 237  Q
    |||| ||| | ||| ||||||   ||| ||||||||  || || |||||||||| |||||||||||| ||||||||||| ||||| ||||||||||||||    
T  3514792 agaggaatgttcttgaggctatcaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcg 3514693  T
Q  238 attatggctcttgatatcgaattggcttggttttattacggt 279  Q
     ||||||||  || ||||  ||||| | |||||| |||||||    
T  3514692 cttatggcttatgctatccgattggttaggttttgttacggt 3514651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 279
Target Start/End: Original strand, 17153817 - 17154062
Alignment:
Q  34 agagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatctt 133  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||| |||||||||||||||||||||| ||||||    
T  17153817 agagtttgatcaatttttatggcttaaagcggttccattaaaagttaatatttttatttggcggctctttatgaatagacttgctacaaaggataatctt 17153916  T
Q  134 cgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatg 233  Q
    |||||||| ||| ||||  |||||||  ||| || |||||  || || |||||||| | |||||||||||| ||||||||||| ||||||||||||||||    
T  17153917 cgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaagaggaggaaagggatcatttgtttttccaatgtgattattatg 17154016  T
Q  234 gtcgattatggctcttgatatcgaattggcttggttttattacggt 279  Q
    |||| ||||||||  || ||| | ||||| | |||||| |||||||    
T  17154017 gtcggttatggcttatgctattggattggttaggttttgttacggt 17154062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 38 - 271
Target Start/End: Complemental strand, 9819268 - 9819035
Alignment:
Q  38 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgca 137  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| || |||||||||||||||||||||||||| |||||||| |    
T  9819268 tttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttatgtttggcggctttttctgaatagacttgctacaaaggataatcttcgta 9819169  T
Q  138 agagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcg 237  Q
    |||| ||| ||||| |||||||  ||| ||||||||  || || |||||||||| |||||| | ||| ||||||||||| ||||| || | |||||||||    
T  9819168 agaggaatgtccttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggacaaggatcatttgtttttccaatgcgacttttatggtcg 9819069  T
Q  238 attatggctcttgatatcgaattggcttggtttt 271  Q
     ||||||||  || ||||| ||||| | ||||||    
T  9819068 tttatggcttatgctatcggattggttaggtttt 9819035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 71 - 279
Target Start/End: Original strand, 53152132 - 53152340
Alignment:
Q  71 ttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttctt 170  Q
    ||||||||||| |||||||||||| | ||||||| |||| |||||||||||||||| |||||||||||||| ||| ||||  |||||||  ||| || ||    
T  53152132 ttaaaagttaatatttttgtttggaggctctttcagaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgtttttt 53152231  T
Q  171 gtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttt 270  Q
    |||  || || ||||| |||| ||||||||| || |||||||||||||||||||||||||||||||| ||||||||  || ||||| ||||| | ||| |    
T  53152232 gtggtgctttatgtggcaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcggttatggcttatgctatcggattggttaggtat 53152331  T
Q  271 tattacggt 279  Q
    | |||||||    
T  53152332 tgttacggt 53152340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 16664180 - 16664077
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagag 141  Q
    |||||||||||||| | ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| || ||| | ||||| ||    
T  16664180 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaaagataatttgcgcaaaag 16664081  T
Q  142 aaat 145  Q
    ||||    
T  16664080 aaat 16664077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 42459294 - 42459547
Alignment:
Q  15 tggacatcaatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 114  Q
    |||||| ||| ||||||  ||| ||| | ||||| ||||||||||| | |||||| ||||| ||||||||||||||||| ||||| |||||||||||| |    
T  42459294 tggacaacaacatcactgaagattttaaccaattcttatggcttaaggaggttccgttaaaggttaacatttttgtttgacgtctttttctgaatagaat 42459393  T
Q  115 tgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttt 214  Q
    |||||||||||||||  | | ||| || ||| ||||| ||||||   | |  ||||||||| |||||||||||           ||| |||||||| |||    
T  42459394 tgctacaaaggacaacttgcacaaaaggaatgtccttgaggctaacaaagtatcttgtgcgaccttgtgtggt-----------aagagaccatttattt 42459482  T
Q  215 tttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggt 279  Q
    |||||||||||  ||||||| || |||||||||||| ||||| | ||||||||| || |||||||    
T  42459483 tttcaatgtgaccattatggacggttatggctcttggtatcgcagtggcttggtattgttacggt 42459547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 52196490 - 52196409
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 123  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||||    
T  52196490 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgcctctttctgaatagacttgctacaaa 52196409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 268
Target Start/End: Original strand, 39632858 - 39633076
Alignment:
Q  50 ttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagagaaatatcc 149  Q
    |||||| | ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| || ||| | |  || |||||| ||     
T  39632858 ttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaaagataatttgcataaaagaaatgtca 39632957  T
Q  150 ttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcgattatggctctt 249  Q
    || |  | ||   |    |||| ||| | | |||||||||||  ||||||||||| ||| |||||||||| |||||  ||||||||||| | ||||||||    
T  39632958 ttgactccactcttatggcttgcgcgacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgaccattatggtcgactttggctctt 39633057  T
Q  250 gatatcgaattggcttggt 268  Q
    ||| ||  |||||||||||    
T  39633058 gatttctcattggcttggt 39633076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 10754250 - 10754186
Alignment:
Q  59 aaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 123  Q
    ||||||||||| || || |||||||| |||||||||||||||||| |||||||||||||||||||    
T  10754250 aaagcggttccgttgaaggttaacatctttgtttggcgtctctttatgaatagacttgctacaaa 10754186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 16664043 - 16663988
Alignment:
Q  179 ttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatgg 234  Q
    |||||||||||||  ||||||||||| |||||||||||| | |||||| |||||||    
T  16664043 ttgtgtggtaaggaagaggaaagggatcatttgttttttaattgtgatcattatgg 16663988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 10754128 - 10754072
Alignment:
Q  181 gtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcg 237  Q
    |||||||||||  ||||||||||| ||| |||||||||  |||||| ||||||||||    
T  10754128 gtgtggtaaggaagaggaaagggatcatctgttttttctttgtgatcattatggtcg 10754072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 33 - 282
Target Start/End: Complemental strand, 38938685 - 38938436
Alignment:
Q  33 tagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatct 132  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38938685 tagagtttgatcagtttttatggcttaaagcggttcccttaaaaattaacatttttgtttggcgtctctttctgaatagacttactacaaaggacaatct 38938586  T
Q  133 tcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattat 232  Q
    ||||||||| ||| || ||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  38938585 tcgcaagaggaatgtctttcaggctacatatgcttcttgtgcggccttatgtggtaaggaggaggaaagggaccatttattttttcaatgtgattattat 38938486  T
Q  233 ggtcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| ||||||    
T  38938485 ggtcgattatgactcttgatatcgaattggcttggttttgttatggtgtt 38938436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 38 - 279
Target Start/End: Complemental strand, 30276097 - 30275856
Alignment:
Q  38 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgca 137  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  30276097 tttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggaggctctttctgaatagactcgctacaaaggataatcttcgca 30275998  T
Q  138 agagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcg 237  Q
    |||| ||| | ||| |||||||  ||| ||||||||  || || |||||||||| ||||||||| || ||||||||||| ||||||||||||||||||||    
T  30275997 agaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagagatcatttgtttttccaatgtgattattatggtcg 30275898  T
Q  238 attatggctcttgatatcgaattggcttggttttattacggt 279  Q
    |||||| ||  || ||||| ||||| | |||||| |||||||    
T  30275897 attatgacttatgttatcggattggttaggttttgttacggt 30275856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 23 - 279
Target Start/End: Complemental strand, 23385066 - 23384810
Alignment:
Q  23 aatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 122  Q
    |||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||    
T  23385066 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggcggctctttctgaatagacatgctacaa 23384967  T
Q  123 aggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatg 222  Q
    |||| |||||||||||||| ||| ||||  |||||||  ||| || |||||  || || |||||||| | ||||||||| || |||||||| || |||||    
T  23384966 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaagaggaggaaagtgatcatttgttcttccaatg 23384867  T
Q  223 tgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggt 279  Q
    ||||||||||||| | ||||||||  || ||||||||||| | |||||| |||||||    
T  23384866 tgattattatggttggttatggcttatgctatcgaattggttaggttttgttacggt 23384810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 23 - 279
Target Start/End: Complemental strand, 32350097 - 32349841
Alignment:
Q  23 aatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 122  Q
    |||||||||  ||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | | |||||||||||||||||||||||||    
T  32350097 aatatcactgcagattttgatcaatttttatggcttaaagcgattcccttaaaagttaatatttttgtttcgtggctctttctgaatagacttgctacaa 32349998  T
Q  123 aggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatg 222  Q
    |||| | |||||||||||| ||| | ||| |||||||  ||| ||||||||  || || |||||||||| |||||||||||| ||||||||||| |||||    
T  32349997 aggatattcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatg 32349898  T
Q  223 tgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggt 279  Q
     |||||||||||||||||||||||  || ||||| ||||| | || ||| |||||||    
T  32349897 cgattattatggtcgattatggcttatgctatcggattggttaggatttgttacggt 32349841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 34 - 246
Target Start/End: Complemental strand, 21963620 - 21963408
Alignment:
Q  34 agagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatctt 133  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||||||| |||||||||||||||| ||||||    
T  21963620 agagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaaggataatctt 21963521  T
Q  134 cgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatg 233  Q
    |||||||| ||| ||||  |||||||  ||| || |||||  || || |||||||||| |||||||| ||| ||||||||||||| ||||||||||||||    
T  21963520 cgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaaaggatcatttgttttttcgatgtgattattatg 21963421  T
Q  234 gtcgattatggct 246  Q
    || | ||||||||    
T  21963420 gtaggttatggct 21963408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 34 - 200
Target Start/End: Complemental strand, 21964805 - 21964639
Alignment:
Q  34 agagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatctt 133  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||||||| |||||||||||||||| ||||||    
T  21964805 agagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaaggataatctt 21964706  T
Q  134 cgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaa 200  Q
    |||||||| ||| ||||  |||||||  ||| || |||||  || || |||||||||| ||||||||    
T  21964705 cgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaa 21964639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 76 - 279
Target Start/End: Original strand, 27914653 - 27914856
Alignment:
Q  76 agttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcg 175  Q
    |||||| ||||||||||| ||  |||||||||||||||||||||||||||| |||||||||||||| ||| ||||  |||||||  ||| || || ||      
T  27914653 agttaatatttttgtttgacggttctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttatggt 27914752  T
Q  176 gccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttatta 275  Q
    ||  | |||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| ||||||||  |||||||  ||||| | |||||| |||    
T  27914753 gctatatgtggtaaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgatatcagattggttaggttttgtta 27914852  T
Q  276 cggt 279  Q
    ||||    
T  27914853 cggt 27914856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 1258665 - 1258584
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 123  Q
    |||||||||||||| | ||||||||||| || || |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  1258665 atcaatttttatggttaaaagcggttccgttgaaggttaacatatttgttttgcgtctctttctgaatagacttgctacaaa 1258584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 43 - 221
Target Start/End: Complemental strand, 22300966 - 22300788
Alignment:
Q  43 tcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagaga 142  Q
    ||||||||||||| | |||| |||||| || || |||||||| |||||  | ||||||||||||||||||| |||||||||||| ||| | ||||| |||    
T  22300966 tcaatttttatggttaaaagtggttccgttgaaggttaacatatttgtaagacgtctctttctgaatagacctgctacaaaggataatttgcgcaaaaga 22300867  T
Q  143 aatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaat 221  Q
    ||| ||||| |  ||||   ||   | || ||| ||||||||||||||   |||||||| |||||| ||||||||||||    
T  22300866 aatgtccttgaccctacccttgtggcgtgcgcgaccttgtgtggtaagaaagaggaaagagaccatctgttttttcaat 22300788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 1258528 - 1258455
Alignment:
Q  179 ttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcgattatggctcttgat 252  Q
    ||||||||||| |  ||||||||||||||| |||||||||| |||| | ||||||| ||  | |||||||||||    
T  1258528 ttgtgtggtaaagaagaggaaagggaccatctgttttttcactgtgctcattatggccgcctttggctcttgat 1258455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 282
Target Start/End: Original strand, 58387 - 58654
Alignment:
Q  15 tggacatcaatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 114  Q
    |||||||||| ||||||  ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  58387 tggacatcaacatcactgcagagtttaatcaatttttatggcttaaagcggttcccttaaaggttaacatttttgtttggcgtctctttctgaatagact 58486  T
Q  115 tgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttt 214  Q
    ||||||||||||||| ||||||||||| ||| ||||| |||||||  ||  |||||||||||||||||||||||||| |||||||||||||| |||||||    
T  58487 tgctacaaaggacaaccttcgcaagaggaatgtccttgaggctaccaatatttcttgtgcggccttgtgtggtaaggaggaggaaagggaccgtttgttt 58586  T
Q  215 tttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    |||||||||||  |||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||    
T  58587 tttcaatgtgacaattatggtcggttatggctcttgatatcaaattggcttggttttgttacggtgtt 58654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 280
Target Start/End: Complemental strand, 11266256 - 11265991
Alignment:
Q  15 tggacatcaatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 114  Q
    |||||| ||| ||||||  |||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  11266256 tggacaacaacatcactgcagagtttggtcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggcgtctctttctgaatagact 11266157  T
Q  115 tgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttt 214  Q
    ||||||||||||||| ||||||||||| ||| ||||| |||||||  ||| |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  11266156 tgctacaaaggacaaccttcgcaagaggaatgtccttgaggctactaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 11266057  T
Q  215 tttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggtg 280  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||| ||||||||    
T  11266056 tttcaatgtgactattatggtcggttatggctcttgatttcgaattggcttggttttgttacggtg 11265991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 21 - 282
Target Start/End: Complemental strand, 27891923 - 27891662
Alignment:
Q  21 tcaatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 120  Q
    |||| ||||||  ||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||| |||| ||||||||||||||||||||| ||    
T  27891923 tcaacatcactgcagagtttaatcaatttttatggcttaaagcggttccattaaaggttaatatttttgtctggcatctctttctgaatagacttgcaac 27891824  T
Q  121 aaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaa 220  Q
    ||||||||| || |||||||| ||  ||||||||| | |  |||  ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27891823 aaaggacaacctgcgcaagaggaacgtccttcaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttttttcaa 27891724  T
Q  221 tgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||    
T  27891723 tgtgatcattatggtcgattatggctcttgatatcgaattggtttggtattgttacggtgtt 27891662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 279
Target Start/End: Original strand, 5824979 - 5825224
Alignment:
Q  34 agagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatctt 133  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||||||| |||||||||||||||| ||||||    
T  5824979 agagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaaggataatctt 5825078  T
Q  134 cgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatg 233  Q
    |||||||| ||| ||||  |||||||  ||| || |||||  || || |||||||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  5825079 cgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaagggatcatttgttttttcgatgtgattattatg 5825178  T
Q  234 gtcgattatggctcttgatatcgaattggcttggttttattacggt 279  Q
    || | ||||||||  || ||||| ||||| | |||||| |||||||    
T  5825179 gtaggttatggcttatgctatcggattggttaggttttgttacggt 5825224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 23 - 279
Target Start/End: Original strand, 6678577 - 6678831
Alignment:
Q  23 aatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 122  Q
    |||||||||  |||||||||||||||||||||||||||||||||||| ||| |||  || |||||||||||| | |||||||||||| ||||||||||||    
T  6678577 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttagaag--aatatttttgtttggaggctctttctgaatcgacttgctacaa 6678674  T
Q  123 aggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatg 222  Q
    |||| |||||||||||||| ||| ||||  |||||||  ||| || |||||  || || | |||||||| ||||||||| || |||||||||||||||||    
T  6678675 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatatggtaaggaggaggaaagtgatcatttgttttttcaatg 6678774  T
Q  223 tgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggt 279  Q
    ||||||||||||||| ||||||||  || ||||| ||||| | ||| || |||||||    
T  6678775 tgattattatggtcggttatggcttatgctatcggattggttaggtattgttacggt 6678831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 46 - 255
Target Start/End: Complemental strand, 29150504 - 29150296
Alignment:
Q  46 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagagaaat 145  Q
    ||||||||||||||| |||||||| ||||| ||||| |||||||||||| |||| || ||||||||||||||||||||||||||  | ||||| || |||    
T  29150504 atttttatggcttaaggcggttccgttaaaggttaatatttttgtttggtgtcttttcctgaatagacttgctacaaaggacaacttgcgcaaaaggaat 29150405  T
Q  146 atccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcgattatggc 245  Q
     ||| | ||||||   |||  |||||||||||||| ||||||||||  |||||||| |||||||| ||||||||||||||  ||||||| || |||||||    
T  29150404 gtcc-tgaggctaacaatgtatcttgtgcggccttctgtggtaaggacgaggaaagagaccatttattttttcaatgtgaccattatggccggttatggc 29150306  T
Q  246 tcttgatatc 255  Q
    ||||||||||    
T  29150305 tcttgatatc 29150296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 38 - 234
Target Start/End: Original strand, 31962686 - 31962882
Alignment:
Q  38 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgca 137  Q
    |||| ||||||||||||||| |||| |||||| ||||| |||||||| |||||||||| ||||| |||||||||||||||||||||||| ||| | ||||    
T  31962686 tttgctcaatttttatggctaaaagtggttccgttaaaggttaacatatttgtttggcatctctatctgaatagacttgctacaaaggataatttgcgca 31962785  T
Q  138 agagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatgg 234  Q
      || ||| | ||| |  | ||   ||   | |||||  |||||||||||||||  ||||| |||||||||||||||||||| |||||| |||||||    
T  31962786 gaaggaatgttcttgatccgacccttgtggcatgtgcaaccttgtgtggtaaggaagaggatagggaccatttgttttttcattgtgatcattatgg 31962882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 279
Target Start/End: Original strand, 10462243 - 10462392
Alignment:
Q  130 tcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattat 229  Q
    |||||||||||| ||| ||||  |||||||  ||| || |||||  || || ||| |||||| |||||||||||| ||||||||||| ||||||||||||    
T  10462243 tcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtagtaaggaggaggaaagggatcatttgtttttccaatgtgattat 10462342  T
Q  230 tatggtcgattatggctcttgatatcgaattggcttggttttattacggt 279  Q
    |||||||| ||||||||  |||||||| ||||| | |||||| |||||||    
T  10462343 tatggtcggttatggcttatgatatcggattggttaggttttgttacggt 10462392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 29322997 - 29322916
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 123  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  29322997 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 29322916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 38931973 - 38931892
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 123  Q
    |||||||||||||| | |||||||||||  | || |||||||| |||||||||| |||||||||||||||||||||||||||    
T  38931973 atcaatttttatggttgaaagcggttccgctgaaggttaacatatttgtttggcatctctttctgaatagacttgctacaaa 38931892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 8896447 - 8896369
Alignment:
Q  45 aatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 123  Q
    ||||||||||| | ||||||||||  || || ||||||||  |||||||||||||||||||||||||||||||||||||    
T  8896447 aatttttatggttgaaagcggttctgttgaaggttaacatagttgtttggcgtctctttctgaatagacttgctacaaa 8896369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 8895451 - 8895378
Alignment:
Q  179 ttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcgattatggctcttgat 252  Q
    |||||||||||||  ||||||||||| ||| |||||||| | |||||| ||||||| ||| | ||||| |||||    
T  8895451 ttgtgtggtaaggaagaggaaagggatcatatgttttttaattgtgatcattatgggcgactttggcttttgat 8895378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 34 - 282
Target Start/End: Complemental strand, 74510 - 74262
Alignment:
Q  34 agagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatctt 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  74510 agagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaacctt 74411  T
Q  134 cgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatg 233  Q
    |||||||| ||| ||||| |||||||  ||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||    
T  74410 cgcaagaggaatgtccttgaggctacctatgtttcttgtggggccttgtgtggtaaggaggaggaaatggaccatttgtttttccaatgtgattattatg 74311  T
Q  234 gtcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    |||  |||||||| |||||||| ||||||||||||||| |||| |||||    
T  74310 gtcagttatggcttttgatatcaaattggcttggttttgttacagtgtt 74262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 34 - 282
Target Start/End: Original strand, 40891774 - 40892022
Alignment:
Q  34 agagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatctt 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  40891774 agagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaacctt 40891873  T
Q  134 cgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatg 233  Q
    |||||||| ||| ||||| |||||||  ||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||    
T  40891874 cgcaagaggaatgtccttgaggctacctatgtttcttgtggggccttgtgtggtaaggaggaggaaatggaccatttgtttttccaatgtgattattatg 40891973  T
Q  234 gtcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    |||  |||||||| |||||||| ||||||||||||||| |||| |||||    
T  40891974 gtcagttatggcttttgatatcaaattggcttggttttgttacagtgtt 40892022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 34 - 282
Target Start/End: Complemental strand, 586996 - 586748
Alignment:
Q  34 agagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatctt 133  Q
    |||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  586996 agagtttgatcgttttttatggcttaaagcggttcccttaaaggttaatatttttgtttggcgtctctttttgaatagacttgctacaaaggacaatctt 586897  T
Q  134 cgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatg 233  Q
    || || || ||| ||||| |||||||  ||| |||  ||| |||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  586896 cgtaaaaggaatgtccttgaggctaccaatgtttcaagtggggccttatgtggtaaggaggaggaaagggatcatttgttttttcaatgtgattattatg 586797  T
Q  234 gtcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||||    
T  586796 gtcgattatggcttctgatatcgaattggcttggttttgttacggtgtt 586748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 23 - 279
Target Start/End: Original strand, 37075589 - 37075845
Alignment:
Q  23 aatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 122  Q
    |||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | ||||||| |||| ||||||||||||    
T  37075589 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggaggctctttcagaatcgacttgctacaa 37075688  T
Q  123 aggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatg 222  Q
    |||| |||||||||||||| ||| ||||  |||||||  ||| || |||||  || || ||||| |||| |||||||||||| |||||||||||||||||    
T  37075689 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggcaaggaggaggaaagggatcatttgttttttcaatg 37075788  T
Q  223 tgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggt 279  Q
    ||||||||||||||| ||||||||  || ||||| ||||| | ||| || |||||||    
T  37075789 tgattattatggtcggttatggcttatgctatcggattggttaggtattgttacggt 37075845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 38 - 279
Target Start/End: Complemental strand, 12121794 - 12121553
Alignment:
Q  38 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgca 137  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  12121794 tttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaaggataatcttcgca 12121695  T
Q  138 agagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcg 237  Q
    |||| ||| | ||  ||| |||  ||| ||||||||  || || |||||||||| |||||||| ||| ||||||||||| ||||| ||||||||||||||    
T  12121694 agaggaatgttctagaggataccaatgtttcttgtggtgctttatgtggtaaggaggaggaaatggatcatttgtttttccaatgcgattattatggtcg 12121595  T
Q  238 attatggctcttgatatcgaattggcttggttttattacggt 279  Q
    |||||||||  || ||||| ||||| | |||||  |||||||    
T  12121594 attatggcttatgctatcggattggttaggtttggttacggt 12121553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 38 - 279
Target Start/End: Complemental strand, 24819905 - 24819664
Alignment:
Q  38 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgca 137  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||| |||||||| |    
T  24819905 tttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttctgaatagacttgctacaaaggataatcttcgta 24819806  T
Q  138 agagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcg 237  Q
    |||| ||  ||||| |||||||  | | ||||||||  || || |||||||||| |||||||||||| ||||||||||| ||||| || |||||||||||    
T  24819805 agaggaacgtccttgaggctaccaacgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcgactattatggtcg 24819706  T
Q  238 attatggctcttgatatcgaattggcttggttttattacggt 279  Q
     ||||||||  || ||||| ||||| | |||||| |||||||    
T  24819705 tttatggcttatgctatcggattggttaggttttgttacggt 24819664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 38 - 279
Target Start/End: Original strand, 36575396 - 36575637
Alignment:
Q  38 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgca 137  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||| |||||||| |    
T  36575396 tttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttctgaatagacttgctacaaaggataatcttcgta 36575495  T
Q  138 agagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcg 237  Q
    |||| ||| ||||| |||||||  ||| ||||||||  ||  | |||||||||| |||||||||||| ||||||||||| ||||| || | |||||||||    
T  36575496 agaggaatgtccttgaggctaccaatgtttcttgtggtgctctatgtggtaaggaggaggaaagggatcatttgtttttccaatgcgacttttatggtcg 36575595  T
Q  238 attatggctcttgatatcgaattggcttggttttattacggt 279  Q
     ||||||||  || ||||| ||||| | |||||| |||||||    
T  36575596 tttatggcttatgctatcggattggttaggttttgttacggt 36575637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 282
Target Start/End: Original strand, 20705483 - 20705750
Alignment:
Q  15 tggacatcaatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 114  Q
    ||||| |||||||||||  |||||||  ||||||||||||||||||| | || || || || ||||| |||||||| |||||||| ||||||||||||||    
T  20705483 tggacttcaatatcactgcagagtttactcaatttttatggcttaaaccagtcccattgaaggttaatatttttgtatggcgtctttttctgaatagact 20705582  T
Q  115 tgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttt 214  Q
    ||| |||||||| ||||| |||||||||||  | ||| ||| | |  |||   |||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  20705583 tgcaacaaaggataatctgcgcaagagaaacgttcttgaggtttctaatgtggcttgtgcggctttgtgtggtaaggaggaggaaagagaccatttgttt 20705682  T
Q  215 tttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    || ||||||||| ||||||| || |||||||| ||||||||||||||| ||||| || |||| |||||    
T  20705683 ttccaatgtgatcattatggccggttatggcttttgatatcgaattggtttggtattgttactgtgtt 20705750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 282
Target Start/End: Original strand, 20873527 - 20873794
Alignment:
Q  15 tggacatcaatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 114  Q
    ||||| |||||||||||  |||||||  ||||||||||||||||||| | || || || || ||||| |||||||| |||||||| ||||||||||||||    
T  20873527 tggacttcaatatcactgcagagtttactcaatttttatggcttaaaccagtcccattgaaggttaatatttttgtatggcgtctttttctgaatagact 20873626  T
Q  115 tgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttt 214  Q
    ||| |||||||| ||||| |||||||||||  | ||| ||| | |  |||   |||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  20873627 tgcaacaaaggataatctgcgcaagagaaacgttcttgaggtttctaatgtggcttgtgcggctttgtgtggtaaggaggaggaaagagaccatttgttt 20873726  T
Q  215 tttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    || ||||||||| ||||||| || |||||||| ||||||||||||||| ||||| || |||| |||||    
T  20873727 ttccaatgtgatcattatggccggttatggcttttgatatcgaattggtttggtattgttactgtgtt 20873794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 23 - 279
Target Start/End: Original strand, 9403131 - 9403380
Alignment:
Q  23 aatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 122  Q
    |||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||         |||||| ||||||||||||    
T  9403131 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggac-------ctgaatcgacttgctacaa 9403223  T
Q  123 aggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatg 222  Q
    |||| |||||||||||||| ||| ||||  |||||||  ||| || |||||  || || |||||||||| |||||||||||| ||||||||||| |||||    
T  9403224 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatg 9403323  T
Q  223 tgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggt 279  Q
    ||||||||||||||| ||||||||  || ||||| ||||| | |||||| |||||||    
T  9403324 tgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggt 9403380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 34 - 246
Target Start/End: Complemental strand, 34982059 - 34981847
Alignment:
Q  34 agagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatctt 133  Q
    |||||||||||| |||||||||||||||||||| || ||||| ||||| |||||||||||| | |||||||||||| | |||||||||||||| ||||||    
T  34982059 agagtttgatcagtttttatggcttaaagcggtccctttaaaggttaatatttttgtttggaggctctttctgaatcgccttgctacaaaggataatctt 34981960  T
Q  134 cgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatg 233  Q
    |||||||| ||| ||||  |||||||  | | ||  ||||  || || |||||||||| ||||||||| |||||||| || |||||||||||||||||||    
T  34981959 cgcaagaggaatgtcctcgaggctaccaacgttttctgtggtgctttatgtggtaaggaggaggaaagagaccatttattctttcaatgtgattattatg 34981860  T
Q  234 gtcgattatggct 246  Q
    |||| ||||||||    
T  34981859 gtcggttatggct 34981847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 27987585 - 27987675
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatct 132  Q
    |||| ||||| |||| |||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  27987585 atcattttttgtggcataaagcggttccgttaaaggttaatatttttgtatggcgtctctttctgaatagacttgctacaaaggataatct 27987675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 22865766 - 22865847
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 123  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  22865766 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 22865847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 47549050 - 47548969
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 123  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  47549050 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 47548969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 47553493 - 47553412
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 123  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  47553493 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 47553412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 27869099 - 27869020
Alignment:
Q  47 tttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 126  Q
    ||||||||||| |||||||||   ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27869099 tttttatggctaaaagcggttatgttaaaggttaacatatttgtttggcgtctctttctgaatagacttgctacaaagga 27869020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 18815411 - 18815501
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatct 132  Q
    |||| ||||| |||| |||||||||||| ||||| ||||| || ||||| | ||||||||||||||||||||||||||||||||| |||||    
T  18815411 atcattttttgtggcataaagcggttccgttaaaggttaatatatttgtctagcgtctctttctgaatagacttgctacaaaggataatct 18815501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 8457213 - 8457305
Alignment:
Q  53 tggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagagaaat 145  Q
    |||| |||||||||| | ||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||||  |||| || |||||||||    
T  8457213 tggcataaagcggtttcgttaaaggttaatatttttgtctggcgtctctttctgaatagacttgatacaaaggattatctgcggaagagaaat 8457305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 279
Target Start/End: Complemental strand, 5196834 - 5196600
Alignment:
Q  45 aatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagagaaa 144  Q
    ||||||| |||||||| ||| || | |||||||| || || ||| | || || |||||||| |||||||||||||||||||| ||| |  |||||||| |    
T  5196834 aatttttgtggcttaaggcgatttcgttaaaagtgaatatctttatctgacgactctttctaaatagacttgctacaaaggataatttgtgcaagagata 5196735  T
Q  145 tatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcgattatgg 244  Q
    | | ||| | | | |  |||  |||||||||||||| |||||| || | ||||| ||||||||||| |||||| | || ||  | || ||||| || ||     
T  5196734 tgtgcttgatgtttcccatgtgtcttgtgcggccttatgtggtgagttagaggacagggaccatttattttttaagtgcgaccactacggtcgtttgtga 5196635  T
Q  245 ctcttgatatcgaattggcttggttttattacggt 279  Q
    || |||||  |||||||||||||| || |||||||    
T  5196634 cttttgatcgcgaattggcttggtattgttacggt 5196600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 27868976 - 27868912
Alignment:
Q  170 tgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatgg 234  Q
    |||||| |||||||||||||||  ||||| | |||||||||||||||||| |||||| |||||||    
T  27868976 tgtgcgaccttgtgtggtaaggaagaggatatggaccatttgttttttcattgtgatcattatgg 27868912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 38 - 279
Target Start/End: Original strand, 26077740 - 26077981
Alignment:
Q  38 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgca 137  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26077740 tttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaaggacaatcttcgca 26077839  T
Q  138 agagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcg 237  Q
    | || ||| | ||| |||||||  ||| ||||||||  || || |||||||||| |||||||||||| ||||||||||| ||||| || |||||||||||    
T  26077840 aaaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcgaatattatggtcg 26077939  T
Q  238 attatggctcttgatatcgaattggcttggttttattacggt 279  Q
     ||||||||  || ||||  ||||| | |||||| |||||||    
T  26077940 cttatggcttatgttatccgattggttaggttttgttacggt 26077981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 42 - 279
Target Start/End: Complemental strand, 29532561 - 29532324
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagag 141  Q
    ||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |  |||| ||    
T  29532561 atcaatttttatggcttaaagcggtaccattaaatgttaacatttttgtctggcgtctctttctgaatagacttgctacaaaggacaatttaagcaaaag 29532462  T
Q  142 aaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcgatta 241  Q
     ||| ||||||  ||||   ||   ||||||| ||||||||||| ||||| |||||||||||| |||||||| |||||||| ||| |||||| |||| |     
T  29532461 gaatgtccttccagctaataatatatcttgtgtggccttgtgtgataaggaggaggaaagggatcatttgttctttcaatgcgatcattatgatcgactt 29532362  T
Q  242 tggctcttgatatcgaattggcttggttttattacggt 279  Q
    ||||||||||||||| | |||||| || || |||||||    
T  29532361 tggctcttgatatcgcactggcttagtattgttacggt 29532324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 31423238 - 31423431
Alignment:
Q  21 tcaatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 120  Q
    |||| ||||||  ||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||| ||    
T  31423238 tcaacatcactgcagagtttaatcaatttttatggcttaaagcggttcccttaaaggttaatatttttgtctgacgtctctttctgaatagacttgcaac 31423337  T
Q  121 aaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttt 214  Q
    |||| |||| ||||||||||| ||  ||||| | | |||  ||| |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  31423338 aaagaacaaccttcgcaagaggaacgtccttgaaggtaccaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 31423431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 42 - 279
Target Start/End: Original strand, 26390260 - 26390496
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagag 141  Q
    ||||||||||||||||||  ||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |  |||  ||    
T  26390260 atcaatttttatggcttacggcggtaccattaaaggttaacatttttgtctggcgtctctttctgaatagacttgctacaacggacaatttaagcataag 26390359  T
Q  142 aaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcgatta 241  Q
     ||| |||||| |||||   ||   |||| |  ||||||||||||||||| ||| ||||||| ||||||||| |||||||| ||| ||||||||||| |     
T  26390360 gaatgtccttccggctaataatatgtcttatatggccttgtgtggtaaggaggacgaaaggggccatttgttctttcaatgcgatcattatggtcgact- 26390458  T
Q  242 tggctcttgatatcgaattggcttggttttattacggt 279  Q
    | ||||||||||||| |||| |||||| || |||||||    
T  26390459 ttgctcttgatatcgcattgacttggtattgttacggt 26390496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 10801698 - 10801779
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 123  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  10801698 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 10801779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 2959748 - 2959812
Alignment:
Q  182 tgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcgattatggct 246  Q
    |||||||||| |||||| || |||||||| || ||||||||||||||||||||||| ||||||||    
T  2959748 tgtggtaaggaggaggacagagaccatttattctttcaatgtgattattatggtcggttatggct 2959812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 31423430 - 31423473
Alignment:
Q  239 ttatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    |||||||||||||||||||||||| ||||| || ||||||||||    
T  31423430 ttatggctcttgatatcgaattggtttggtattgttacggtgtt 31423473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 667496 - 667283
Alignment:
Q  15 tggacatcaatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 114  Q
    |||||||||| ||||||  ||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  667496 tggacatcaacatcactgcagagtttaatcaatttttatggcttaaagtggttcccttaaaggttaacatttttgtttggcgtctctttctgaatagact 667397  T
Q  115 tgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttt 214  Q
    ||||||||||||||| ||||||||||| ||| | ||| |||||||| ||| |||||||||          ||||||| ||||||||||||| ||||||||    
T  667396 tgctacaaaggacaaccttcgcaagaggaatgtacttgaggctacaaatgtttcttgtgc----------ggtaaggaggaggaaagggactatttgttt 667307  T
Q  215 tttcaatgtgattattatggtcga 238  Q
    ||||||||||| ||||||||||||    
T  667306 tttcaatgtgactattatggtcga 667283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 38 - 246
Target Start/End: Original strand, 18295410 - 18295618
Alignment:
Q  38 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgca 137  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  18295410 tttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaaggataatcttcgca 18295509  T
Q  138 agagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcg 237  Q
    |||| ||| | ||  ||| |||  ||| ||||||||  || || |||||||||| |||||||||||| ||||||||||| ||||| ||||||||||||||    
T  18295510 agaggaatgttctagaggttaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcg 18295609  T
Q  238 attatggct 246  Q
    |||||||||    
T  18295610 attatggct 18295618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 15 - 282
Target Start/End: Original strand, 28604878 - 28605145
Alignment:
Q  15 tggacatcaatatcactatagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 114  Q
    ||||| |||||||||||  ||||||| |||||||||||||||||||| |||| || ||||| ||||| |||||||| |||||||| ||||||||||||||    
T  28604878 tggacttcaatatcactgcagagtttaatcaatttttatggcttaaaccggtcccattaaaggttaatatttttgtatggcgtctttttctgaatagact 28604977  T
Q  115 tgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttt 214  Q
    ||| ||||||||||| || || ||||| ||  | ||| ||| | |  |||  ||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  28604978 tgcaacaaaggacaacctgcgtaagaggaacgttcttgaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagagaccatttgttt 28605077  T
Q  215 tttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttattacggtgtt 282  Q
    || ||||||||| |||||||||| |||||||||||||||||||||||| ||||| || |||| |||||    
T  28605078 ttccaatgtgatcattatggtcggttatggctcttgatatcgaattggtttggtattgttactgtgtt 28605145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 38 - 279
Target Start/End: Complemental strand, 2894445 - 2894204
Alignment:
Q  38 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgca 137  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||| |    
T  2894445 tttgatcaatttctatggcttaaagcggttcccttaaaagttaatatttttgtttggcggctttttctgaatagacttgctacaaaggataatcttcgta 2894346  T
Q  138 agagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcg 237  Q
    |||| ||||||||| |||| ||  ||| ||||||||  || || |||||||| | |||||| | ||| ||||||||||| |||||  | |||||||||||    
T  2894345 agaggaatatccttgaggcaaccaatgtttcttgtggtgctttatgtggtaacgaggaggacatggatcatttgtttttccaatgcaactattatggtcg 2894246  T
Q  238 attatggctcttgatatcgaattggcttggttttattacggt 279  Q
     ||||||||  |||| ||| ||||| | |||||| |||||||    
T  2894245 tttatggcttatgatttcggattggttaggttttgttacggt 2894204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 42 - 278
Target Start/End: Original strand, 7218368 - 7218604
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagag 141  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | || || ||    
T  7218368 atcaatttttatggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctttttctgaatagacttgctacaaaggataatttgcgtaaaag 7218467  T
Q  142 aaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcgatta 241  Q
     ||| || || ||||||   |||  | ||||||||||||||||||||||| ||||||||| |||||||| ||||| ||||||||| |||| ||  | |||    
T  7218468 gaatgtctttgaggctaacaatgtatattgtgcggccttgtgtggtaaggaggaggaaagagaccatttatttttccaatgtgatcattacgggtggtta 7218567  T
Q  242 tggctcttgatatcgaattggcttggttttattacgg 278  Q
    ||||||||| |||||   ||||||||| || ||||||    
T  7218568 tggctcttggtatcgcggtggcttggtatttttacgg 7218604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 216
Target Start/End: Complemental strand, 17228148 - 17227966
Alignment:
Q  34 agagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatctt 133  Q
    ||||||| |||| ||||| ||||||||||| ||||| ||||| || ||||| ||||| |||||||||||||| |||||||||||||||||||||||| |     
T  17228148 agagtttcatcattttttgtggcttaaagcagttccgttaaatgtgaacatatttgtctggcgtctctttctaaatagacttgctacaaaggacaatttg 17228049  T
Q  134 cgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttt 216  Q
    ||||| || ||| ||||| | | | ||  ||   |||| ||||||||||||||| |||| ||||| |||||||||||||||||    
T  17228048 cgcaaaaggaatgtccttgatgtttcacttgtgacttgcgcggccttgtgtggtgaggtagaggacagggaccatttgttttt 17227966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 9759578 - 9759701
Alignment:
Q  99 tctttctgaatagacttgctacaaaggacaatcttcgcaagagaaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggagga 198  Q
    |||||| ||||||||||||||||||||| ||||| ||||| || ||| || || |||| ||   ||  | ||||||||| ||| ||||||||| ||| ||    
T  9759578 tctttccgaatagacttgctacaaaggataatctgcgcaaaaggaatgtctttgaggccacttttgtgtattgtgcggctttgcgtggtaaggaggatga 9759677  T
Q  199 aagggaccatttgttttttcaatg 222  Q
    |||||||||| |||||||||||||    
T  9759678 aagggaccatctgttttttcaatg 9759701  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 5391535 - 5391616
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 123  Q
    |||||||||||||| | ||||||| ||| || || ||||||||||||||||||||  | ||||||||||||||||| |||||    
T  5391535 atcaatttttatggttgaaagcggctccgttgaaggttaacatttttgtttggcgcttatttctgaatagacttgcaacaaa 5391616  T

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Target: scaffold0003 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 42 - 256
Target Start/End: Original strand, 224744 - 224958
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagag 141  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || || ||    
T  224744 atcaatttttatggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctttttctgaatagacttgctacaaaggacaatttgcgtaaaag 224843  T
Q  142 aaatatccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggtggaggaaagggaccatttgttttttcaatgtgattattatggtcgatta 241  Q
     ||| ||||| ||||||   |||  | ||||||||||||||||||||||| ||||||||| |||||||| ||||| ||||||||| |||||||  | |||    
T  224844 gaatgtccttgaggctaacaatgtatattgtgcggccttgtgtggtaaggaggaggaaagagaccatttatttttccaatgtgatcattatgggtggtta 224943  T
Q  242 tggctcttgatatcg 256  Q
    ||||||||| |||||    
T  224944 tggctcttggtatcg 224958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 11269 - 11166
Alignment:
Q  42 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagag 141  Q
    |||| ||||| ||||  |||| |||||| ||||| ||||| || ||||| ||  ||||||| |||||||||||| |||||||||| ||||| || |||||    
T  11269 atcattttttgtggcacaaagaggttccgttaaaggttaatatatttgtatgatgtctcttcctgaatagactttctacaaaggataatctgcggaagag 11170  T
Q  142 aaat 145  Q
    ||||    
T  11169 aaat 11166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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