View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_high_121 (Length: 248)

Name: NF0154_2D_high_121
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_high_121
NF0154_2D_high_121
[»] chr8 (9 HSPs)
chr8 (20-176)||(24479361-24479517)
chr8 (131-176)||(4054174-4054219)
chr8 (131-176)||(42768342-42768387)
chr8 (128-176)||(34186745-34186793)
chr8 (132-176)||(36660339-36660383)
chr8 (130-174)||(37449312-37449356)
chr8 (130-176)||(12898816-12898862)
chr8 (122-176)||(36251464-36251518)
chr8 (130-174)||(27325898-27325942)
[»] chr6 (8 HSPs)
chr6 (122-176)||(1156858-1156912)
chr6 (129-176)||(32316814-32316861)
chr6 (130-176)||(33430249-33430295)
chr6 (131-176)||(552931-552976)
chr6 (131-176)||(14818070-14818115)
chr6 (130-176)||(15974746-15974792)
chr6 (129-158)||(8098495-8098524)
chr6 (131-176)||(31077932-31077977)
[»] chr5 (19 HSPs)
chr5 (126-176)||(5168321-5168371)
chr5 (131-176)||(7287077-7287122)
chr5 (132-176)||(1764362-1764406)
chr5 (121-176)||(1671680-1671735)
chr5 (130-176)||(18258680-18258726)
chr5 (130-176)||(26791131-26791177)
chr5 (130-176)||(36739086-36739132)
chr5 (131-176)||(28306020-28306065)
chr5 (131-176)||(33037658-33037703)
chr5 (132-176)||(13168660-13168704)
chr5 (129-176)||(14051201-14051248)
chr5 (134-176)||(2972462-2972504)
chr5 (126-176)||(15479607-15479657)
chr5 (130-176)||(28467340-28467386)
chr5 (139-176)||(7076464-7076501)
chr5 (127-155)||(1079848-1079876)
chr5 (130-170)||(1274501-1274541)
chr5 (130-170)||(8687035-8687075)
chr5 (130-170)||(35634722-35634762)
[»] chr4 (16 HSPs)
chr4 (126-176)||(36178044-36178094)
chr4 (130-176)||(29175363-29175409)
chr4 (130-176)||(31641452-31641498)
chr4 (130-176)||(44539872-44539918)
chr4 (131-176)||(39440622-39440667)
chr4 (129-172)||(26724858-26724901)
chr4 (130-176)||(23369219-23369265)
chr4 (130-176)||(26732363-26732409)
chr4 (130-176)||(37297186-37297232)
chr4 (130-176)||(51986180-51986226)
chr4 (127-176)||(27965123-27965172)
chr4 (131-176)||(53801647-53801692)
chr4 (134-173)||(11068829-11068868)
chr4 (131-174)||(43175124-43175167)
chr4 (130-176)||(27050973-27051019)
chr4 (131-176)||(38376378-38376423)
[»] chr7 (7 HSPs)
chr7 (129-174)||(24614202-24614247)
chr7 (131-176)||(41989628-41989673)
chr7 (131-176)||(38956506-38956551)
chr7 (130-173)||(43942773-43942816)
chr7 (130-176)||(3937010-3937056)
chr7 (130-176)||(25192804-25192850)
chr7 (129-176)||(41189427-41189476)
[»] chr1 (20 HSPs)
chr1 (129-176)||(33100946-33100993)
chr1 (131-174)||(44519039-44519082)
chr1 (130-176)||(19055646-19055692)
chr1 (130-176)||(27464944-27464990)
chr1 (130-176)||(31088319-31088365)
chr1 (130-176)||(45121368-45121414)
chr1 (131-176)||(15469945-15469989)
chr1 (131-176)||(26469497-26469542)
chr1 (131-176)||(48470777-48470822)
chr1 (131-176)||(50726136-50726181)
chr1 (130-176)||(649907-649953)
chr1 (131-165)||(6693294-6693328)
chr1 (131-176)||(8350087-8350132)
chr1 (135-176)||(35369838-35369879)
chr1 (131-176)||(37685467-37685512)
chr1 (131-176)||(37700006-37700051)
chr1 (128-176)||(52576186-52576235)
chr1 (130-158)||(29359781-29359809)
chr1 (127-171)||(30570667-30570711)
chr1 (127-171)||(49647035-49647079)
[»] chr2 (15 HSPs)
chr2 (130-176)||(9647270-9647316)
chr2 (130-176)||(9990829-9990875)
chr2 (130-176)||(32477470-32477516)
chr2 (130-176)||(42421785-42421831)
chr2 (129-176)||(41195722-41195769)
chr2 (130-176)||(18254096-18254142)
chr2 (130-176)||(22888704-22888750)
chr2 (130-174)||(1248826-1248870)
chr2 (134-176)||(6049236-6049278)
chr2 (130-176)||(9194379-9194425)
chr2 (130-176)||(9760156-9760202)
chr2 (130-176)||(21611542-21611588)
chr2 (130-176)||(37737858-37737904)
chr2 (132-176)||(9207728-9207772)
chr2 (124-176)||(27490611-27490663)
[»] chr3 (20 HSPs)
chr3 (131-176)||(36670902-36670947)
chr3 (131-176)||(37503635-37503680)
chr3 (129-176)||(41309255-41309302)
chr3 (130-176)||(27541389-27541435)
chr3 (130-176)||(33939376-33939422)
chr3 (130-176)||(46624045-46624091)
chr3 (131-176)||(13735868-13735913)
chr3 (131-176)||(16969454-16969499)
chr3 (130-175)||(31157564-31157609)
chr3 (131-176)||(32924169-32924214)
chr3 (127-176)||(52939789-52939838)
chr3 (132-176)||(35597300-35597344)
chr3 (129-172)||(55151603-55151646)
chr3 (134-176)||(42358529-42358571)
chr3 (130-176)||(52326157-52326203)
chr3 (131-176)||(7934112-7934157)
chr3 (131-176)||(19149128-19149173)
chr3 (131-176)||(42356972-42357017)
chr3 (130-176)||(42478095-42478143)
chr3 (131-176)||(44413283-44413328)
[»] scaffold0199 (1 HSPs)
scaffold0199 (130-176)||(8806-8852)
[»] scaffold0056 (1 HSPs)
scaffold0056 (130-176)||(76506-76552)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 24479517 - 24479361
Alignment:
Q  20 aattccaccattgcatgacccaatctacaaagaagagggatggttgtgcatatgcaacaacaagtgttacacacccaatccatgatgacattaggttacc 119  Q
    ||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24479517 aattccaccattgcaagacccaatctacaaatcagagggatggttgtgcatatgcaacaacaagtgttacacacccaatccatgatgacattaggttacc 24479418  T
Q  120 ttttatgtttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
     |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  24479417 ctttatgtttagagttgtgttatttgagcattcatatatatgataacttttgtgaca 24479361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 4054174 - 4054219
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| |||||| ||| |||||||||||||    
T  4054174 gagttgtgttatttgaacatttatatatgtgacaacttttgtgaca 4054219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 42768387 - 42768342
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| |||||| ||||||||||    
T  42768387 gagttgtgttatttgaacatccatatatgtgataatttttgtgaca 42768342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 34186793 - 34186745
Alignment:
Q  128 ttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||| |||| || ||| |||||||||||||    
T  34186793 ttagagttgtgttatttgaacatccatacatgtgacaacttttgtgaca 34186745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 36660339 - 36660383
Alignment:
Q  132 agttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||| |||| || |||||||||||||||||    
T  36660339 agttgtgttatttgaacatccataaatgtgataacttttgtgaca 36660383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 37449312 - 37449356
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtga 174  Q
    |||||||||||||||||| || ||||||| |||||||||||||||    
T  37449312 agagttgtgttatttgaatatccatatatgtgataacttttgtga 37449356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 12898816 - 12898862
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||| |||||||||||||| ||||||| ||| |||||||||||||    
T  12898816 agagttatgttatttgaacatccatatatgtgacaacttttgtgaca 12898862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 36251518 - 36251464
Alignment:
Q  122 ttatgtttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||| || | |||||||||||||| ||||||| |||||||||| ||||||    
T  36251518 ttatgtttaaagctctgttatttgaacatccatatatgtgataactttcgtgaca 36251464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 27325942 - 27325898
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtga 174  Q
    ||||||||||||||||||||| ||||||| ||| |||||| ||||    
T  27325942 agagttgtgttatttgaacatccatatatgtgacaactttcgtga 27325898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 1156912 - 1156858
Alignment:
Q  122 ttatgtttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||| |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  1156912 ttatttttagagttgtgttatttgaacatccatatatttgataacttttgtgaca 1156858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 32316814 - 32316861
Alignment:
Q  129 tagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  32316814 tagagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 32316861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 33430249 - 33430295
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||| |||||||||||| ||| |||||||||||||    
T  33430249 agagttgtgttatttggacattcatatatgtgacaacttttgtgaca 33430295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 552976 - 552931
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  552976 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 552931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 14818115 - 14818070
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| |||||| ||| |||||||||||||    
T  14818115 gagttgtgttatttgaacatttatatatatgacaacttttgtgaca 14818070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 15974792 - 15974746
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| | | |||||||||||||    
T  15974792 agagttgtgttatttgaacatccatatatgtaacaacttttgtgaca 15974746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 158
Target Start/End: Original strand, 8098495 - 8098524
Alignment:
Q  129 tagagttgtgttatttgaacattcatatat 158  Q
    ||||||||||||||||||||||||||||||    
T  8098495 tagagttgtgttatttgaacattcatatat 8098524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 31077977 - 31077932
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||| ||||||| || ||| |||||||||||||    
T  31077977 gagttgtgttatttgaatattcatacatgtgacaacttttgtgaca 31077932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 5168371 - 5168321
Alignment:
Q  126 gtttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  5168371 gtttagagttgtgttatttgaacattcatatatatgacaacttttgtgaca 5168321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 7287077 - 7287122
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||    
T  7287077 gagttgtgttatttgaacattcatatatgtgacaacttttgtgaca 7287122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 1764406 - 1764362
Alignment:
Q  132 agttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||    
T  1764406 agttgtgttatttgaacattcatatatgtgacaacttttgtgaca 1764362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 1671735 - 1671680
Alignment:
Q  121 tttatgtttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||| | ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  1671735 tttatggtaagagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 1671680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 18258680 - 18258726
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  18258680 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 18258726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 26791131 - 26791177
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  26791131 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 26791177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 36739132 - 36739086
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||||||    
T  36739132 agagttgtgttatttgaacatccatatatgtgataatttttgtgaca 36739086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 28306020 - 28306065
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  28306020 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 28306065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 33037703 - 33037658
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  33037703 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 33037658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 13168704 - 13168660
Alignment:
Q  132 agttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||| ||||||||||||| ||| |||||||||||||    
T  13168704 agttgtgttatttcaacattcatatatgtgacaacttttgtgaca 13168660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 14051201 - 14051248
Alignment:
Q  129 tagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||  ||||| ||||||| |||||||||||||||||    
T  14051201 tagagttgtgttattcaaacatccatatatgtgataacttttgtgaca 14051248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 2972504 - 2972462
Alignment:
Q  134 ttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||| |||||| ||| |||||||||||||    
T  2972504 ttgtgttatttgaacatttatatatgtgacaacttttgtgaca 2972462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 15479657 - 15479607
Alignment:
Q  126 gtttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||| |||||||||||||||||||| |||| || ||| |||||||||||||    
T  15479657 gttttgagttgtgttatttgaacatccataaatgtgacaacttttgtgaca 15479607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 28467340 - 28467386
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||| ||||||||||||||| ||| || ||||||||||    
T  28467340 agagttgtgttatctgaacattcatatatgtgacaatttttgtgaca 28467386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 7076464 - 7076501
Alignment:
Q  139 ttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  7076464 ttatttgaacattcatatatgtgacaacttttgtgaca 7076501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 1079848 - 1079876
Alignment:
Q  127 tttagagttgtgttatttgaacattcata 155  Q
    |||||||||||||||||||||||||||||    
T  1079848 tttagagttgtgttatttgaacattcata 1079876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 1274541 - 1274501
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataactttt 170  Q
    ||||||||||||||||||||| ||||||| ||| |||||||    
T  1274541 agagttgtgttatttgaacatccatatatgtgacaactttt 1274501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 8687075 - 8687035
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataactttt 170  Q
    ||||| ||||||||||||||||||||||| ||| |||||||    
T  8687075 agagtagtgttatttgaacattcatatatgtgacaactttt 8687035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 35634722 - 35634762
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataactttt 170  Q
    ||||||||||||||||||||| ||||||| ||| |||||||    
T  35634722 agagttgtgttatttgaacatccatatatgtgacaactttt 35634762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 36178094 - 36178044
Alignment:
Q  126 gtttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  36178094 gtttagagttgtgttatttgaacatttatatatgtgataacttttgtgaca 36178044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 29175409 - 29175363
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  29175409 agagttgtgttatttgaacattcatatatgtgacaacttttgtgaca 29175363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 31641452 - 31641498
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||    
T  31641452 agagttgtgttatttgaacattcatatacgtgataacttttgtgaca 31641498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 44539918 - 44539872
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  44539918 agagttgtgttatttgaacattcatatatgtgacaacttttgtgaca 44539872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 39440667 - 39440622
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||    
T  39440667 gagttgtgttatttgaacattcatatatgtgacaacttttgtgaca 39440622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 26724858 - 26724901
Alignment:
Q  129 tagagttgtgttatttgaacattcatatatctgataacttttgt 172  Q
    |||||||||||||||||||||| ||||||| |||||||||||||    
T  26724858 tagagttgtgttatttgaacatccatatatgtgataacttttgt 26724901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 23369219 - 23369265
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  23369219 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 23369265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 26732409 - 26732363
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  26732409 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 26732363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 37297232 - 37297186
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  37297232 agagttgtgttatttgaacatccatatatttgacaacttttgtgaca 37297186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 51986226 - 51986180
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  51986226 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 51986180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 27965172 - 27965123
Alignment:
Q  127 tttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||||| ||||||| ||| ||||| |||||||    
T  27965172 tttagagttgtgttatttgaacatccatatatgtgacaacttctgtgaca 27965123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 53801647 - 53801692
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  53801647 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 53801692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 11068868 - 11068829
Alignment:
Q  134 ttgtgttatttgaacattcatatatctgataacttttgtg 173  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  11068868 ttgtgttatttgaacattcatatatgtgacaacttttgtg 11068829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 43175167 - 43175124
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtga 174  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||    
T  43175167 gagttgtgttatttgaacatccatatatgtgacaacttttgtga 43175124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 27050973 - 27051019
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||| ||||||||||||||||||||| || ||| |||||||||||||    
T  27050973 agagatgtgttatttgaacattcataaatgtgacaacttttgtgaca 27051019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 38376378 - 38376423
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||  |||||| |||||| ||||||||||    
T  38376378 gagttgtgttatttgaacatctatatatgtgataatttttgtgaca 38376423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 24614202 - 24614247
Alignment:
Q  129 tagagttgtgttatttgaacattcatatatctgataacttttgtga 174  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  24614202 tagagttgtgttatttgaacattcatatatgtgataacttttgtga 24614247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 41989628 - 41989673
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||    
T  41989628 gagttgtgttatttgaacatccatatatgtgataacttttgtgaca 41989673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 38956506 - 38956551
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  38956506 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 38956551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 173
Target Start/End: Complemental strand, 43942816 - 43942773
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtg 173  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||    
T  43942816 agagttgtgttatttgaacatccatatatgtgataatttttgtg 43942773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 3937010 - 3937056
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| |||| || ||| |||||||||||||    
T  3937010 agagttgtgttatttgaacatccatacatgtgacaacttttgtgaca 3937056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 25192804 - 25192850
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||| ||||||| || ||| |||||||||||||    
T  25192804 agagttgtgttatttgaatattcatacatgtgacaacttttgtgaca 25192850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 41189427 - 41189476
Alignment:
Q  129 tagagttgtgttatttgaacattc--atatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||  |||||| ||||||||||| |||||    
T  41189427 tagagttgtgttatttgaacattcatatatatgtgataacttttatgaca 41189476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 33100993 - 33100946
Alignment:
Q  129 tagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  33100993 tagagttgtgttatttgaacattcatatatgtgacaacttttgtgaca 33100946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 174
Target Start/End: Original strand, 44519039 - 44519082
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtga 174  Q
    |||||||||||||||||||||||||||| ||| |||||||||||    
T  44519039 gagttgtgttatttgaacattcatatatgtgacaacttttgtga 44519082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 19055646 - 19055692
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  19055646 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 19055692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 27464944 - 27464990
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  27464944 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 27464990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 31088365 - 31088319
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  31088365 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 31088319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 45121368 - 45121414
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  45121368 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 45121414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 15469945 - 15469989
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||    
T  15469945 gagttgtgttatttgaacattcatatatgtgataa-ttttgtgaca 15469989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 26469542 - 26469497
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  26469542 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 26469497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 48470822 - 48470777
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  48470822 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 48470777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 50726136 - 50726181
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| |||||| ||||||||||    
T  50726136 gagttgtgttatttgaacatccatatatgtgataatttttgtgaca 50726181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 649953 - 649907
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| || |||| ||| |||||||||||||    
T  649953 agagttgtgttatttgaacatccacatatgtgacaacttttgtgaca 649907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 6693328 - 6693294
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataa 165  Q
    |||||||||||||||||||||||||||| ||||||    
T  6693328 gagttgtgttatttgaacattcatatatgtgataa 6693294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 8350087 - 8350132
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||| ||||||    
T  8350087 gagttgtgttatttgaacatccatatatgtgacaactttcgtgaca 8350132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 35369879 - 35369838
Alignment:
Q  135 tgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||| ||||||| ||| |||||||||||||    
T  35369879 tgtgttatttgaacatccatatatgtgacaacttttgtgaca 35369838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 37685512 - 37685467
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||| ||||||||||||||||||| || |||||| ||||||||||    
T  37685512 gagttatgttatttgaacattcatacatgtgataatttttgtgaca 37685467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 37700006 - 37700051
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||| ||||||||||||||||||| || |||||| ||||||||||    
T  37700006 gagttatgttatttgaacattcatacatgtgataatttttgtgaca 37700051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 52576186 - 52576235
Alignment:
Q  128 ttagagttgtgttatttgaac-attcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| |||||||||  ||| |||||||||||||    
T  52576186 ttagagttgtgttatttgaacaattcatataggtgacaacttttgtgaca 52576235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 29359809 - 29359781
Alignment:
Q  130 agagttgtgttatttgaacattcatatat 158  Q
    |||||||||||||||||||||||||||||    
T  29359809 agagttgtgttatttgaacattcatatat 29359781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 30570711 - 30570667
Alignment:
Q  127 tttagagttgtgttatttgaacattcatatatctgataacttttg 171  Q
    |||| ||||||||||||||||||||||| ||| |||||| |||||    
T  30570711 tttaaagttgtgttatttgaacattcatttatatgataatttttg 30570667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 49647035 - 49647079
Alignment:
Q  127 tttagagttgtgttatttgaacattcatatatctgataacttttg 171  Q
    ||||||||| |||||||||||||||||| ||| ||| ||||||||    
T  49647035 tttagagttatgttatttgaacattcatttatatgacaacttttg 49647079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 9647316 - 9647270
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||    
T  9647316 agagttgtgttatttgaacattcatatatgcgataacttttgtgaca 9647270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 9990875 - 9990829
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||    
T  9990875 agagttgtgttatttgaacatccatatatgtgataacttttgtgaca 9990829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 32477516 - 32477470
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  32477516 agagttgtgttatttgaacattcatatatgtgacaacttttgtgaca 32477470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 42421785 - 42421831
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  42421785 agagttgtgttatttgaacattcatatatgtgacaacttttgtgaca 42421831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 41195769 - 41195722
Alignment:
Q  129 tagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||||||||||| | | |||||||||||||    
T  41195769 tagagttgtgttatttgaacattcatatatgtaacaacttttgtgaca 41195722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 18254096 - 18254142
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  18254096 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 18254142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 22888704 - 22888750
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  22888704 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 22888750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 1248870 - 1248826
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtga 174  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||    
T  1248870 agagttgtgttatttgaacatccatatatgtgacaacttttgtga 1248826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 6049236 - 6049278
Alignment:
Q  134 ttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||| ||||||| ||| |||||||||||||    
T  6049236 ttgtgttatttgaacatccatatatgtgacaacttttgtgaca 6049278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 9194425 - 9194379
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||||||| | | || ||||||||||    
T  9194425 agagttgtgttatttgaacattcatatatgtaacaatttttgtgaca 9194379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 9760202 - 9760156
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||  |||||| ||| |||||||||||||    
T  9760202 agagttgtgttatttgaacatctatatatgtgacaacttttgtgaca 9760156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 21611542 - 21611588
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| ||||||| |||||    
T  21611542 agagttgtgttatttgaacatccatatatgtgacaacttttatgaca 21611588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 37737858 - 37737904
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||| | ||||||| ||| |||||||||||||    
T  37737858 agagttgtgttatttgaacgtccatatatgtgacaacttttgtgaca 37737904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 9207772 - 9207728
Alignment:
Q  132 agttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||  |||||| |||||| ||||||||||    
T  9207772 agttgtgttatttgaacatctatatatgtgataatttttgtgaca 9207728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 27490611 - 27490663
Alignment:
Q  124 atgtttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||||||||| ||| |   ||| |||||||||||||    
T  27490611 atgtttagagttgtgttatttgaacatccattttgatgacaacttttgtgaca 27490663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 36670902 - 36670947
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||    
T  36670902 gagttgtgttatttgaacatccatatatgtgataacttttgtgaca 36670947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 37503635 - 37503680
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||    
T  37503635 gagttgtgttatttgaacatttatatatgtgataacttttgtgaca 37503680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 41309302 - 41309255
Alignment:
Q  129 tagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||| |||||||  ||||||||||||||||    
T  41309302 tagagttgtgttatttgaacatccatatatgcgataacttttgtgaca 41309255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 27541389 - 27541435
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  27541389 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 27541435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 33939422 - 33939376
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  33939422 agagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 33939376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 46624091 - 46624045
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| |||| || |||||||||||||||||    
T  46624091 agagttgtgttatttgaacatccatacatgtgataacttttgtgaca 46624045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 13735913 - 13735868
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  13735913 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 13735868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 16969454 - 16969499
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  16969454 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 16969499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 31157564 - 31157609
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgac 175  Q
    ||||||||||||||||||||| ||||||| ||||||||| ||||||    
T  31157564 agagttgtgttatttgaacatccatatatgtgataacttctgtgac 31157609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 32924169 - 32924214
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  32924169 gagttgtgttatttgaacatccatatatgtgacaacttttgtgaca 32924214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 52939838 - 52939789
Alignment:
Q  127 tttagagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||||||| ||||||| ||| |||||| ||||||    
T  52939838 tttagagttgtgttatttgaacatccatatatgtgacaactttcgtgaca 52939789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 35597344 - 35597300
Alignment:
Q  132 agttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||| |||||||||| ||| |||||||||||||    
T  35597344 agttgtgttatttgaatattcatatatgtgacaacttttgtgaca 35597300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 55151603 - 55151646
Alignment:
Q  129 tagagttgtgttatttgaacattcatatatctgataacttttgt 172  Q
    ||||||||||||||||||||||| |||||| ||| |||||||||    
T  55151603 tagagttgtgttatttgaacatttatatatgtgacaacttttgt 55151646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 42358529 - 42358571
Alignment:
Q  134 ttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||| ||||||| ||| |||||||||||||    
T  42358529 ttgtgttatttgaacatccatatatgtgacaacttttgtgaca 42358571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 52326203 - 52326157
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||| ||| ||||||| |||||    
T  52326203 agagttgtgttatttgaacatccatatatatgacaacttttatgaca 52326157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 7934157 - 7934112
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| || ||||||||||    
T  7934157 gagttgtgttatttgaacatccatatatgtgacaatttttgtgaca 7934112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 19149173 - 19149128
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| || ||||||||||    
T  19149173 gagttgtgttatttgaacatccatatatgtgacaatttttgtgaca 19149128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 42356972 - 42357017
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    |||||||||||||||||||| ||||||| ||| || ||||||||||    
T  42356972 gagttgtgttatttgaacatccatatatgtgacaatttttgtgaca 42357017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 42478143 - 42478095
Alignment:
Q  130 agagttgtgttatttgaacattc--atatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| |  |||||| |||||||||||||||||    
T  42478143 agagttgtgttatttgaacatccatatatatatgataacttttgtgaca 42478095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 44413283 - 44413328
Alignment:
Q  131 gagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||  |||||| ||| |||||||||||||    
T  44413283 gagttgtgttatttgaacatctatatatgtgacaacttttgtgaca 44413328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 8852 - 8806
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  8852 agagttgtgttatttgaacatccatatatctgacaacttttatgaca 8806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 76506 - 76552
Alignment:
Q  130 agagttgtgttatttgaacattcatatatctgataacttttgtgaca 176  Q
    ||||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  76506 agagttgtgttattttaacatccatatatgtgacaacttttgtgaca 76552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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