View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0154_2D_high_14 (Length: 714)
Name: NF0154_2D_high_14
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0154_2D_high_14
Alignment Details
Target: chr2 (Bit Score: 556; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 15 - 639
Target Start/End: Original strand, 4643719 - 4644344
Alignment:
Q
15
agatgaagaggagtatgatcaagctggatgtttgaaatggttaaacaagttttttgaataccataatgagctgcttcaaaccgaactacataagcttcga
114
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
4643719
agatgaagaggagtatgatcaagctggatgtttgaaatggttaaacaagttttttgaataccataatgagctgcttcaaaccgaactacataagcttcga
4643818
T
Q
115
gtgctgtatccttttactaatatcatctatgcagattatttcaatgctgcattgcagttgtacaaatccccagaacaatatggtagtctgcttgctaatc
214
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
T
4643819
gtgctgtatccttttactaatatcatctatgcagattatttcaatgctgcattgcagttgtacaaatctccagaacaatatggtagtctgcttgctaatc
4643918
T
Q
215
ct-tttactttttatgtcatatcaatgtatttgtgctgcaagtaagcattacaagttgcaacataaaagttcagtcatatagaactgttcatggttcagg
313
Q
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
T
4643919
ctctttactttttatgtcatatcaatgtgtttgtgctgcaagtaagcattacaagttgcaacataaaagttcagtcatatagaactgttcagggttcagg
4644018
T
Q
314
aaggataccaaactgaatagttaaaacaatttggtaaaacgtaatcgaactgttcatagtcacctttnnnnnnncaaactatactttttcgacatttttt
413
Q
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
T
4644019
aaggataccaaactgaatagttaaaacaatttggtaaaacgtaaccgaactgttcatagtcacctttaaaaaaacaaactatactttttcgacatttttt
4644118
T
Q
414
gcagacctcattgtaacaaatttttattattaactgataattaggaatgttgaaaaaagcccaaaatcgaaccaaattgaatagtatgactgtttnnnnn
513
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
T
4644119
gcagacctcattgtaacaaatttttattattaactgataattaggaatgttgagaaaagcccaaaatcgaaccaaattgaatagtatgactgtttaaaaa
4644218
T
Q
514
nnctgaagaactgttaaattgaacaaaacagagctgcaccggaaagaaccaaacaatcaaggataattcgtgaactcaactgaaccgaactcggttcagt
613
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
4644219
aactgaagaactgttaaattgaacaaaacagagctgcaccggaaagaaccaaacaatcaaggataattcgtgaactcaactgaaccgaactcggttcagt
4644318
T
Q
614
tcctgaattgtcaatcattgtttgac
639
Q
||||||||||||||||||||||||||
T
4644319
tcctgaattgtcaatcattgtttgac
4644344
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 4661604 - 4661784
Alignment:
Q
15
agatgaagaggagtatgatcaagctggatgtttgaaatggttaaacaagttttttgaataccataatgagctgcttcaaaccgaactacataagcttcga
114
Q
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||
T
4661604
agatgaagatgagtatgatcaagctggatgtttgacatggttaaacaagttttttgaatatcataatgagctgcttcaaatcgaactaaataggcttcga
4661703
T
Q
115
gtgctgtatccttttactaatatcatctatgcagat--tatttca--atgctgcattgcagttgtacaaatccccagaaca
191
Q
|| |||||| |||| |||||||||||||||||||| ||||||| ||||||||||||||| |||||||| ||||||||
T
4661704
gtcttgtatcattttgctaatatcatctatgcagattatatttcaatatgctgcattgcagtgttacaaatctccagaaca
4661784
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 472
Target Start/End: Original strand, 7426013 - 7426046
Alignment:
Q
439
attattaactgataattaggaatgttgaaaaaag
472
Q
||||||||||||||||||||| ||||||||||||
T
7426013
attattaactgataattaggactgttgaaaaaag
7426046
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 508
Target Start/End: Original strand, 51215749 - 51215834
Alignment:
Q
423
attgtaacaaatttttattattaactgataattaggaatgttgaaaaaagcccaaaatcgaaccaaattgaatagtatgactgttt
508
Q
|||||| |||||| ||||||||| ||||||||||| ||||||| ||| || |||| ||||||||||||| |||||||||||
T
51215749
attgtaccaaattgctattattaattgataattagggctgttgaagaaaaccaaaaacgaaaccaaattgaattttatgactgttt
51215834
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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