View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_high_118 (Length: 252)
Name: NF0154_2D_high_118
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_high_118 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 106 - 240
Target Start/End: Complemental strand, 7177548 - 7177414
Alignment:
| Q |
106 |
gatgttcttgttctgccacatcttctgcgccaacttgttcttgattctgaaggtcttgtgtgatggcattttcatttttcacctccgagatgcctgagga |
205 |
Q |
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| T |
7177548 |
gatgttcttgttctgccacatcttctgcaccaacttgttcttgattctgaaggtcttgtgtgatggcattttcatttttcacctccgagatgcctgagga |
7177449 |
T |
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| Q |
206 |
ctgcaccaagcatggttgtaaaccctaacaccaaa |
240 |
Q |
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| T |
7177448 |
ctgcaccaagcatggttgtaaaccctaacaccaaa |
7177414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 7177589 - 7177697
Alignment:
| Q |
1 |
acattgttaagtacattgttaatgcaatgtacgttgagtaactaagcaacctactattcatttatttgttataacatttcaattattgttctaacatatt |
100 |
Q |
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| T |
7177589 |
acattgttaagtacattgttaatgcaatgtacattgagtaactaagaaacctacaattcatttatttgttataacatttcaattattgttctaacatatt |
7177688 |
T |
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| Q |
101 |
gtattgatg |
109 |
Q |
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||||||||| |
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| T |
7177689 |
gtattgatg |
7177697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 107 - 237
Target Start/End: Complemental strand, 46493538 - 46493408
Alignment:
| Q |
107 |
atgttcttgttctgccacatcttctgcgccaacttgttcttgattctgaaggtcttgtgtgatggcattttcatttttcacctccgagatgcctgaggac |
206 |
Q |
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| T |
46493538 |
atgtccttgttcttcctcatcttctgcaccaacttcttcttgattctcaaggtcttgtgtgacgacgttttcaattctcacctccgagatgcttgaggac |
46493439 |
T |
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| Q |
207 |
tgcaccaagcatggttgtaaaccctaacacc |
237 |
Q |
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| T |
46493438 |
tgcaccgagcatgcttgtaaaccctaacacc |
46493408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 46491514 - 46491383
Alignment:
| Q |
106 |
gatgttcttgttctgccacatcttctgcgccaacttgttcttgattctgaaggtcttgtgtgatggcattttcatttttcacctccgagatgcctgagga |
205 |
Q |
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| T |
46491514 |
gatgtccttgttcttcctcatcttatgcaccaacttcttcttgattctcaaggttttgtgtgacggcattttcaatactcaccacctagatgcttaagga |
46491415 |
T |
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| Q |
206 |
ctgcaccaagcatggttgtaaaccctaacacc |
237 |
Q |
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| T |
46491414 |
ctgcaccgagcatgcttgtaaaccctaacacc |
46491383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 46493866 - 46493986
Alignment:
| Q |
107 |
atgttcttgttctgccacatcttctgcgccaacttgttcttgattctgaaggtcttgtgtgatggcattttcatttttcacctccgagatgcctgaggac |
206 |
Q |
| |
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|||| |||||||| || |||||||||| ||||||| ||||||||||| |||||||||||||| |||||||| || |||||||||||||| ||||||| |
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| T |
46493866 |
atgtccttgttcttcctcatcttctgcaccaacttcttcttgattctcaaggtcttgtgtgacaacattttcaattctcacctccgagatgtctgaggat |
46493965 |
T |
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| Q |
207 |
tgcaccaagcatggttgtaaa |
227 |
Q |
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|||| | |||||| ||||||| |
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| T |
46493966 |
tgcatcgagcatgcttgtaaa |
46493986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 7167660 - 7167735
Alignment:
| Q |
34 |
ttgagtaactaagcaacctactattcatttatttgttataacatttcaattattgttctaacatattgtattgatg |
109 |
Q |
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| T |
7167660 |
ttgagtaattaagaaacttactattcatttatttgttataacatttttatgattgttctaacatattgtattgatg |
7167735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 235
Target Start/End: Original strand, 46492013 - 46492124
Alignment:
| Q |
124 |
catcttctgcgccaacttgttcttgattctgaaggtcttgtgtgatggcattttcatttttcacctccgagatgcctgaggactgcaccaagcatggttg |
223 |
Q |
| |
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|||||| ||| ||||||| ||||||||||| ||| |||||||||| |||||||||| | |||||||| ||||| | ||||||||| | |||||| ||| |
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| T |
46492013 |
catcttttgcaccaacttcttcttgattctcaagatcttgtgtgacggcattttcaatactcacctcctagatgtttaaggactgcatcgagcatgcttg |
46492112 |
T |
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| Q |
224 |
taaaccctaaca |
235 |
Q |
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|||||||||||| |
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| T |
46492113 |
taaaccctaaca |
46492124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 7167436 - 7167336
Alignment:
| Q |
137 |
aacttgttcttgattctgaaggtcttgtgtgatggcattttcatttttcacctccgagatgcctgaggactgcaccaagcatggttgtaaaccctaacac |
236 |
Q |
| |
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||||| ||||||||| |||||||||||||||| | |||||||| | ||||||| |||||| ||||||||||||| | |||| |||||||||||| ||| |
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| T |
7167436 |
aacttcttcttgattatgaaggtcttgtgtgacgacattttcaactctcacctctgagatgaatgaggactgcaccgaacatgcttgtaaaccctagcac |
7167337 |
T |
|
| Q |
237 |
c |
237 |
Q |
| |
|
| |
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|
| T |
7167336 |
c |
7167336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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