View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_high_31 (Length: 515)
Name: NF0154_2D_high_31
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 21 - 500
Target Start/End: Complemental strand, 40623872 - 40623393
Alignment:
| Q |
21 |
taggtacaataaacaaatgcattaattaagaggnnnnnnnnctcattagcacactaaagtgaaacacaaaaagcttatggataagaaaaaagaacctgct |
120 |
Q |
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| T |
40623872 |
taggtacaataaacaaatgcattaattaagaggaaaaaaaactcattagcacactaaagtgaaacacaaaaagcttatggataagaaaaaagaacctgct |
40623773 |
T |
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| Q |
121 |
acattgctggcagaacctttgcttatgtccaccaattgtgacctgtgcagtcttggaatgaagttcacagaccttatgacgcctatgatagtctctacag |
220 |
Q |
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| T |
40623772 |
acattgctggcagaacctttgcttatgtccaccaattgtgacctgtgcagtcttggaatgaagttcacagaccttatgacgcctatgatagtctctacag |
40623673 |
T |
|
| Q |
221 |
ttactaagatcagcttgacaaccatccacaagacatgaaactatctgagtcccattgttaatagctctagctctcttagatgaccctgaagttgatgatg |
320 |
Q |
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| T |
40623672 |
ttactaagatcagcttgacaaccatccacaagacatgaaactatctgagtcccattgttaatagctctagctctcttagatgaccctgaagttgatgatg |
40623573 |
T |
|
| Q |
321 |
atgaagatgtcattttggtaaatccaccaacatctttggactttgttagccctgattcagtgctagaatttccaacatggccaagcttcaaatcaacaga |
420 |
Q |
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| T |
40623572 |
atgaagatgtcattttggtaaatccaccaacatctttggactttgttagccctgattcagtgctagaatttccaacatggccaagcttcaaatcaacaga |
40623473 |
T |
|
| Q |
421 |
aaaatctccttttgttctgtaatctccaaacctcctaattgaaccatccattgtttctatgttgtttaaggttccttgat |
500 |
Q |
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| T |
40623472 |
aaaatctccttttgttctgtaatctccaaacctcctaattgaaccatccattgtttctatgttgtttaaggttccttgat |
40623393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 132 - 423
Target Start/End: Complemental strand, 27512125 - 27511834
Alignment:
| Q |
132 |
agaacctttgcttatgtccaccaattgtgacctgtgcagtcttggaatgaagttcacagaccttatgacgcctatgatagtctctacagttactaagatc |
231 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||||| |||||| |||||||||| ||||||||||| ||| ||||||| ||||| ||||||||||||| |
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| T |
27512125 |
agaacctttgcttatgtccaccaagtgtcacctgtgaagtctttgaatgaagtttgcagaccttatggcgcatatgatatcctctatagttactaagatc |
27512026 |
T |
|
| Q |
232 |
agcttgacaaccatccacaagacatgaaactatctgagtcccattgttaatagctctagctctcttagatgaccctgaagttgatgatgatgaagatgtc |
331 |
Q |
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| T |
27512025 |
agcttgacaaccatccgcaagacttgaaactatctgagttccattgttaatagctctagctttcttagatgaccctgaagttgaagatgatgaagatgtt |
27511926 |
T |
|
| Q |
332 |
attttggtaaatccaccaacatctttggactttgttagccctgattcagtgctagaatttccaacatggccaagcttcaaatcaacagaaaa |
423 |
Q |
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| T |
27511925 |
attttggtaaatccaccaacatctttggactttgtaagccctgattcagcgctagaatttccaacatggccaagcttcaaatcaacaaaaaa |
27511834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 298 - 425
Target Start/End: Original strand, 27270398 - 27270525
Alignment:
| Q |
298 |
agatgaccctgaagttgatgatgatgaagatgtcattttggtaaatccaccaacatctttggactttgttagccctgattcagtgctagaatttccaaca |
397 |
Q |
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| T |
27270398 |
agatgaccctgaagttgaagatgatgaagatttcattttggtaaatccaccaacatctttggactttgtaagccctgatttagtgctagaatttccaaca |
27270497 |
T |
|
| Q |
398 |
tggccaagcttcaaatcaacagaaaaat |
425 |
Q |
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|||||||||||||||||| || |||||| |
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| T |
27270498 |
tggccaagcttcaaatcagcaaaaaaat |
27270525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 114 - 262
Target Start/End: Complemental strand, 45410729 - 45410581
Alignment:
| Q |
114 |
acctgctacattgctggcagaacctttgcttatgtccaccaattgtgacctgtgcagtcttggaatgaagttcacagaccttatgacgcctatgatagtc |
213 |
Q |
| |
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|||||||||| || |||||||||||||| ||| | |||| |||||| |||| || ||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
45410729 |
acctgctacactgttggcagaacctttgtttaaggccacaaattgtaacctctggagtcttggaatgaagttcacaaaccttatgacgcctatgataatc |
45410630 |
T |
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| Q |
214 |
tctacagttactaagatcagcttgacaaccatccacaagacatgaaact |
262 |
Q |
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|||||| ||||||||||||| | || |||||||||||||| |||||| |
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| T |
45410629 |
tctacaattactaagatcagaattgcacccatccacaagacaagaaact |
45410581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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