View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_high_36 (Length: 483)
Name: NF0154_2D_high_36
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 30 - 283
Target Start/End: Complemental strand, 37529202 - 37528949
Alignment:
| Q |
30 |
caggcacagaactggtgtgtgatacagaaacgtggtacgaaggattttaagaggagtgtagtgtagtgaggtgggtcagtgggccttcaaagttaaggat |
129 |
Q |
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| T |
37529202 |
caggcacagaactggtgtgtgatacagaaacgtggtacgaaggattttaagaggagtgtagtgtagtgaggtgggtcagtgggccttcaaagttaaggat |
37529103 |
T |
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| Q |
130 |
ttacacaacagaaattttccccccgtgtatcccgcgggatactgcactcctatatatctaatcctaatctaatctatataacttttatttatgcnnnnnn |
229 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37529102 |
ttacacaacagaaaatttccccccgtgtatcccgcgggatactgcactcctatatatctaatcctaatctaatctatataacttttatttatgcaaaaaa |
37529003 |
T |
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| Q |
230 |
nttaattctaatctaaaatactatagtatagtactattatacagtcaaataacc |
283 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37529002 |
attaaatctaatctaaaatactatagtatagtactattatacagtcaaataacc |
37528949 |
T |
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