View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0154_2D_high_146 (Length: 216)
Name: NF0154_2D_high_146
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0154_2D_high_146
Alignment Details
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 27004703 - 27004783
Alignment:
Q
20
cttccccgtcttagggttgcaaactcttctcaaaaagactactactaaatccaccttgacctctctcacatgttccaatat
100
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
27004703
cttccccgtcttagggttgcaaactcttctcaaaaagactactactaaatccaccttgacctctctcacatgttccaatat
27004783
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 27005526 - 27005447
Alignment:
Q
92
ttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaagaaggctgagttggtg
171
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
27005526
ttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaagaaggctgagttggtg
27005447
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 33708776 - 33708698
Alignment:
Q
93
tccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaagaaggctgagttggtg
171
Q
|||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
T
33708776
tccaatatttgttgactccattctgatctcagtgagcaaaggacagttcctaaggagtgcaaagaaggctgaattggtg
33708698
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 33714611 - 33714533
Alignment:
Q
93
tccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaagaaggctgagttggtg
171
Q
|||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
T
33714611
tccaatatttgttgactccattctgatctcagtgagcaaaggacagttcctaaggagtgcaaagaaggctgaattggtg
33714533
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 27005406 - 27005462
Alignment:
Q
160
gctgagttggtgtctataaacctcagcggttgtcaccagctcaccaactcagccttc
216
Q
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
T
27005406
gctgatttggtgtctataaacctcagcggttgtcaccagctcaccaactcagccttc
27005462
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 36810776 - 36810708
Alignment:
Q
92
ttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaagaagg
160
Q
|||| |||| || |||||||||||||||||| | ||||||| || ||||||||||||||||||||||||
T
36810776
ttcctatatttgttgactccattctgatctcagcgagcaaatgaaagttcctaaggagtgcaaagaagg
36810708
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 37580580 - 37580511
Alignment:
Q
92
ttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaagaaggc
161
Q
||||||| ||| |||||||||| ||||||| ||||| |||||||||||| ||||||||||||| |||||
T
37580580
ttccaattcctgttgactccattttgatctcagtgagtaaaggacagttcttaaggagtgcaaacaaggc
37580511
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 36810656 - 36810700
Alignment:
Q
160
gctgagttggtgtctataaacctcagcggttgtcaccagctcacc
204
Q
||||| ||||||||||||||| ||||||||||| |||||||||||
T
36810656
gctgatttggtgtctataaacgtcagcggttgttaccagctcacc
36810700
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 37579765 - 37579845
Alignment:
Q
20
cttccccgtcttagggttgcaaactcttctcaaaaagactactactaaatccaccttgacctctctcacatgttccaatat
100
Q
||||||||| ||||||||||| ||| |||||||||| || |||| ||| |||||||||||||| || ||||| |||||
T
37579765
cttccccgtattagggttgcagactattctcaaaaacaccactatatcatcaaccttgacctctctgacttgttcaaatat
37579845
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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