View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_high_100 (Length: 303)

Name: NF0154_2D_high_100
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_high_100
NF0154_2D_high_100
[»] chr3 (8 HSPs)
chr3 (1-227)||(38044444-38044670)
chr3 (50-151)||(48837983-48838084)
chr3 (50-150)||(50152350-50152450)
chr3 (49-151)||(50903981-50904083)
chr3 (50-150)||(50916154-50916258)
chr3 (53-90)||(147941-147978)
chr3 (56-92)||(50823392-50823428)
chr3 (56-92)||(50852433-50852469)
[»] chr8 (5 HSPs)
chr8 (1-151)||(21634805-21634955)
chr8 (77-151)||(5515537-5515611)
chr8 (180-227)||(21634741-21634788)
chr8 (57-95)||(10583097-10583135)
chr8 (52-96)||(32735648-32735692)
[»] chr7 (9 HSPs)
chr7 (50-151)||(32089264-32089365)
chr7 (50-151)||(41812157-41812258)
chr7 (51-151)||(41706628-41706728)
chr7 (52-151)||(32096737-32096836)
chr7 (50-151)||(32093021-32093122)
chr7 (54-151)||(39128491-39128588)
chr7 (54-151)||(39478457-39478554)
chr7 (50-151)||(32087909-32088010)
chr7 (108-146)||(32089075-32089113)
[»] chr6 (5 HSPs)
chr6 (50-151)||(26217233-26217334)
chr6 (54-133)||(7618947-7619026)
chr6 (51-134)||(18871931-18872015)
chr6 (54-113)||(11187905-11187964)
chr6 (52-127)||(6845968-6846043)
[»] chr1 (7 HSPs)
chr1 (52-151)||(31141947-31142046)
chr1 (65-144)||(30272473-30272551)
chr1 (86-151)||(27402434-27402499)
chr1 (65-138)||(27981698-27981771)
chr1 (54-94)||(34470026-34470066)
chr1 (54-91)||(6760094-6760131)
chr1 (55-91)||(520521-520557)
[»] scaffold0856 (1 HSPs)
scaffold0856 (55-144)||(4895-4984)
[»] chr2 (3 HSPs)
chr2 (73-147)||(32271347-32271421)
chr2 (53-151)||(43741443-43741541)
chr2 (54-89)||(20940535-20940570)
[»] chr4 (5 HSPs)
chr4 (97-146)||(8762982-8763031)
chr4 (72-146)||(7777910-7777985)
chr4 (72-146)||(7772302-7772377)
chr4 (72-146)||(7792702-7792777)
chr4 (54-101)||(19260978-19261025)
[»] chr5 (4 HSPs)
chr5 (54-91)||(8058720-8058757)
chr5 (54-89)||(17013884-17013919)
chr5 (58-97)||(18352643-18352682)
chr5 (53-92)||(29176661-29176700)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 38044670 - 38044444
Alignment:
Q  1 gctacatctttagcttttaagcgtttatatgacacacgcgaatatccaagcttgtcccttcggggacatccgataaaattggaacgatacagagaagatt 100  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38044670 gctacgtctttagcttttaagcgtttatataacacacgcgaatatctaagcttgtcccttcggggacatccgataaaattggaacgatacagagaagatt 38044571  T
Q  101 agcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaannnnnnnnnnnnnnnnnnnnnccttcaatttcacactcgtaagttttct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                     ||||||||||||||||||||||||||||    
T  38044570 agcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaatttttttttgactttttttttccttcaatttcacactcgtaagttttct 38044471  T
Q  201 ccgttcaggtatgatttctcttctgca 227  Q
    ||||||||||||||||||| |||||||    
T  38044470 ccgttcaggtatgatttcttttctgca 38044444  T

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Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 48837983 - 48838084
Alignment:
Q  50 gcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcca 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48837983 gcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcca 48838082  T
Q  150 aa 151  Q
    ||    
T  48838083 aa 48838084  T

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Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 50152350 - 50152450
Alignment:
Q  50 gcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcca 149  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50152350 gcttgtccctttggggacatctgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcca 50152449  T
Q  150 a 150  Q
    |    
T  50152450 a 50152450  T

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Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 50903981 - 50904083
Alignment:
Q  49 agcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcc 148  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |    
T  50903981 agcttgtcacttcggggacatccgataaaattggaacgatacagagaagattagcaaggcccctgcgcaaggatgacacgcacaattcgagaaatggttc 50904080  T
Q  149 aaa 151  Q
    |||    
T  50904081 aaa 50904083  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 50916258 - 50916154
Alignment:
Q  50 gcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagc----atggcccctgcgcaaggatgacacgcacaaatcgagaaatgg 145  Q
    ||||||||||| ||| |||||||||||||||||||||||| |||||||||| ||    ||||||| ||| |||||||||||||||||||| |||||||||    
T  50916258 gcttgtccctttgggaacatccgataaaattggaacgatatagagaagattggcatggatggcccttgcacaaggatgacacgcacaaattgagaaatgg 50916159  T
Q  146 tccaa 150  Q
    |||||    
T  50916158 tccaa 50916154  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 147941 - 147978
Alignment:
Q  53 tgtcccttcggggacatccgataaaattggaacgatac 90  Q
    ||||||||||||||||||||||||||||||||||||||    
T  147941 tgtcccttcggggacatccgataaaattggaacgatac 147978  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 50823392 - 50823428
Alignment:
Q  56 cccttcggggacatccgataaaattggaacgatacag 92  Q
    |||||| ||||||||||||||||||||||||||||||    
T  50823392 cccttcagggacatccgataaaattggaacgatacag 50823428  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 50852469 - 50852433
Alignment:
Q  56 cccttcggggacatccgataaaattggaacgatacag 92  Q
    |||||| ||||||||||||||||||||||||||||||    
T  50852469 cccttcagggacatccgataaaattggaacgatacag 50852433  T

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Target: chr8 (Bit Score: 131; Significance: 6e-68; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 21634955 - 21634805
Alignment:
Q  1 gctacatctttagcttttaagcgtttatatgacacacgcgaatatccaagcttgtcccttcggggacatccgataaaattggaacgatacagagaagatt 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||  | | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21634955 gctacatctttagcttttaagcgtttatataacacacgcgaatgcctaggcttgtcccttcggggacatccgataaaattggaacgatacagagaagatt 21634856  T
Q  101 agcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21634855 agcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 21634805  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 5515537 - 5515611
Alignment:
Q  77 aattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 151  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  5515537 aattggaacgatacagagaagattagcatggcccttgcgcaaagatgacacgcacaaatcgagaaatggtccaaa 5515611  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 21634788 - 21634741
Alignment:
Q  180 tttcacactcgtaagttttctccgttcaggtatgatttctcttctgca 227  Q
    |||||||| ||||||||||||| ||||||||||||||||| |||||||    
T  21634788 tttcacacgcgtaagttttctcggttcaggtatgatttcttttctgca 21634741  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 10583135 - 10583097
Alignment:
Q  57 ccttcggggacatccgataaaattggaacgatacagaga 95  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  10583135 ccttcggggacatccgataaaattgaaacgatacagaga 10583097  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 32735648 - 32735692
Alignment:
Q  52 ttgtcccttcggggacatccgataaaattggaacgatacagagaa 96  Q
    |||||| |||| |||||||| ||||||||||||||||||||||||    
T  32735648 ttgtccattcgaggacatcccataaaattggaacgatacagagaa 32735692  T

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Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 32089365 - 32089264
Alignment:
Q  50 gcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcca 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32089365 gcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcca 32089266  T
Q  150 aa 151  Q
    ||    
T  32089265 aa 32089264  T

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Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 41812157 - 41812258
Alignment:
Q  50 gcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcca 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41812157 gcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcca 41812256  T
Q  150 aa 151  Q
    ||    
T  41812257 aa 41812258  T

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Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 41706728 - 41706628
Alignment:
Q  51 cttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaa 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41706728 cttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaa 41706629  T
Q  151 a 151  Q
    |    
T  41706628 a 41706628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 32096836 - 32096737
Alignment:
Q  52 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32096836 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 32096737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 32093122 - 32093021
Alignment:
Q  50 gcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcca 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32093122 gcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgtgcaaggatgacacgcacaaatcgagaaatggtcca 32093023  T
Q  150 aa 151  Q
    ||    
T  32093022 aa 32093021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 39128588 - 39128491
Alignment:
Q  54 gtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39128588 gtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 39128491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 39478457 - 39478554
Alignment:
Q  54 gtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39478457 gtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 39478554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 32088010 - 32087909
Alignment:
Q  50 gcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcca 149  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  32088010 gcttgtcccttcggggacatctgataaaattggaacgatacagagaagattaacatggcccctgcacaaggatgacacgcacaaatcgagaaatggtcca 32087911  T
Q  150 aa 151  Q
    ||    
T  32087910 aa 32087909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 32089075 - 32089113
Alignment:
Q  108 cccctgcgcaaggatgacacgcacaaatcgagaaatggt 146  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32089075 cccctgcgcaaggatgacacgcacaaatcgagaaatggt 32089113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 26217334 - 26217233
Alignment:
Q  50 gcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcca 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26217334 gcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcca 26217235  T
Q  150 aa 151  Q
    ||    
T  26217234 aa 26217233  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 7619026 - 7618947
Alignment:
Q  54 gtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaa 133  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||  || ||||||| ||||||||||||||    
T  7619026 gtcccttcggggacatccgataaaattggaatgatacagagaagattagcatgatccatgcgcaaagatgacacgcacaa 7618947  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 18872015 - 18871931
Alignment:
Q  51 cttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccc-tgcgcaaggatgacacgcacaaa 134  Q
    |||||||| | ||||||||| |||||| ||| || |||||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  18872015 cttgtcccattggggacatctgataaagttgaaatgatacagacaagattagcatggccccttgcgcaaagatgacacgcacaaa 18871931  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 11187905 - 11187964
Alignment:
Q  54 gtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctg 113  Q
    ||||||||| |||| ||||  |||||||||||||||||||||||||||||||||||||||    
T  11187905 gtcccttcgaggacgtccggaaaaattggaacgatacagagaagattagcatggcccctg 11187964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 6845968 - 6846043
Alignment:
Q  52 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacac 127  Q
    |||| |||| || ||| ||||||||||||||||||||| | ||||||||| || | ||||||||||||||| ||||    
T  6845968 ttgttcctttggagacttccgataaaattggaacgatataaagaagattaacaggacccctgcgcaaggatcacac 6846043  T

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Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 31142046 - 31141947
Alignment:
Q  52 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31142046 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 31141947  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 30272473 - 30272551
Alignment:
Q  65 gacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatg 144  Q
    |||||||||||||||||||| |||||||||||||||||||||| || |||||||  ||||||||||||||||||||||||    
T  30272473 gacatccgataaaattggaatgatacagagaagattagcatgg-ccatgcgcaacaatgacacgcacaaatcgagaaatg 30272551  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 27402499 - 27402434
Alignment:
Q  86 gatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 151  Q
    |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27402499 gatacagaaaaaattagcatggcccctgcacaaggatgacacgcacaaatcgagaaatggtccaaa 27402434  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 27981698 - 27981771
Alignment:
Q  65 gacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcga 138  Q
    ||||||||||||||||| ||| ||| ||||||||| ||||||  ||||  |||||||||||| |||||||||||    
T  27981698 gacatccgataaaattgaaacaatatagagaagatcagcatgagccctatgcaaggatgacatgcacaaatcga 27981771  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 34470026 - 34470066
Alignment:
Q  54 gtcccttcggggacatccgataaaattggaacgatacagag 94  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  34470026 gtcccttcggggacatccgataaaattggaatgatacagag 34470066  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 6760094 - 6760131
Alignment:
Q  54 gtcccttcggggacatccgataaaattggaacgataca 91  Q
    |||||||| |||||||||||||||||||||||||||||    
T  6760094 gtcccttcagggacatccgataaaattggaacgataca 6760131  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 520557 - 520521
Alignment:
Q  55 tcccttcggggacatccgataaaattggaacgataca 91  Q
    ||||||| || ||||||||||||||||||||||||||    
T  520557 tcccttccggaacatccgataaaattggaacgataca 520521  T

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Target: scaffold0856 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 4984 - 4895
Alignment:
Q  55 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatg 144  Q
    ||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  4984 tcccttcggggacattcgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatg 4895  T

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Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 32271421 - 32271347
Alignment:
Q  73 ataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 147  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32271421 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 32271347  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 43741443 - 43741541
Alignment:
Q  53 tgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 151  Q
    ||||||||| ||||||||||||||||||  ||| ||||| ||||||||| |||||| ||||| |||||||||||||||| |||||||||||||||||||    
T  43741443 tgtcccttcagggacatccgataaaattaaaacaatacatagaagattaacatggctcctgcacaaggatgacacgcaccaatcgagaaatggtccaaa 43741541  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 89
Target Start/End: Original strand, 20940535 - 20940570
Alignment:
Q  54 gtcccttcggggacatccgataaaattggaacgata 89  Q
    |||||||||||||||||||||||||||| |||||||    
T  20940535 gtcccttcggggacatccgataaaattgaaacgata 20940570  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 8762982 - 8763031
Alignment:
Q  97 gattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggt 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8762982 gattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggt 8763031  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 7777985 - 7777910
Alignment:
Q  72 gataaaattggaacgatacagagaagattagcatggc-ccctgcgcaaggatgacacgcacaaatcgagaaatggt 146  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| || ||| |||||||||||||||    
T  7777985 gataaaattggaacgatacagagaagattagcatggcacccggcgtaaggatggcaagcataaatcgagaaatggt 7777910  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 7772377 - 7772302
Alignment:
Q  72 gataaaattggaacgatacagagaagattagcatggc-ccctgcgcaaggatgacacgcacaaatcgagaaatggt 146  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| || ||| | |||| ||||||||    
T  7772377 gataaaattggaacgatacagagaagattagcatggcacccggcgtaaggatggcaagcatacatcgtgaaatggt 7772302  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 7792777 - 7792702
Alignment:
Q  72 gataaaattggaacgatacagagaagattagcatggc-ccctgcgcaaggatgacacgcacaaatcgagaaatggt 146  Q
    |||||||||||||||||| |||||||||||||||||| |||  || ||||||| || ||| |||||||||||||||    
T  7792777 gataaaattggaacgatatagagaagattagcatggcacccgacgtaaggatggcaagcataaatcgagaaatggt 7792702  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 19260978 - 19261025
Alignment:
Q  54 gtcccttcggggacatccgataaaattggaacgatacagagaagatta 101  Q
    ||||||||||||| | ||||| |||||||||||||||||| |||||||    
T  19260978 gtcccttcggggaaacccgattaaattggaacgatacagaaaagatta 19261025  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 8058720 - 8058757
Alignment:
Q  54 gtcccttcggggacatccgataaaattggaacgataca 91  Q
    |||||||||||||||||||||||||||||| |||||||    
T  8058720 gtcccttcggggacatccgataaaattggagcgataca 8058757  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 89
Target Start/End: Original strand, 17013884 - 17013919
Alignment:
Q  54 gtcccttcggggacatccgataaaattggaacgata 89  Q
    |||||||| |||||||||||||||||||||||||||    
T  17013884 gtcccttcagggacatccgataaaattggaacgata 17013919  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 18352643 - 18352682
Alignment:
Q  58 cttcggggacatccgataaaattggaacgatacagagaag 97  Q
    ||||||| ||||||||||||||||||| ||||||||||||    
T  18352643 cttcgggaacatccgataaaattggaatgatacagagaag 18352682  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 29176700 - 29176661
Alignment:
Q  53 tgtcccttcggggacatccgataaaattggaacgatacag 92  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  29176700 tgtcccttcgagaacatccgataaaattggaacgatacag 29176661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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