View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_high_47 (Length: 421)
Name: NF0154_2D_high_47
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_high_47 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 130 - 419
Target Start/End: Complemental strand, 7178165 - 7177876
Alignment:
| Q |
130 |
ctcttataagatacaacataaacatttatatataaagttttaatgcttcacctattctattttatcctttgattctatcttggtgtagccttctggaagt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7178165 |
ctcttataagatacaacataaacatttatatataaagttttaattcttcaccttttctattttatcctttgattctatcttggtgtagccttctggaagt |
7178066 |
T |
|
| Q |
230 |
aagtgatttacaacttctgtcactgatcgtaatttcttaccagtagcggtaccatgagtatagtacttcatgaaagnnnnnnnnnnnnnnnnnnntgaag |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7178065 |
aagtgatttacaacttctgtcactgatcgtaatttcttaccagtagtggtaccatgagtatagtacttcatgaaagaaaaacaaaacaaaaaaaatgaag |
7177966 |
T |
|
| Q |
330 |
ataaatgagtgttattaacattgacaaatatatactatctatcatataattatataaaaatacactgaagaaattatttttaccgtatct |
419 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
7177965 |
ataaatgagtgttgttaacattgacaaatatatactatctatcatataattatatgaaaatacactaaagaaattatttttaccgtatct |
7177876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 149 - 296
Target Start/End: Complemental strand, 7168157 - 7168010
Alignment:
| Q |
149 |
aaacatttatatataaagttttaatgcttcacctattctattttatcctttgattctatcttggtgtagccttctggaagtaagtgatttacaacttctg |
248 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| | || |||| |||||||| |||| | ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7168157 |
aaacatttttatataaagttttaatgcttcacctttccttttttttcctttgaatctaacatggtgtagccttccggaagtaagtgatttacaacttcct |
7168058 |
T |
|
| Q |
249 |
tcactgatcgtaatttcttaccagtagcggtaccatgagtatagtact |
296 |
Q |
| |
|
| ||||||||||||| ||||||| ||| |||| |||||| ||| |||| |
|
|
| T |
7168057 |
taactgatcgtaattgcttaccactagtggtatcatgagcataatact |
7168010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 7168351 - 7168283
Alignment:
| Q |
21 |
acacctgcgtccctcacttcaagactgttatcttcctccttggcctcaacgtcctaaaaaatatacgga |
89 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
7168351 |
acacctgcatccctcacttcaagactgttatcttcatccttggcctcaatgtcctaaaaaatatacgga |
7168283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 7178229 - 7178166
Alignment:
| Q |
30 |
tccctcacttcaagactgttatcttcctccttggcctcaacgtcctaa-aaaatatacggatta |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7178229 |
tccctcacttcaagactgttatcttcctccttggcctcaacgtcctaaaaaaatatacggatta |
7178166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 7168209 - 7168176
Alignment:
| Q |
129 |
cctcttataagatacaacataaacatttatatat |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
7168209 |
cctcttataagatacaacataaacatttatatat |
7168176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 6768154 - 6768197
Alignment:
| Q |
228 |
gtaagtgatttacaacttctgtcactgatcgtaatttcttacca |
271 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
6768154 |
gtaagtgatttacaacttccttaactgatcgtaatttcttacca |
6768197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1982 times since January 2019
Visitors: 2203