View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Query
Query hiting target
Query hiting target's complemental strand
Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0154_2D_high_4 (Length: 1080)
Name: NF0154_2D_high_4
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0154_2D_high_4
Alignment Details
Target: chr6 (Bit Score: 813; Significance: 0; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 813; E-Value: 0
Query Start/End: Original strand, 20 - 915
Target Start/End: Original strand, 2355698 - 2356592
Alignment:
Q
20
taatggttctaagagcaaagaagctcctatatagtggctggtgcatggccaatacttggtcacctcccattgttaaaggcttccaaagcaccacatagaa
119
Q
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2355698
taatggttctaagagcaaagaagctcctata--gtggctggtgcatggccaatacttggtcacctcccattgttaaaggcttccaaagcaccacatagaa
2355795
T
Q
120
ctttaggtgatttagctgataaatatggacccttgttcaccatcaaacttggttccaaaaatgctttagtacttagcaattcggaaatggcgaaggaatg
219
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
T
2355796
ctttaggtgatttagctgataaatatggacccttgttcaccatcaaacttggttccaaaaatgctttggtacttagcaattcggaaatggcgaaggaatg
2355895
T
Q
220
tttcaccaaatttgacgttgcaatttccactcgtcctaaacttgttgcaactgaacatttggcttacaatggagccatgttaattctatcaccttatggt
319
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
T
2355896
tttcaccaaatttgacgttgcaatttccactcgtcctaaacttgttgcaactgaacatttggcttacaatggagccatgttaattctatgaccttatggt
2355995
T
Q
320
ccttattgtcgccaagtgcgtgagatagcattgtcagagatccttgctaatcgtcgtattgaaaaactacaagaaatttgtgttttggaagttcaaactt
419
Q
|||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2355996
ccttattggcgccaagtgcgtaagatagcattgtcagagatccttgttaatcgtcgtattgaaaaactacaagaaatttgtgttttggaagttcaaactt
2356095
T
Q
420
cgattaaagagctcttcaatgtttggaagagtaataacgagtccaactatgtgttagtcgagttgaggcaatggtttattgagttgaatttcaacattgt
519
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2356096
cgattaaagagctcttcaatgtttggaagagtaataacgagtccaactatgtgttagtcgagttgaggcaatggtttattgagttgaatttcaacattgt
2356195
T
Q
520
acttccgatgattgttgggaagcggtattttggtgctatgaatgagctcgatgagaaagaagcgcaaaagtgtatcaaagccgtggaggaaatcttgcgt
619
Q
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
T
2356196
acttccgatgattgttgggaagcgatattttggtgctatgaatgagctcgatgagaaagaagcgcaaaagtgtatcaaagctgtagaggaaatcttgcgt
2356295
T
Q
620
ttgatggggcaattcacggtgggagatgctattccttgtttagaacggtttgattttgacggccatgtgaaagctatgnnnnnnncttctaaggaattgg
719
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
T
2356296
ttgatggggcaattcacggtgggagatgctattccttgtttagaacggtttgattttggtggccatgtgaaagctatgaaaaaaacttctaaggaattgg
2356395
T
Q
720
acatgattttaaatgaatggttgaaggagcgtcgtaatagaacattgaatgaaaaggttgatcgtgatcaagatttcatggacgcattgctttcattgtt
819
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
T
2356396
acatgattttaaatgaatggttgaaggagcgtcgtaatagaacattgaatgaaaaggttgatcgtgatcaagatttcatggacgcattgctttcactgtt
2356495
T
Q
820
tgatggaacaacaattgaaggg-tttgatgccgataccacaatcaaagccacgatgttggtatgtatactttcattatattcgctttatcaatacaa
915
Q
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2356496
tgatggaacaacaattgaagggttttgatgccgataccacaatcaaagccacgatgttggtatgtatactttcattatattcgctttatcaatacaa
2356592
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 935 - 1063
Target Start/End: Original strand, 2357454 - 2357582
Alignment:
Q
935
agtggagggccaatggaacagaaagaaaaactctatacgaacttaccaaacactttgcttcaattgatacatgtttgaattttatttaaacttactctta
1034
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2357454
agtggagggccaatggaacagaaagaaaaactctatacgaacttaccaaacactttgcttcaattgatacatgtttgaattttatttaaacttactctta
2357553
T
Q
1035
tacacatttttataaaattttcacttcat
1063
Q
|||||||||||||||||||||||||||||
T
2357554
tacacatttttataaaattttcacttcat
2357582
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 62 - 300
Target Start/End: Original strand, 2361421 - 2361659
Alignment:
Q
62
gcatggccaatacttggtcacctcccattgttaaaggcttccaaagcaccacatagaactttaggtgatttagctgataaatatggacccttgttcacca
161
Q
||||||||||||||||||||||| | | | ||||| ||| || ||| |||||||| ||||||| || |||||||||||||||||||||||||| |
T
2361421
gcatggccaatacttggtcacctacaactattaaaaaattcacaaaaacctcatagaaccttaggtgcattggctgataaatatggacccttgttcacta
2361520
T
Q
162
tcaaacttggttccaaaaatgctttagtacttagcaattcggaaatggcgaaggaatgtttcaccaaatttgacgttgcaatttccactcgtcctaaact
261
Q
| || |||||||||||| |||||| || ||||||||| ||||||||| |||||||||||||| ||| ||||| | ||||| |||| ||| ||||||||
T
2361521
ttaagcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcacaaaaattgacttggcaatatccaatcgccctaaact
2361620
T
Q
262
tgttgcaactgaacatttggcttacaatggagccatgtt
300
Q
|| |||||| ||||||||| ||||||||| ||||||||
T
2361621
tgaagcaactcaacatttgggttacaatggtgccatgtt
2361659
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 62 - 259
Target Start/End: Original strand, 2366025 - 2366222
Alignment:
Q
62
gcatggccaatacttggtcacctcccattgttaaaggcttccaaagcaccacatagaactttaggtgatttagctgataaatatggacccttgttcacca
161
Q
||||||||||||||||||||||||||| | |||| |||| || |||| |||||||| ||||||| || |||||||||||||||||||||||||| |
T
2366025
gcatggccaatacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgcattggctgataaatatggacccttgttcacta
2366124
T
Q
162
tcaaacttggttccaaaaatgctttagtacttagcaattcggaaatggcgaaggaatgtttcaccaaatttgacgttgcaatttccactcgtcctaaa
259
Q
| || ||||||||||| |||||| || |||||||||| ||||||||| |||||||||||||||||| ||||| | ||||| |||||||| ||||||
T
2366125
ttaagattggttccaaacgtgctttggttcttagcaattgggaaatggcaaaggaatgtttcaccaaaattgacttggcaatatccactcgccctaaa
2366222
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 786 - 886
Target Start/End: Original strand, 2306465 - 2306565
Alignment:
Q
786
atcaagatttcatggacgcattgctttcattgtttgatggaacaacaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgtat
885
Q
|||||||| ||||||| | |||||||||||| ||||||||||||| || ||||||||||||| ||||||| ||||||||||||||| |||||||||||
T
2306465
atcaagatatcatggatgtgttgctttcattgcttgatggaacaaccatcgaagggtttgatggtgataccataatcaaagccacgatattggtatgtat
2306564
T
Q
886
a
886
Q
|
T
2306565
a
2306565
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 786 - 884
Target Start/End: Original strand, 2366767 - 2366865
Alignment:
Q
786
atcaagatttcatggacgcattgctttcattgtttgatggaacaacaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgta
884
Q
||||||| |||||||| | |||||||||||||||||||||||||||||||||| |||||| | ||||||| |||||||||||| | ||||||||||
T
2366767
atcaagacttcatggatgtgatgctttcattgtttgatggaacaacaattgaaggatttgattctgataccataatcaaagccacagtattggtatgta
2366865
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 131 - 334
Target Start/End: Original strand, 2338107 - 2338310
Alignment:
Q
131
ttagctgataaatatggacccttgttcaccatcaaacttggttccaaaaatgctttagtacttagcaattcggaaatggcgaaggaatgtttcaccaaat
230
Q
|||||||||||||||||||| || ||||||||||| ||||| | ||| |||||||| |||| | ||||| ||||||||| |||||||||||||| |
T
2338107
ttagctgataaatatggaccattattcaccatcaagcttggcactaaacatgctttaatactcaacaattgggaaatggccaaggaatgtttcactacga
2338206
T
Q
231
ttgacgttgcaatttccactcgtcctaaacttgttgcaactgaacatttggcttacaatggagccatgttaattctatcaccttatggtccttattgtcg
330
Q
||| | |||| ||||||| || ||||||||||| ||||| |||| ||| |||||||||||||| ||| |||| |||||||||||||| ||
T
2338207
acgacacggtcgtttcgtctcgtccaaagcttgttgcaacagaacacttgggttataatggagccatgtttggtcttgcaccatatggtccttattggcg
2338306
T
Q
331
ccaa
334
Q
||||
T
2338307
ccaa
2338310
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 59 - 225
Target Start/End: Original strand, 2349084 - 2349250
Alignment:
Q
59
ggtgcatggccaatacttggtcacctccca-ttgttaaaggcttccaaagcaccacatagaactttaggtgatttagctgataaatatggacccttgttc
157
Q
|||||||||||||||||||||||||||||| || ||| ||| ||| |||| || ||| ||||||| |||||||||||||||||||| | |||
T
2349084
ggtgcatggccaatacttggtcacctcccaatttttagtggcaaacaac-caccccacagagttttaggtccattagctgataaatatggaccaatattc
2349182
T
Q
158
accatcaaacttggttccaaaaatgctttagtacttagcaattcggaaatggcgaaggaatgtttcac
225
Q
|| ||||| |||||||| ||| |||||||| |||||| ||||| |||||| || ||||||||||||||
T
2349183
actatcaagcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtttcac
2349250
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 786 - 883
Target Start/End: Original strand, 2362157 - 2362254
Alignment:
Q
786
atcaagatttcatggacgcattgctttcattgtttgatggaacaacaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgt
883
Q
||||||| |||||||| || |||||||||||| |||||| |||| |||||||||||| |||| | ||||| ||||||||||| || || |||||||||
T
2362157
atcaagacttcatggatgccttgctttcattgcttgatgaaacaccaattgaagggtgtgattctgatactacaatcaaagcgacaatattggtatgt
2362254
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 2305786 - 2305877
Alignment:
Q
131
ttagctgataaatatggacccttgttcaccatcaaacttggttccaaaaatgctttagtacttagcaattcggaaatggcgaaggaatgttt
222
Q
|||||||||||||||||||| || ||||||||||| |||||||| ||| ||||||| | || | ||||| ||||||||| |||||||||||
T
2305786
ttagctgataaatatggaccattattcaccatcaagcttggttctaaacgtgctttaattctcaacaattgggaaatggccaaggaatgttt
2305877
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 809 - 885
Target Start/End: Original strand, 2338806 - 2338882
Alignment:
Q
809
ctttcattgtttgatggaacaacaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgtat
885
Q
||||||||| ||||||||||||| |||||||||||||| | ||||||| |||||||||||| | |||||||||||
T
2338806
ctttcattgcttgatggaacaaccattgaagggtttgacggtgataccataatcaaagccacactattggtatgtat
2338882
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 633 - 885
Target Start/End: Original strand, 2349664 - 2349922
Alignment:
Q
633
tcacggtgggagatgctattccttgtttagaacggtttgattttgacggccatgtgaaagctatgnnnnnnncttctaaggaattggacatgattttaaa
732
Q
||||||||||||||| ||||||||||||| || |||||||||||| || ||| |||| || ||| |||||| |||| ||||| ||||||
T
2349664
tcacggtgggagatgttattccttgtttaaaatggtttgattttggtggtcatatgaaggccatggatgaaacttctacggaaatggacgaaattttagg
2349763
T
Q
733
tgaatggttgaaggagcgtcg---taatagaacattgaatgaaaag---gttgatcgtgatcaagatttcatggacgcattgctttcattgtttgatgga
826
Q
||| ||||||||||||| ||| ||| || || |||| ||||||| | ||||| |||||||| ||||||| | || |||||||| ||||||||
T
2349764
tgagtggttgaaggagcatcgccataaaaggactttgactgaaaaggctgatgatcaagatcaagacatcatggatgtgttaatttcattgcttgatgga
2349863
T
Q
827
acaacaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgtat
885
Q
| ||| || |||||||||||| ||||||| ||||||||| || || |||||||||||
T
2349864
aaaaccatggaagggtttgattgtgataccataatcaaagcaacaatattggtatgtat
2349922
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 113 - 326
Target Start/End: Original strand, 4303234 - 4303447
Alignment:
Q
113
catagaactttaggtgatttagctgataaatatggacccttgttcaccatcaaacttggttccaaaaatgctttagtacttagcaattcggaaatggcga
212
Q
|||||||| ||||||| || ||||| | ||||||||| || ||||| |||||||||||||| | ||||||||| || || || |||| |||||||||
T
4303234
catagaaccttaggtgcattggctgacacatatggacctttattcacaatcaaacttggttcgagaaatgctttggtgctaagtaattgggaaatggctg
4303333
T
Q
213
aggaatgtttcaccaaatttgacgttgcaatttccactcgtcctaaacttgttgcaactgaacatttggcttacaatggagccatgttaattctatcacc
312
Q
||||||||||||||||| ||||| | ||||||||| ||| |||| ||||| ||||| ||||| || ||||||||||||||||||| ||| | | ||
T
4303334
aggaatgtttcaccaaaattgacttggcaatttccgatcgccctacacttgaaacaactcaacatatgacttacaatggagccatgttttttcaagctcc
4303433
T
Q
313
ttatggtccttatt
326
Q
|||||||||||||
T
4303434
ctatggtccttatt
4303447
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 786 - 883
Target Start/End: Original strand, 4303928 - 4304025
Alignment:
Q
786
atcaagatttcatggacgcattgctttcattgtttgatggaacaacaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgt
883
Q
||||||| |||||||| | ||||||||||| |||||||||||||||||||||| |||||| | |||||| |||||||||||| || ||||||||
T
4303928
atcaagacttcatggatgtgatgctttcattgcttgatggaacaacaattgaaggatttgattctgataccgtaatcaaagccacaatactggtatgt
4304025
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 615 - 690
Target Start/End: Original strand, 4303745 - 4303820
Alignment:
Q
615
tgcgtttgatggggcaattcacggtgggagatgctattccttgtttagaacggtttgattttgacggccatgtgaa
690
Q
|||||||||||||| ||||| |||||||||||| |||||| |||| || |||||||||||| |||||||||||
T
4303745
tgcgtttgatgggggtgttcacagtgggagatgctcttccttttttaaaatggtttgattttgggggccatgtgaa
4303820
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 191 - 300
Target Start/End: Original strand, 41340096 - 41340205
Alignment:
Q
191
cttagcaattcggaaatggcgaaggaatgtttcaccaaatttgacgttgcaatttccactcgtcctaaacttgttgcaactgaacatttggcttacaatg
290
Q
|||||||||| ||||||||| |||||||||| |||||| ||||| | ||| |||| | ||| |||||||||| | |||| ||||||||||||||||||
T
41340096
cttagcaattgggaaatggctgaggaatgttttaccaaagttgacttggcagtttcaaatcgccctaaacttgaagtaactaaacatttggcttacaatg
41340195
T
Q
291
gagccatgtt
300
Q
||||||||||
T
41340196
gagccatgtt
41340205
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 5e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 758 - 886
Target Start/End: Complemental strand, 5805545 - 5805414
Alignment:
Q
758
agaacattgaatgaaaaggttgatcgtga---tcaagatttcatggacgcattgctttcattgtttgatggaacaacaattgaagggtttgatgccgata
854
Q
||||| |||| ||||||||||||| |||| |||||| |||||||| | || ||||||||| ||||||||||||| ||||||||||||||| ||||
T
5805545
agaactttgagtgaaaaggttgatggtgaagatcaagacttcatggatgtgttactttcattgcttgatggaacaactattgaagggtttgattgtgata
5805446
T
Q
855
ccacaatcaaagccacgatgttggtatgtata
886
Q
||| ||||||||||| || ||||||||||||
T
5805445
ccatgatcaaagccacaatattggtatgtata
5805414
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 225
Target Start/End: Complemental strand, 5806259 - 5806093
Alignment:
Q
59
ggtgcatggccaatacttggtcacctccca-ttgttaaaggcttccaaagcaccacatagaactttaggtgatttagctgataaatatggacccttgttc
157
Q
|||||||||||||||||||||||||||||| || || ||| ||| ||||| ||||||| ||||||| ||| ||||||| ||||||| | |||
T
5806259
ggtgcatggccaatacttggtcacctcccaattttttgtggcacacaa-gcaccccatagaatcttaggtgccctaggtgataaacatggaccaatattc
5806161
T
Q
158
accatcaaacttggttccaaaaatgctttagtacttagcaattcggaaatggcgaaggaatgtttcac
225
Q
|||||||| |||||| | ||| |||| |||||||| | ||||| ||||||||| ||||||||||||||
T
5806160
accatcaagcttggtcctaaacatgccttagtactcaacaattgggaaatggctaaggaatgtttcac
5806093
T
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HSP Overview ] [
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Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 407 - 445
Target Start/End: Complemental strand, 5805911 - 5805873
Alignment:
Q
407
gaagttcaaacttcgattaaagagctcttcaatgtttgg
445
Q
||||||||||| ||||||||||||||||||||| |||||
T
5805911
gaagttcaaacatcgattaaagagctcttcaatatttgg
5805873
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University
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