View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_high_41 (Length: 465)

Name: NF0154_2D_high_41
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_high_41
NF0154_2D_high_41
[»] chr2 (4 HSPs)
chr2 (1-430)||(18542561-18542990)
chr2 (239-377)||(18551478-18551616)
chr2 (92-209)||(18551122-18551243)
chr2 (1-79)||(18555917-18555995)
[»] chr1 (2 HSPs)
chr1 (387-419)||(50901584-50901616)
chr1 (387-425)||(18459267-18459305)
[»] chr5 (2 HSPs)
chr5 (387-425)||(25627060-25627097)
chr5 (381-422)||(7918508-7918548)
[»] chr3 (3 HSPs)
chr3 (387-425)||(27093397-27093434)
chr3 (382-419)||(10445181-10445218)
chr3 (381-409)||(10969945-10969973)
[»] chr4 (1 HSPs)
chr4 (387-419)||(37274501-37274533)


Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 18542561 - 18542990
Alignment:
Q  1 gaacatcattatttaaattagtttcttttaccattgtccttggattgtagcacttatattatcaaatctaaatggataagaaataccattaaatttttag 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18542561 gaacatcattatctaaattagtttcttttaccattgtccttggattgtaccacttatattatcaaatctaaatggataagaaataccattaaatttttag 18542660  T
Q  101 aaagcaaaaagtgactttcaagacccaagcataatttttacactcaagtttattttgccaaatcattttttacacgcattcaaatataacaattttattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18542661 aaagcaaaaagtgactttcaagacccaagcataatttttactctcaagtttattttgccaaatcattttttacatgcattcaaatataacaattttattt 18542760  T
Q  201 taaagtaactttagtgctatcgaaacaaacacactaacaattcaaaaaactaaacaaactttaagagctctaaagaaagagagatatgacgtgcaatgtc 300  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18542761 taaagtaactttagcactatcgaaacaaacacactaacaattcaaaaaactaaacaaactttaagagctctaaagaaagagagatatgacgtgcaatgtc 18542860  T
Q  301 ggatgggtattataacttgtctatatttaggaacttgcaataagaattaatttgattgtgtgattaagtttatggctgacgataatccacttgggttggc 400  Q
    |||||| ||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  18542861 ggatggatattataacttgtatatatttatgaacttgcaatcagaattaatttgattgtgtgattaagtttatggctgaggataacccacttgggttggc 18542960  T
Q  401 ctagtggtaattggcttggaacttgaaagt 430  Q
    |||||| |||||||||||| | ||||||||    
T  18542961 ctagtgataattggcttgggagttgaaagt 18542990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 239 - 377
Target Start/End: Original strand, 18551478 - 18551616
Alignment:
Q  239 aattcaaaaaactaaacaaactttaagagctctaaagaaagagagatatgacgtgcaatgtcggatgggtattataacttgtctatatttaggaacttgc 338  Q
    |||||||| |||||||||||| | ||||||||||||||||||||||| |||| ||||||||  ||||||||||||| ||||| |||||||||||||||||    
T  18551478 aattcaaacaactaaacaaacatcaagagctctaaagaaagagagatgtgacatgcaatgtttgatgggtattataccttgtatatatttaggaacttgc 18551577  T
Q  339 aataagaattaatttgattgtgtgattaagtttatggct 377  Q
    ||  ||||||||||||| || |||| |||||||||||||    
T  18551578 aaccagaattaatttgactgcgtgaataagtttatggct 18551616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 18551122 - 18551243
Alignment:
Q  92 aatttttagaaagcaaaaagtgactttcaagacccaagcataatttttacactcaagtttattttgccaaatcattttt---tacacgcattcaaatata 188  Q
    |||||||  ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||   || ||||||||||| |||    
T  18551122 aatttttgcaaagctaaaagagactttcaagacccaagcataatttttacgctcaagtttattttgacaaatcacttttacataaacgcattcaaacata 18551221  T
Q  189 a-caattttattttaaagtaac 209  Q
    | |||||||| |||||||||||    
T  18551222 atcaattttagtttaaagtaac 18551243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 18555917 - 18555995
Alignment:
Q  1 gaacatcattatttaaattagtttcttttaccattgtccttggattgtagcacttatattatcaaatctaaatggataa 79  Q
    ||||||| |||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  18555917 gaacatctttatctaaattagtttctttcaccattgtccttggattgtaccacttatattatcaaagctaaatggataa 18555995  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 419
Target Start/End: Original strand, 50901584 - 50901616
Alignment:
Q  387 ccacttgggttggcctagtggtaattggcttgg 419  Q
    |||||||||||||||||||||||||||||||||    
T  50901584 ccacttgggttggcctagtggtaattggcttgg 50901616  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 425
Target Start/End: Complemental strand, 18459305 - 18459267
Alignment:
Q  387 ccacttgggttggcctagtggtaattggcttggaacttg 425  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  18459305 ccacttgggttggtctagtggtaattggcttgggacttg 18459267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 425
Target Start/End: Original strand, 25627060 - 25627097
Alignment:
Q  387 ccacttgggttggcctagtggtaattggcttggaacttg 425  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  25627060 ccacttgggttggcctagtggt-attggcttggaacttg 25627097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 7918548 - 7918508
Alignment:
Q  381 gataatccacttgggttggcctagtggtaattggcttggaac 422  Q
    ||||| |||||||||||||||||||||| |||||||||||||    
T  7918548 gataacccacttgggttggcctagtggt-attggcttggaac 7918508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 425
Target Start/End: Complemental strand, 27093434 - 27093397
Alignment:
Q  387 ccacttgggttggcctagtggtaattggcttggaacttg 425  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  27093434 ccacttgggttggcctagtggt-attggcttggaacttg 27093397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 10445218 - 10445181
Alignment:
Q  382 ataatccacttgggttggcctagtggtaattggcttgg 419  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  10445218 ataacccacttgggttggcctagtggcaattggcttgg 10445181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 409
Target Start/End: Complemental strand, 10969973 - 10969945
Alignment:
Q  381 gataatccacttgggttggcctagtggta 409  Q
    |||||||||||||||||||||||||||||    
T  10969973 gataatccacttgggttggcctagtggta 10969945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 419
Target Start/End: Complemental strand, 37274533 - 37274501
Alignment:
Q  387 ccacttgggttggcctagtggtaattggcttgg 419  Q
    ||||||||||||||||||| |||||||||||||    
T  37274533 ccacttgggttggcctagtcgtaattggcttgg 37274501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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