View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_high_112 (Length: 268)
Name: NF0154_2D_high_112
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_high_112 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 27803421 - 27803669
Alignment:
| Q |
1 |
taaggtttatattcatataacttgtcttattcaaaactaaaactacatgatgacctttgtcttttcgaggattacatttatgcttttgaaacctctcttt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27803421 |
taaggtttatactcatataacttgtcttattcgaaattaaaattacatgatgacctttgtcttttcgaggattacatttatgcttttgaaacctctcttt |
27803520 |
T |
|
| Q |
101 |
ccccaagatttaatttttctatttctctaacaatactacccaatgaagatatattgcgaagttgttggctaaccattttattttgaaatgcataattaaa |
200 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27803521 |
ccctaagatttaatttttctatttctttaacaatattacccaatgaagatatattgcgaagttgttggctaaccattttattttgaaatgcataattaaa |
27803620 |
T |
|
| Q |
201 |
gcatgttgtagccatttaaactaattcatactaaagaattattgtcatac |
250 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
27803621 |
gcatgtt-tagccatttaaactaattcatactcaagaatcattgtcatac |
27803669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 250
Target Start/End: Original strand, 27800066 - 27800280
Alignment:
| Q |
35 |
aactaaaactacatgatgacctttgtcttttcgaggattacatttatgcttttgaaacctctctttccccaagatttaatttttctatttctctaacaat |
134 |
Q |
| |
|
||||||| ||| || || ||||||||||||| |||||| | ||| | |||| |||| ||| |||||| || ||||||||| ||||||| | | ||||| |
|
|
| T |
27800066 |
aactaaagctatataataacctttgtctttttgaggataatttttctattttttaaacttctatttcccaaa-atttaatttgtctatttgtttgacaat |
27800164 |
T |
|
| Q |
135 |
actacccaatgaagatatattgcgaagttgttggctaaccattttattttgaaatgcataattaaagcatgttgtagccatttaaactaattcatactaa |
234 |
Q |
| |
|
| | |||| |||| |||| |||||| || |||||||||||| ||| |||| | || |||| || |||| |||||||||||||||||||||||| | |
|
|
| T |
27800165 |
atcaaccaactaagacatatcttgaagttcttagctaaccattttctttctaaatacttacttaaggcttgttctagccatttaaactaattcatactca |
27800264 |
T |
|
| Q |
235 |
agaattattgtcatac |
250 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
27800265 |
agaatcattgtcatac |
27800280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 23956027 - 23955956
Alignment:
| Q |
158 |
gaagttgttggctaaccattttattttgaaatgcataattaaagcatgttgtagccatttaaactaattcat |
229 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| ||||||||||| | |||||| |||||||||||| ||||||| |
|
|
| T |
23956027 |
gaagttgttggctaaccattttctttcgaactgcataattaaggtatgttgcagccatttaaaccaattcat |
23955956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1887 times since January 2019
Visitors: 2200