View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_high_120 (Length: 248)

Name: NF0154_2D_high_120
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_high_120
NF0154_2D_high_120
[»] chr2 (3 HSPs)
chr2 (105-232)||(41939600-41939727)
chr2 (1-109)||(41939413-41939521)
chr2 (1-107)||(36259958-36260064)
[»] chr7 (2 HSPs)
chr7 (1-104)||(36569929-36570032)
chr7 (112-192)||(36570118-36570198)
[»] chr8 (2 HSPs)
chr8 (1-107)||(13516834-13516940)
chr8 (1-107)||(13606367-13606473)
[»] chr1 (3 HSPs)
chr1 (16-101)||(21035763-21035848)
chr1 (4-64)||(41939895-41939955)
chr1 (112-209)||(21035565-21035662)
[»] chr4 (2 HSPs)
chr4 (1-107)||(39300424-39300530)
chr4 (1-83)||(19333388-19333470)
[»] chr5 (2 HSPs)
chr5 (1-86)||(22295977-22296062)
chr5 (19-79)||(26880381-26880441)


Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 105 - 232
Target Start/End: Original strand, 41939600 - 41939727
Alignment:
Q  105 tgggaaactttggtattgttgttgtgggtccgattttaagcacaaaagatcacttaaagatcatatcaaggcttttggaaatggacataaagcttatgga 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41939600 tgggaaactttggtattgttgttgtgggtccgattttaagcacaaaagatcacttaaagatcatatcaaggcttttggaaatggacataaagcttatgga 41939699  T
Q  205 attgacgaatgtcttgatcaagatgatg 232  Q
    ||||||||||||||||||||||||||||    
T  41939700 attgacgaatgtcttgatcaagatgatg 41939727  T

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Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 41939521 - 41939413
Alignment:
Q  1 ccatgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatccaggtgcacaacaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41939521 ccatgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatccaggtgcacaacaat 41939422  T
Q  101 aacatggga 109  Q
    |||||||||    
T  41939421 aacatggga 41939413  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 36259958 - 36260064
Alignment:
Q  1 ccatgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatccaggtgcacaacaat 100  Q
    ||||||||||| |||||||| ||||| || ||||| ||||| |||| ||||||||||||||||||||  |||||||||||||| ||  | ||||||||||    
T  36259958 ccatgctttcttttgtaatgagtttggagagttctgaaatccttcaatggttttgctcttggatgattgatgttgttcttgcaaccgtgagcacaacaat 36260057  T
Q  101 aacatgg 107  Q
    |||||||    
T  36260058 aacatgg 36260064  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 36570032 - 36569929
Alignment:
Q  1 ccatgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatccaggtgcacaacaat 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||  |||| || ||||||||||| |    
T  36570032 ccatgttttctcttgtaatgtgtttgaagtgttctaaaatctttgagaggctttgctcttggatgatcaatgttgtttctgcaccctggtgcacaacagt 36569933  T
Q  101 aaca 104  Q
    ||||    
T  36569932 aaca 36569929  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 36570118 - 36570198
Alignment:
Q  112 ctttggtattgttgttgtgggtccgattttaagcacaaaagatcacttaaagatcatatcaaggcttttggaaatggacat 192  Q
    ||||||||||||   ||||| || |||||||| ||||| || || ||||||||||||||||| |||||||||| |||||||    
T  36570118 ctttggtattgtatctgtggttctgattttaaacacaagaggtctcttaaagatcatatcaaagcttttggaagtggacat 36570198  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 13516834 - 13516940
Alignment:
Q  1 ccatgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatccaggtgcacaacaat 100  Q
    |||||||||||||| |||||||||||||| |||||||||||||| || || |||||||| ||||| |||||||||| |||||| || |||||||||||||    
T  13516834 ccatgctttctcttataatgtgtttgaagagttctaaaatctttgagaggctttgctctaggatggtcaatgttgtgcttgcaacctggtgcacaacaat 13516933  T
Q  101 aacatgg 107  Q
    | |||||    
T  13516934 agcatgg 13516940  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 13606367 - 13606473
Alignment:
Q  1 ccatgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatccaggtgcacaacaat 100  Q
    |||||||||||||| |||||||||||||| |||||||||||||| || || |||||||| ||||| |||||||||| |||||| || |||||||||||||    
T  13606367 ccatgctttctcttataatgtgtttgaagagttctaaaatctttgagaggctttgctctaggatggtcaatgttgtgcttgcaacctggtgcacaacaat 13606466  T
Q  101 aacatgg 107  Q
    | |||||    
T  13606467 agcatgg 13606473  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 21035763 - 21035848
Alignment:
Q  16 taatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatccaggtgcacaacaata 101  Q
    |||||||||||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| |||| || |||| |||||||||    
T  21035763 taatgtgtttgaagtgttctgaaatctttcaatggctttgctcttgggtgatcaatgttgttcctgcaacctggtgaacaacaata 21035848  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 41939955 - 41939895
Alignment:
Q  4 tgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggat 64  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||||| |||| |||||||    
T  41939955 tgctttctcttgtagtgtgtttgaagggttctgaaatctttcagtggtcttgcccttggat 41939895  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 21035662 - 21035565
Alignment:
Q  112 ctttggtattgttgttgtgggtccgattttaagcacaaaagatcacttaaagatcatatcaaggcttttggaaatggacataaagcttatggaattga 209  Q
    ||||||||||||  |||||| || ||||||||||| ||  |||| |||||||||||||| |  |||||||| | ||| |||   ||||||||||||||    
T  21035662 ctttggtattgtctttgtggttcggattttaagcataagcgatcgcttaaagatcatataagagcttttgggagtggtcatgctgcttatggaattga 21035565  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 39300530 - 39300424
Alignment:
Q  1 ccatgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatccaggtgcacaacaat 100  Q
    |||||||| |||||||| ||||| || |||||||| ||||| |||| ||| || ||||||||||| |||||||||||||| |||||   || ||||||||    
T  39300530 ccatgcttcctcttgtagtgtgtctgcagtgttctgaaatccttcaatggcttagctcttggatgctcaatgttgttcttacatccctttgaacaacaat 39300431  T
Q  101 aacatgg 107  Q
    | |||||    
T  39300430 agcatgg 39300424  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 19333470 - 19333388
Alignment:
Q  1 ccatgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgca 83  Q
    ||||| ||||| ||||| || ||||| || |||||||| |||||||  || || |||||||||||||  ||||||||||||||    
T  19333470 ccatgttttcttttgtagtgagtttggagagttctaaagtctttcaaaggcttagctcttggatgattgatgttgttcttgca 19333388  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 22295977 - 22296062
Alignment:
Q  1 ccatgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatcc 86  Q
    |||||||| |||||||| ||||||||||||||||| ||||| || |||||  |||  |||||||| || |||||||||||||||||    
T  22295977 ccatgcttcctcttgtagtgtgtttgaagtgttctgaaatccttgagtggccttgaccttggatgctctatgttgttcttgcatcc 22296062  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 26880441 - 26880381
Alignment:
Q  19 tgtgtttgaagtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttct 79  Q
    ||||| || |||||||| ||||| |||| ||| || ||||||||||| |||||||||||||    
T  26880441 tgtgtctgcagtgttctgaaatccttcaatggcttagctcttggatgctcaatgttgttct 26880381  T

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