View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_high_145 (Length: 216)
Name: NF0154_2D_high_145
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_high_145 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 33351806 - 33351945
Alignment:
| Q |
19 |
atcaaaccggtgtgcttgaaaggtcgtctgtttggagaagtcaaccccttaaatagatattggtaatgggatcaacccaacaaaacnnnnnnntatttgt |
118 |
Q |
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| T |
33351806 |
atcaaaccggtgtgcttgaaaggtcgtctgtttggagaagtcaaccccttaaatagatattggtaacgggatcaacccaacaaaacaaaaaaatatttgt |
33351905 |
T |
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| Q |
119 |
tatgttttaattgattgaaggaaataattgaatggtgtga |
158 |
Q |
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| T |
33351906 |
tatgttttaattgattgaaggaaataattgaatggtgtga |
33351945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 33351988 - 33351940
Alignment:
| Q |
168 |
atcctatctcaaaaaattaacactagtatagtatccttccatttcacac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33351988 |
atcctatctcaaaaaattaacactagtatagtatccttccatttcacac |
33351940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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