View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_high_2 (Length: 1235)

Name: NF0154_2D_high_2
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_high_2
NF0154_2D_high_2
[»] chr2 (8 HSPs)
chr2 (219-1002)||(39064472-39065254)
chr2 (1051-1223)||(39065300-39065472)
chr2 (20-152)||(39064273-39064405)
chr2 (20-151)||(34172817-34172945)
chr2 (313-399)||(39063803-39063889)
chr2 (316-390)||(34172430-34172504)
chr2 (313-390)||(34173844-34173921)
chr2 (361-390)||(35029894-35029923)
[»] scaffold0330 (5 HSPs)
scaffold0330 (20-151)||(12733-12864)
scaffold0330 (318-390)||(13231-13303)
scaffold0330 (313-390)||(12524-12601)
scaffold0330 (225-291)||(12592-12658)
scaffold0330 (226-284)||(13171-13228)
[»] chr4 (4 HSPs)
chr4 (316-390)||(31414835-31414909)
chr4 (231-283)||(31414781-31414833)
chr4 (328-390)||(39310403-39310465)
chr4 (361-390)||(32159554-32159583)
[»] chr3 (3 HSPs)
chr3 (318-388)||(37886663-37886733)
chr3 (225-284)||(37886736-37886794)
chr3 (313-390)||(55444565-55444642)
[»] chr8 (3 HSPs)
chr8 (324-390)||(6461887-6461953)
chr8 (343-390)||(34587347-34587394)
chr8 (726-768)||(3938328-3938370)
[»] chr5 (1 HSPs)
chr5 (316-364)||(19778749-19778797)


Alignment Details
Target: chr2 (Bit Score: 624; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 219 - 1002
Target Start/End: Original strand, 39064472 - 39065254
Alignment:
Q  219 ggaaaaggtgtattttatttttcattaaaaaagtgctcttgccaaagctcttaatcacaacccttgtatttactccttcnnnnnnnnnnnnn-------c 311  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||                    |    
T  39064472 ggaaaaggtgtattttatttttcattaaaaaagtgctcatgccaaagctcttaatcacaacccttgtttttactccttcagaaaaaaagaaaaaaaaacc 39064571  T
Q  312 tttgtttttacatttgccacatgtcatacatcaataaaatgaaaatgaataaattgaggaaacctaaatggagcaaagacggattcacatttagtatgtg 411  Q
     ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  39064572 cttgtttttacatttgccacatgtcacacatcaataaaatgaaaaggaataaattgaggaaacataaatggagcaaagacgtatttacatttagtatgtg 39064671  T
Q  412 tttggtttattgttcacactaagactcacgtttacacattttccaatgcattttttcaacgcaaaatccaaacttttgaaaatggagtttcatgttttca 511  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39064672 tttggtttattgttcacactaagactcacgtttacacattt-ccaatgcattttttcaacgcaaaatccaaacttttgaaaatggagtttcatgttttca 39064770  T
Q  512 caagtttgaaggctttggccgcatacccaaatagacaattacaatgtcaagtttctaagaccgtcttgatcaattaacaatgtcaataactcgatattgt 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39064771 caagtttgaaggctttggccgcatacccaaatagacaattacaatgttaagtttctaagaccgtcttgatcaattaacaatgtcaataactcgatattgt 39064870  T
Q  612 tagttctgacgtcttcactaagttagaatatgagatctcacaattatgcgtgtgaattttatgtagtgtatatccgttcgtctatcgtaaaaaacaaata 711  Q
    ||||||| |||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||||||||       |||||||||||||||||||    
T  39064871 tagttctcacgtcttcactaagtttgaatatgagatctcacatttatacgtgtgaattttatgtaatgtatatc-------ctatcgtaaaaaacaaata 39064963  T
Q  712 ttttctctaatccatgatgtatttgattcataacaaagatcaaatacatcaacttttttaacccatatcccttataaaaattatccaagggagtagttaa 811  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39064964 ttttctctaatccatgatgtatttgattcataacaaagatcaaatacatcaacttttttaacccatatcccttataaaaattatccaagggagtagttaa 39065063  T
Q  812 ctactttcatgaaggtccaaaataaaggaaccaataaactagatcacaatagtaatattgcacctagtttgattaaaacaaatacgattaatcagagatt 911  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39065064 ctactttcatgaaggtccaaaataaaggaaccaataaactagatcacaatagtaatattgcacctagtttgattaaaacaaatacgattaatcagagatt 39065163  T
Q  912 ccatctgctactttactaacttcatatattagcaagagcaagtcaacataaatcccaattatcgggatcatgattcttggtttccctcacc 1002  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39065164 ccatctgctcctttattaacttcatatattagcaagagcaagtcaacataaatgccaattatcgggatcatgattcttggtttccctcacc 39065254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 1051 - 1223
Target Start/End: Original strand, 39065300 - 39065472
Alignment:
Q  1051 gatcaggtaacatatgctaagctcacatcacatggactcatggagcaactacctaacctgcccatattatatatctaggagtcattatattacgttaaac 1150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39065300 gatcaggtaacatatgctaagctcacatcacatggactcatggagcaactacctaacctgcccatattatatatctaggagtcattatattacgttaaac 39065399  T
Q  1151 cacgttaccaaacaccaaatcctttctaaaaaataagtttaataatatatgattattgaaattcaacaccaaa 1223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39065400 cacgttaccaaacaccaaatcctttctaaaaaataagtttaataatatatgattattgaaattcaacaccaaa 39065472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 39064273 - 39064405
Alignment:
Q  20 gtgtgaggctgtatgtggagaacgaggagatcaccgcgacggagggtgatgaacggcggtggaggcggcgccgatgacagggaaacacaaccatgatggt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39064273 gtgtgaggctgtatgtggagaacgaggagatcaccgcgacggagggtgatgaacggcggtggaggcggcgccgatgacagggaaacacaaacatgatggt 39064372  T
Q  120 gagaggaagaaggaggaggagtgttgtacgttc 152  Q
    ||||||||||||||||||||||| || ||||||    
T  39064373 gagaggaagaaggaggaggagtgctgcacgttc 39064405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 34172817 - 34172945
Alignment:
Q  20 gtgtgaggctgtatgtggagaacgaggagatcaccgcgacggagggtgatgaacggcggtggaggcggcgccgatgacagggaaacacaaccatgatggt 119  Q
    ||||||||||||||||| |||| | ||||||| ||||  |||||||||||||||||||| ||   |||| ||||||||||||| ||||||||||||||||    
T  34172817 gtgtgaggctgtatgtgaagaagggggagatcgccgcagcggagggtgatgaacggcggcgg---cggctccgatgacagggagacacaaccatgatggt 34172913  T
Q  120 gagaggaagaaggaggaggagtgttgtacgtt 151  Q
    ||||||||||||||||||||||||||||||||    
T  34172914 gagaggaagaaggaggaggagtgttgtacgtt 34172945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 313 - 399
Target Start/End: Complemental strand, 39063889 - 39063803
Alignment:
Q  313 ttgtttttacatttgccacatgtcatacatcaataaaatgaaaatgaataaattgaggaaacctaaatggagcaaagacggattcac 399  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  39063889 ttgtttttacatttgccacatgtcatacatcaataaagtgaaaatgaataaattgaggaaacctaaatggagcaaagatggactcac 39063803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 316 - 390
Target Start/End: Complemental strand, 34172504 - 34172430
Alignment:
Q  316 tttttacatttgccacatgtcatacatcaataaaatgaaaatgaataaattgaggaaacctaaatggagcaaaga 390  Q
    |||||||||||| ||||||||| |||||||||||||||||| |||||||||||| |||||||||||||| |||||    
T  34172504 tttttacatttgtcacatgtcacacatcaataaaatgaaaaggaataaattgagaaaacctaaatggagaaaaga 34172430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 313 - 390
Target Start/End: Original strand, 34173844 - 34173921
Alignment:
Q  313 ttgtttttacatttgccacatgtcatacatcaataaaatgaaaatgaataaattgaggaaacctaaatggagcaaaga 390  Q
    ||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| ||||| ||| ||||||||||    
T  34173844 ttgtttttacatttgtcacatgtcacacatcaataaaatgaaaaggaataaattgagaaaaccaaaagggagcaaaga 34173921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 361 - 390
Target Start/End: Original strand, 35029894 - 35029923
Alignment:
Q  361 taaattgaggaaacctaaatggagcaaaga 390  Q
    ||||||||||||||||||||||||||||||    
T  35029894 taaattgaggaaacctaaatggagcaaaga 35029923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 84; Significance: 3e-39; HSPs: 5)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 12864 - 12733
Alignment:
Q  20 gtgtgaggctgtatgtggagaacgaggagatcaccgcgacggagggtgatgaacggcggtggaggcggcgccgatgacagggaaacacaaccatgatggt 119  Q
    |||||||||||||||||||||| ||||||||| | ||  |||||||||||||||||||||||||||||| ||| | ||||||| || |||||||||||||    
T  12864 gtgtgaggctgtatgtggagaaggaggagatcgctgcagcggagggtgatgaacggcggtggaggcggcaccggtcacagggagacgcaaccatgatggt 12765  T
Q  120 gagaggaagaaggaggaggagtgttgtacgtt 151  Q
    ||||||||| ||||||| ||||||||||||||    
T  12764 gagaggaaggaggaggaagagtgttgtacgtt 12733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 13231 - 13303
Alignment:
Q  318 tttacatttgccacatgtcatacatcaataaaatgaaaatgaataaattgaggaaacctaaatggagcaaaga 390  Q
    |||| ||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  13231 tttaaatttgccacatgtcacacatcaataaagtgaaaaggaataaattgaggaaacctaaatggagcaaaga 13303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 313 - 390
Target Start/End: Complemental strand, 12601 - 12524
Alignment:
Q  313 ttgtttttacatttgccacatgtcatacatcaataaaatgaaaatgaataaattgaggaaacctaaatggagcaaaga 390  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||| ||||| |||||||||    
T  12601 ttgtttttacatttgccacatgtcacacaacaataaagtgaaaaggaataaattgaggaaacttaaatagagcaaaga 12524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 12658 - 12592
Alignment:
Q  225 ggtgtattttatttttcattaaaaaagtgctcttgccaaagctcttaatcacaacccttgtatttac 291  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||| |||||    
T  12658 ggtgtattttatttttcattaaaaaagtgctcatgccaaagcttttaatcccaacccttgtttttac 12592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330; HSP #5
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 13171 - 13228
Alignment:
Q  226 gtgtattttatttttcattaaaaaagtgctcttgccaaagctcttaatcacaacccttg 284  Q
    ||||||||||||||||||| ||||||||||  |||||||||| |||||| |||||||||    
T  13171 gtgtattttatttttcatt-aaaaagtgctaatgccaaagcttttaatcccaacccttg 13228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 5e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 316 - 390
Target Start/End: Original strand, 31414835 - 31414909
Alignment:
Q  316 tttttacatttgccacatgtcatacatcaataaaatgaaaatgaataaattgaggaaacctaaatggagcaaaga 390  Q
    |||||||||||||||||||||| | ||||||||| |||||| ||||||||||||||||| |||||||||||||||    
T  31414835 tttttacatttgccacatgtcacatatcaataaagtgaaaaggaataaattgaggaaacttaaatggagcaaaga 31414909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 31414781 - 31414833
Alignment:
Q  231 ttttatttttcattaaaaaagtgctcttgccaaagctcttaatcacaaccctt 283  Q
    ||||| |||||||| ||||||||||| |||||||||| |||||| ||||||||    
T  31414781 ttttacttttcattgaaaaagtgctcatgccaaagcttttaatctcaaccctt 31414833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 390
Target Start/End: Complemental strand, 39310465 - 39310403
Alignment:
Q  328 ccacatgtcatacatcaataaaatgaaaatgaataaattgaggaaacctaaatggagcaaaga 390  Q
    |||||||||||||||| ||||  |||||  | ||||||||||||| | |||||||||||||||    
T  39310465 ccacatgtcatacatctataacttgaaatgggataaattgaggaatcttaaatggagcaaaga 39310403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 361 - 390
Target Start/End: Original strand, 32159554 - 32159583
Alignment:
Q  361 taaattgaggaaacctaaatggagcaaaga 390  Q
    ||||||||||||||||||||||||||||||    
T  32159554 taaattgaggaaacctaaatggagcaaaga 32159583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 5e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 37886733 - 37886663
Alignment:
Q  318 tttacatttgccacatgtcatacatcaataaaatgaaaatgaataaattgaggaaacctaaatggagcaaa 388  Q
    |||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||||||    
T  37886733 tttacatttgccacatgtcacacatcaataaagtgaaaaggaataaattgaggaaacctaaatgaagcaaa 37886663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 37886794 - 37886736
Alignment:
Q  225 ggtgtattttatttttcattaaaaaagtgctcttgccaaagctcttaatcacaacccttg 284  Q
    ||||||||||||||||||||||||| |||||| |||||||||| |||||| |||||||||    
T  37886794 ggtgtattttatttttcattaaaaa-gtgctcatgccaaagcttttaatcccaacccttg 37886736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 313 - 390
Target Start/End: Original strand, 55444565 - 55444642
Alignment:
Q  313 ttgtttttacatttgccacatgtcatacatcaataaaatgaaaatgaataaattgaggaaacctaaatggagcaaaga 390  Q
    ||||||||||||||||||||||||| ||||||||||| |||||| | |||||| ||| |  | |||||| ||||||||    
T  55444565 ttgtttttacatttgccacatgtcacacatcaataaagtgaaaagggataaatggagcattcttaaatgaagcaaaga 55444642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 324 - 390
Target Start/End: Complemental strand, 6461953 - 6461887
Alignment:
Q  324 tttgccacatgtcatacatcaataaaatgaaaatgaataaattgaggaaacctaaatggagcaaaga 390  Q
    |||||||||||||||||||| ||||  |||||   ||||||||||| ||||| ||||||||||||||    
T  6461953 tttgccacatgtcatacatctataacttgaaatgaaataaattgagcaaaccgaaatggagcaaaga 6461887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 34587347 - 34587394
Alignment:
Q  343 caataaaatgaaaatgaataaattgaggaaacctaaatggagcaaaga 390  Q
    ||||||||||| || || |||||||||||||| |||||||||||||||    
T  34587347 caataaaatgagaaggagtaaattgaggaaacttaaatggagcaaaga 34587394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 726 - 768
Target Start/End: Complemental strand, 3938370 - 3938328
Alignment:
Q  726 tgatgtatttgattcataacaaagatcaaatacatcaactttt 768  Q
    ||||||||||| ||||||| ||||| |||||||||||||||||    
T  3938370 tgatgtatttggttcataataaagaccaaatacatcaactttt 3938328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 19778749 - 19778797
Alignment:
Q  316 tttttacatttgccacatgtcatacatcaataaaatgaaaatgaataaa 364  Q
    |||||||||||||||||||||| ||||||||||| | |||| |||||||    
T  19778749 tttttacatttgccacatgtcaaacatcaataaagtaaaaaggaataaa 19778797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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