View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_high_107 (Length: 280)

Name: NF0154_2D_high_107
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_high_107
NF0154_2D_high_107
[»] chr3 (12 HSPs)
chr3 (12-235)||(27005447-27005670)
chr3 (23-224)||(36810708-36810912)
chr3 (157-235)||(33708698-33708776)
chr3 (157-235)||(33714533-33714611)
chr3 (19-125)||(36875776-36875882)
chr3 (224-280)||(27005406-27005462)
chr3 (19-125)||(33396713-33396819)
chr3 (19-125)||(37580608-37580714)
chr3 (19-125)||(33708805-33708911)
chr3 (155-225)||(37580511-37580581)
chr3 (19-125)||(33714640-33714746)
chr3 (224-268)||(36810656-36810700)
[»] chr1 (1 HSPs)
chr1 (67-125)||(52093039-52093097)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 27005670 - 27005447
Alignment:
Q  12 gatggacatcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcac 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27005670 gatgcacatcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcac 27005571  T
Q  112 ttgattgtatacaaaatccaaatccaaatccactgacagactttttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaagg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27005570 ttgattgtatacaaaatccaaatccaaatccactgacagactttttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaagg 27005471  T
Q  212 agtgcaaagaaggctgagttggtg 235  Q
    ||||||||||||||||||||||||    
T  27005470 agtgcaaagaaggctgagttggtg 27005447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 36810912 - 36810708
Alignment:
Q  23 agaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattgtata 122  Q
    ||||||||||||||||||||||| ||||||||||| || || ||||| |||| |||||||  ||| | |||||||| ||||||||||||||||| |||||    
T  36810912 agaagttgcatgttagggaacatgaaagcaaacatcttgatgtcttcttcttgcaaacgtaaatttttagccaaatggagagacttcacttgatggtata 36810813  T
Q  123 caaaatccaaatccaaatccactgacagactt------tttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgc 216  Q
    | |   |  ||||||||||||||||| |  ||      ||||| |||| || |||||||||||||||||| | ||||||| || ||||||||||||||||    
T  36810812 cta---ctgaatccaaatccactgacggttttgagccatttcctatatttgttgactccattctgatctcagcgagcaaatgaaagttcctaaggagtgc 36810716  T
Q  217 aaagaagg 224  Q
    ||||||||    
T  36810715 aaagaagg 36810708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 33708776 - 33708698
Alignment:
Q  157 tccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaagaaggctgagttggtg 235  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33708776 tccaatatttgttgactccattctgatctcagtgagcaaaggacagttcctaaggagtgcaaagaaggctgaattggtg 33708698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 33714611 - 33714533
Alignment:
Q  157 tccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaagaaggctgagttggtg 235  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33714611 tccaatatttgttgactccattctgatctcagtgagcaaaggacagttcctaaggagtgcaaagaaggctgaattggtg 33714533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 36875776 - 36875882
Alignment:
Q  19 atcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattg 118  Q
    ||||||||||||||||||||| ||| | |||||||||||||| || |||||||||| |||| ||| ||||| |||||||| ||||||||||| ||||| |    
T  36875776 atcaagaagttgcatgttaggaaacgtaaaagcaaacatgttgatgtcttcatcttgcaaatgtgaattgttagccaaatggagagacttcagttgatgg 36875875  T
Q  119 tatacaa 125  Q
    |||||||    
T  36875876 tatacaa 36875882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 27005406 - 27005462
Alignment:
Q  224 gctgagttggtgtctataaacctcagcggttgtcaccagctcaccaactcagccttc 280  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27005406 gctgatttggtgtctataaacctcagcggttgtcaccagctcaccaactcagccttc 27005462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 33396713 - 33396819
Alignment:
Q  19 atcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattg 118  Q
    ||||||||| ||||| ||||| ||||| |||| ||||||| | || |||||||||| |||  ||| ||||| |||||||| ||||||||||||||||| |    
T  33396713 atcaagaagctgcatattaggaaacataaaagaaaacatggtgatgtcttcatcttgcaattgtgaattgtaagccaaatggagagacttcacttgatgg 33396812  T
Q  119 tatacaa 125  Q
    |||||||    
T  33396813 tatacaa 33396819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 37580714 - 37580608
Alignment:
Q  19 atcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattg 118  Q
    ||||||||||||||| ||||| ||||  |||||||||||||  || |||||||||  ||||| || ||||  |||||||| ||||||||||||||||| |    
T  37580714 atcaagaagttgcatattaggaaacaggaaagcaaacatgtggatgtcttcatctcgcaaacatgaattggaagccaaatggagagacttcacttgatgg 37580615  T
Q  119 tatacaa 125  Q
    |||||||    
T  37580614 tatacaa 37580608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 33708911 - 33708805
Alignment:
Q  19 atcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattg 118  Q
    ||||||||||||||| ||||| ||||||||||||||  | || || | || |||||  |||| || ||||| |||||||| ||||||||||||||||| |    
T  33708911 atcaagaagttgcatattaggaaacattaaagcaaatcttttgatgtgtttatcttgtaaacctgaattgtgagccaaatggagagacttcacttgatgg 33708812  T
Q  119 tatacaa 125  Q
    |||||||    
T  33708811 tatacaa 33708805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 37580581 - 37580511
Alignment:
Q  155 tttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaagaaggc 225  Q
    ||||||||  ||| |||||||||| ||||||| ||||| |||||||||||| ||||||||||||| |||||    
T  37580581 tttccaattcctgttgactccattttgatctcagtgagtaaaggacagttcttaaggagtgcaaacaaggc 37580511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 33714746 - 33714640
Alignment:
Q  19 atcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattg 118  Q
    |||||||| ||||||  | || ||||||||||||||| | || || | |||||||| ||||| || ||||| |||||||| |||||||||||| |||| |    
T  33714746 atcaagaaattgcatacttggaaacattaaagcaaaccttttgatgtgttcatcttgcaaacctgaattgtgagccaaatggagagacttcacctgatgg 33714647  T
Q  119 tatacaa 125  Q
    ||| |||    
T  33714646 tattcaa 33714640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 36810656 - 36810700
Alignment:
Q  224 gctgagttggtgtctataaacctcagcggttgtcaccagctcacc 268  Q
    ||||| ||||||||||||||| ||||||||||| |||||||||||    
T  36810656 gctgatttggtgtctataaacgtcagcggttgttaccagctcacc 36810700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 52093039 - 52093097
Alignment:
Q  67 ttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattgtatacaa 125  Q
    ||||| |||||| ||||||||| | ||||||| ||||||||||||||||  ||||||||    
T  52093039 ttcatttttcaaccgtggattgcctgccaaatggagagacttcacttgagggtatacaa 52093097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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