View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_high_29 (Length: 528)
Name: NF0154_2D_high_29
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Original strand, 11791161 - 11791668
Alignment:
| Q |
1 |
cccttgccataccaagtgcaattctatacctcatgttccaatccaaaacaggtttatctgagatacttggatccggtaggctagtatcatgacttagatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11791161 |
cccttgccataccaagtgcaattctatacctcatgttccaatccaaaacaggtttatctgagatacttggatctggtaggctagtatcatgacttagatc |
11791260 |
T |
|
| Q |
101 |
agattctgattcaccagtaccactaccctttttagacttgaccctgaagaggtacttgtccaatgatccacccgggatgtattcataaacaagtattctt |
200 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11791261 |
agattctgactcaccagtaccactactctttttagacttgaccctgaagaggtacttgtccaatgatccacccgggatgtattcataaacaagtattctt |
11791360 |
T |
|
| Q |
201 |
tgacctttctcggcgcagaaaccccacaatcgaaccaagttaagatgatgcatcctcgcaatgattgtaacttccgcccagaactcagcgtcacctccag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11791361 |
tgacctttctcggcgcagaaaccccacaatcgaaccaagttaagatgatgcatcctcgcaatgattgtaacttccgcccagaactcagcgtcacctccag |
11791460 |
T |
|
| Q |
301 |
taacattctttaagcacttcaccgcaacaacacggtgatctggcaactcgcctttataaacatctccaaatccacccttcccgatgagattcgagaaatc |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11791461 |
taacattctttaagcacttcaccgcaacaacacggtgatctggcaactcgcctttataaacatctccaaatccacccttcccaatgagattcgagaaatc |
11791560 |
T |
|
| Q |
401 |
attagtagcagctttgatctccgagtaggtaaaccttttcggaccacctgcaggtaaaagctcaagacctaatgtggtagccatgtccctatacttgata |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11791561 |
attagtagcagctttgatctccgagtaggtaaaccttttcggaccacctgcaggtaaaagctcaagacctaatgtggtagccatgtccctatacttgata |
11791660 |
T |
|
| Q |
501 |
tacctctt |
508 |
Q |
| |
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|||||||| |
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|
| T |
11791661 |
tacctctt |
11791668 |
T |
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