View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_high_44 (Length: 436)
Name: NF0154_2D_high_44
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_high_44 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 148 - 417
Target Start/End: Complemental strand, 38279880 - 38279615
Alignment:
| Q |
148 |
atgaaattataagtacatgcaattctatgtatttaatatatatctcatatatattgaaattgaaaggtagccatgttcagaaaggtccatttgatattta |
247 |
Q |
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| T |
38279880 |
atgaaattataagtacatgcaattccatgtatttaatatatatctcatgt----tgaaattgagaggtagccatgttcagaaaggtccatttgatattta |
38279785 |
T |
|
| Q |
248 |
taaacacgtgtgctaatacattgaattaaatttggcaagcagcaatagcaataacaagatgagaggtttaattgttgtatttgttttgtttttggccacg |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38279784 |
taaacacgtgtgctaatacattgaattaaatttggcaagcagcaatagcaataacaagatgagaggtttaactgttgtatttgttttgtttttggccacg |
38279685 |
T |
|
| Q |
348 |
attgcgagaagcctaggaaacccttgacttcagatatcgttttctcttttatttctacacccgaactcca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38279684 |
attgcgagaagcctaggaaacccttgacttcagatatcgttttctcttttatttctacacccgaactcca |
38279615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 38280029 - 38279948
Alignment:
| Q |
1 |
ctcttcttatatatgcttactatctttagtgatgatgattgaagataattgaattacgatattagattataaatttcttacc |
82 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38280029 |
ctcttcttatatatgcttactatctttagtgatgatgattgaagataattgaattacgatattagattataaatttcttacc |
38279948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 293 - 415
Target Start/End: Complemental strand, 38269930 - 38269807
Alignment:
| Q |
293 |
tagcaataacaagatgagaggtttaattgttgtatttgttttgtttttg-gccacgattgcgagaagcctaggaaacccttgacttcagatatcgttttc |
391 |
Q |
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||||||||||||||||||||||| | ||| | ||||||||||||||||| | ||||||| |||||||||| || ||||||| | |||||||| | ||| |
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| T |
38269930 |
tagcaataacaagatgagaggttcagttgctatatttgttttgtttttgtgtaacgattgaaagaagcctagaaaccccttgagtccagatatcatattc |
38269831 |
T |
|
| Q |
392 |
tcttttatttctacacccgaactc |
415 |
Q |
| |
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||||| |||||||||| ||||||| |
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|
| T |
38269830 |
tctttgatttctacactcgaactc |
38269807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 396
Target Start/End: Complemental strand, 38302338 - 38302238
Alignment:
| Q |
297 |
aataacaagatgagaggtttaattgttgtatttgttttgtttttg-gccacgattgcgagaagcctaggaaacccttgacttcagatatcgttttctctt |
395 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||| | ||||||| ||||||||||| || ||||| | | |||||||| | ||||||| |
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| T |
38302338 |
aataacaagatgagaggttcaattgttgtatttgttttgtctttgtgtaacgattgagagaagcctagaaaccccttcaatccagatatcatattctctt |
38302239 |
T |
|
| Q |
396 |
t |
396 |
Q |
| |
|
| |
|
|
| T |
38302238 |
t |
38302238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 407
Target Start/End: Complemental strand, 38277799 - 38277685
Alignment:
| Q |
293 |
tagcaataacaagatgagaggtttaattgttgtatttgttttgtttttg-gccacgattgcgagaagcctaggaaacccttgacttcagatatcgttttc |
391 |
Q |
| |
|
|||||||||||| ||||||| || |||||||||||||| ||||| |||| | ||||||| ||||||| ||| || ||||||| | |||||||| | ||| |
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| T |
38277799 |
tagcaataacaaaatgagag-ttcaattgttgtatttgatttgtctttgtgtaacgattgagagaagcatagaaaccccttgagtccagatatcatattc |
38277701 |
T |
|
| Q |
392 |
tcttttatttctacac |
407 |
Q |
| |
|
||||| |||||||||| |
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|
| T |
38277700 |
tctttgatttctacac |
38277685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 407
Target Start/End: Complemental strand, 38273958 - 38273846
Alignment:
| Q |
296 |
caataacaagatgagaggtttaattgttgtatttgttttgtttttg-gccacgattgcgagaagcctaggaaacccttgacttcagatatcgttttctct |
394 |
Q |
| |
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||||||||| ||||||| || |||||||||||||||||||| |||| | || |||| ||||||||||| || |||||| | |||| ||| | |||||| |
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| T |
38273958 |
caataacaaaatgagagtttcaattgttgtatttgttttgtctttgtgtaactattgagagaagcctagaaactccttgagtccagacatcatattctct |
38273859 |
T |
|
| Q |
395 |
tttatttctacac |
407 |
Q |
| |
|
|| |||||||||| |
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|
| T |
38273858 |
ttgatttctacac |
38273846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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