View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_high_165 (Length: 202)
Name: NF0154_2D_high_165
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_high_165 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 42215693 - 42215864
Alignment:
| Q |
18 |
ctctcccacaacaagctctcagggaatttagatgctctttctaaccttcataatcttgtttctttaaatgtttccttcaatgaattctctggtgaattgc |
117 |
Q |
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| T |
42215693 |
ctctcccacaacaagctctcagggaatttagatgctatttctaaccttcataatcttgtttctttaaatgtttccttcaatgaattctctggtgaattgc |
42215792 |
T |
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| Q |
118 |
ctaactcaccattctttaggaaactccctttcagtgatctcactggaaataaaggtcttcacattcctgatg |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42215793 |
ctaactcaccattctttaggaaactccctttcagtgatctcactggaaataaaggtcttcacattcctgatg |
42215864 |
T |
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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 24157471 - 24157635
Alignment:
| Q |
18 |
ctctcccacaacaagctctcagggaatttagatgctctttctaaccttcataatcttgtttctttaaatgtttccttcaatgaattctctggtgaattgc |
117 |
Q |
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||||| || ||||| |||||||||||||||||| |||| ||| ||||||| ||||||||||| ||||||||||||||||||| ||||||||| | || | |
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| T |
24157471 |
ctctcacataacaaactctcagggaatttagatcctctatctgaccttcaaaatcttgtttccttaaatgtttccttcaatgccttctctggtaagttac |
24157570 |
T |
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| Q |
118 |
ctaactcaccattctttaggaaactccctttcagtgatctcactggaaataaaggtcttcacatt |
182 |
Q |
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||||| |||||||||| || |||||| |||||||||| | | |||| |||||||| ||||| |
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| T |
24157571 |
ctaacacaccattcttccataatctccctctcagtgatcttgccgaaaatgaaggtctttacatt |
24157635 |
T |
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