View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_high_132 (Length: 230)
Name: NF0154_2D_high_132
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_high_132 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 11835302 - 11835085
Alignment:
| Q |
1 |
gttgatataaaaaatgaagttgcttatatccaagctggtgctacacttggtgaagtttactacagaatttctgaaaagagtaaagttcatggatttcctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11835302 |
gttgatataaaaaatgaagttgcttatattcaagctggtgctacacttggtgaagtttactacagaatttctgaaaagagtaaagttcatggatttcctg |
11835203 |
T |
|
| Q |
101 |
ctggtgtgtgtccaactgtcggtgttggtggtcacgtcagtggtggagggtatggtgcaatgttgagaaaatatggtttatccgttgataatattattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11835202 |
ctggtgtgtgtccaactgtcggtgttggtggtcacgtcagtggtggagggtatggtgcaatgttgagaaaatatggtttatctgttgataatattattga |
11835103 |
T |
|
| Q |
201 |
tgctgaaatttttgatgt |
218 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
11835102 |
tgctgaaattgttgatgt |
11835085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 11821062 - 11821279
Alignment:
| Q |
1 |
gttgatataaaaaatgaagttgcttatatccaagctggtgctacacttggtgaagtttactacagaatttctgaaaagagtaaagttcatggatttcctg |
100 |
Q |
| |
|
||||||||||| || ||||||||||| | |||| |||||||||||||||||||||||| || ||||||| ||| |||||||| |||||||| ||||||| |
|
|
| T |
11821062 |
gttgatataaagaacgaagttgcttacgttcaaggtggtgctacacttggtgaagtttattatagaatttatgagaagagtaaggttcatggttttcctg |
11821161 |
T |
|
| Q |
101 |
ctggtgtgtgtccaactgtcggtgttggtggtcacgtcagtggtggagggtatggtgcaatgttgagaaaatatggtttatccgttgataatattattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
11821162 |
ctggtgtgtgtccaactgtcggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattga |
11821261 |
T |
|
| Q |
201 |
tgctgaaatttttgatgt |
218 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
11821262 |
tgctgaaattgttgatgt |
11821279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 203
Target Start/End: Original strand, 11933638 - 11933792
Alignment:
| Q |
49 |
ggtgaagtttactacagaatttctgaaaagagtaaagttcatggatttcctgctggtgtgtgtccaactgtcggtgttggtggtcacgtcagtggtggag |
148 |
Q |
| |
|
|||||| ||||||| |||||| |||||| |||||||||||||| ||||| || || || ||||| || || |||||||| || || | |||||||| | |
|
|
| T |
11933638 |
ggtgaactttactatagaattaatgaaaaaagtaaagttcatggttttccggccggcgtttgtcctaccgttggtgttggaggacatttaagtggtggtg |
11933737 |
T |
|
| Q |
149 |
ggtatggtgcaatgttgagaaaatatggtttatccgttgataatattattgatgc |
203 |
Q |
| |
|
| |||||| ||| |||||||||||||| | || |||||||||||||| ||||| |
|
|
| T |
11933738 |
gatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgc |
11933792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 203
Target Start/End: Original strand, 11946859 - 11947013
Alignment:
| Q |
49 |
ggtgaagtttactacagaatttctgaaaagagtaaagttcatggatttcctgctggtgtgtgtccaactgtcggtgttggtggtcacgtcagtggtggag |
148 |
Q |
| |
|
|||||| ||||||| |||||| |||||| |||||||||||||| ||||| || || || ||||| || || |||||||| || || | |||||||| | |
|
|
| T |
11946859 |
ggtgaactttactatagaattaatgaaaaaagtaaagttcatggttttccggccggcgtttgtcctaccgttggtgttggaggacatttaagtggtggtg |
11946958 |
T |
|
| Q |
149 |
ggtatggtgcaatgttgagaaaatatggtttatccgttgataatattattgatgc |
203 |
Q |
| |
|
| |||||| ||| |||||||||||||| | || |||||||||||||| ||||| |
|
|
| T |
11946959 |
gatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgc |
11947013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 11917454 - 11917563
Alignment:
| Q |
36 |
tggtgctacacttggtgaagtttactacagaatttctgaaaagagtaaagttcatggatttcctgctggtgtgtgtccaactgtcggtgttggtggtcac |
135 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||| |||| || |||||| ||||| ||| | || || || ||||| ||||| |||||||| || || |
|
|
| T |
11917454 |
tggtgcaacacttggtgaagtttactatagaattgctgagaaaagtaaaactcatgcttttgcggccggcgtttgtccgactgttggtgttggaggacat |
11917553 |
T |
|
| Q |
136 |
gtcagtggtg |
145 |
Q |
| |
|
|| ||||||| |
|
|
| T |
11917554 |
gttagtggtg |
11917563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 38125411 - 38125594
Alignment:
| Q |
35 |
ctggtgctacacttggtgaagtttactacagaatttctgaaaagagtaaagttcatggatttcctgctggtgtgtgtccaactgtcggtgttggtggtca |
134 |
Q |
| |
|
||||||||| ||||||||| ||||| || || || | || ||||||||||||||||| ||||||||||| || ||| ||||| |||||||||||||| |
|
|
| T |
38125411 |
ctggtgctatacttggtgaggtttattataggatatgggagaagagtaaagttcatggctttcctgctggggtttgtattactgttggtgttggtggtca |
38125510 |
T |
|
| Q |
135 |
cgtcagtggtggagggtatggtgcaatgttgagaaaatatggtttatccgttgataatattattgatgctgaaatttttgatgt |
218 |
Q |
| |
|
| | |||||||||||||||||| ||| ||||||||| ||| || || |||||||| || |||||||||||||| ||||||| |
|
|
| T |
38125511 |
cttgagtggtggagggtatggtaacatgatgagaaaatttgggttgtctattgataatgttgttgatgctgaaattgttgatgt |
38125594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 218
Target Start/End: Original strand, 38090579 - 38090760
Alignment:
| Q |
37 |
ggtgctacacttggtgaagtttactacagaatttctgaaaagagtaaagttcatggatttcctgctggtgtgtgtccaactgtcggtgttggtggtcacg |
136 |
Q |
| |
|
||||||||| ||||||||||||| || || |||||||| | |||| |||||||| ||||| ||||| || ||||| ||||| ||||||||||| || |
|
|
| T |
38090579 |
ggtgctacaattggtgaagtttattataggatttctgagattagtagtgttcatggttttccagctggggtttgtcctactgttggtgttggtggacatt |
38090678 |
T |
|
| Q |
137 |
tcagtggtggagggtatggtgcaatgttgagaaaatatggtttatccgttgataatattattgatgctgaaatttttgatgt |
218 |
Q |
| |
|
| |||||||| ||||||||| ||| ||||||||| ||| ||||| |||||||||||| | |||||| | ||| ||||||| |
|
|
| T |
38090679 |
ttagtggtggggggtatggtaacatgatgagaaaatttgggttatctgttgataatattttggatgctaagattgttgatgt |
38090760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 38129408 - 38129548
Alignment:
| Q |
79 |
agtaaagttcatggatttcctgctggtgtgtgtccaactgtcggtgttggtggtcacgtcagtggtggagggtatggtgcaatgttgagaaaatatggtt |
178 |
Q |
| |
|
|||||||||||||| |||||||| || || ||||||||||| ||||||||||| || | ||||| |||||||||||| ||| ||||||||| || | |
|
|
| T |
38129408 |
agtaaagttcatggctttcctgccggcgtttgtccaactgttggtgttggtggccatttgagtggaggagggtatggtaacatgatgagaaaattcgggt |
38129507 |
T |
|
| Q |
179 |
tatccgttgataatattattgatgctgaaatttttgatgtc |
219 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
38129508 |
tatctattgataatattgttgatgctaaaattattgatgtc |
38129548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 155
Target Start/End: Original strand, 38072671 - 38072791
Alignment:
| Q |
35 |
ctggtgctacacttggtgaagtttactacagaatttctgaaaagagtaaagttcatggatttcctgctggtgtgtgtccaactgtcggtgttggtggtca |
134 |
Q |
| |
|
||||||| || ||||||||| ||||||||| |||| | |||| || ||| || ||| || |||| ||||| ||||| ||||| ||||||||||| || |
|
|
| T |
38072671 |
ctggtgcaacccttggtgaactttactacaaaattgcccaaaaaagcaaaactcttggtttccctggaggtgtttgtcctactgtaggtgttggtggaca |
38072770 |
T |
|
| Q |
135 |
cgtcagtggtggagggtatgg |
155 |
Q |
| |
|
| |||||||||| || ||||| |
|
|
| T |
38072771 |
cttcagtggtggtggctatgg |
38072791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1893 times since January 2019
Visitors: 2200