View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_high_52 (Length: 408)
Name: NF0154_2D_high_52
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_high_52 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 40552101 - 40551712
Alignment:
| Q |
13 |
actggtcaagtttgaacctaagcctgagttggcagatacttctaaggttttgaggagagttcttgccttgcgcctatttatcttttcctagggcaatttt |
112 |
Q |
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| T |
40552101 |
actggtcaagtttgaacctaagcctgagttggcagatacttctaaggttttgaggagagttcttgccttgcgcttatttatcttttcctagggcaatttt |
40552002 |
T |
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| Q |
113 |
taaactaaattatacgtgtgcagtttttgaaaaattaatcatatacggattgtttcagtagttcagtggtattattgttttcagttgtttagattactct |
212 |
Q |
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| T |
40552001 |
taaactaaattatacgtgtgcagtttttgaaaaattaatcatatacggattgtttcagtagttctgtggtattattgttttcagttgtttagatcactct |
40551902 |
T |
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| Q |
213 |
aacattgggatagggcgacaaatttacatacttaaatctgtactcttatgcatggttatttcgcattcatgtctttgtttatgtattctatttattagca |
312 |
Q |
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| T |
40551901 |
aacattgggatagggcgacaaatttacatacttaaatctgtactcttatgcatggttatttcgcattcatatctttgtttatgtattctatttattagca |
40551802 |
T |
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| Q |
313 |
ggcatacaaatcactaaatatggatagcttgtagcactgagttttctatttcgagtatttttctaaccactatcttgatttcagattcat |
402 |
Q |
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| T |
40551801 |
ggcatacaaatcactaaatatggatagcttgtagcaccgagttttctatttcgagtatttttctaaccactatcttgatttcagattcat |
40551712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 401
Target Start/End: Complemental strand, 40569059 - 40568934
Alignment:
| Q |
275 |
gcattcatgtctttgtttatgtattctatttattagcaggcatacaaatcactaaatatggatagcttgtagcactgagttttctatttcgagtattttt |
374 |
Q |
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| T |
40569059 |
gcattcatgtctt-gtttactaattctattcagcagcaggcatacatatcactaattgtggatgacttgcagcactgagttttctgtttcacatattttt |
40568961 |
T |
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| Q |
375 |
ctaaccactatcttgatttcagattca |
401 |
Q |
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| T |
40568960 |
ctaaccactatcttgatttcagattca |
40568934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 40569173 - 40569110
Alignment:
| Q |
110 |
ttttaaactaaattatacgtgtgcagtttttgaaaaattaatcatatacggattgtttcagtagtt |
175 |
Q |
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| T |
40569173 |
ttttaaactaaattata--tatgcagtttttgaaaaattagtcatataccgactgtttcagtagtt |
40569110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 7e-56; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 147 - 389
Target Start/End: Complemental strand, 15110539 - 15110297
Alignment:
| Q |
147 |
ttaatcatatacggattgtttcagtagttcagtggtattattgttttcagttgtttagattactctaacattgggatagggcgacaaatttacatactta |
246 |
Q |
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| T |
15110539 |
ttaattatatacggattgttttaatagttttgtggtattattgtttttggttgttcggattactctaaaattgggatagggtgacaaatttacgtactta |
15110440 |
T |
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| Q |
247 |
aatctgtactcttatgcatggttatttcgcattcatgtctttgtttatgtattctatttattagcaggcatacaaatcactaaatatggatagcttgtag |
346 |
Q |
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| T |
15110439 |
catttgtactcttatgcgtgaatatttcatattcatctcgtcgtttatgtattctattcaatagcagccatacaaatcactaaatatggatggcttgtag |
15110340 |
T |
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| Q |
347 |
cactgagttttctatttcgagtatttttctaaccactatcttg |
389 |
Q |
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| T |
15110339 |
caccgagttgtctatcttgagtgttttcctaacgactatcttg |
15110297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 181 - 304
Target Start/End: Original strand, 15109895 - 15110018
Alignment:
| Q |
181 |
gtattattgttttcagttgtttagattactctaacattgggatagggcgacaaatttacatacttaaatctgtactcttatgcatggttatttcgcattc |
280 |
Q |
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||||| ||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| | | ||| |||||| ||||| |
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| T |
15109895 |
gtattcttgtttttggttgtttggattactctaacattgggatagggtgacaaatttacgtacttaaatttgtactctaacgagtggatatttcacattc |
15109994 |
T |
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| Q |
281 |
atgtctttgtttatgtattctatt |
304 |
Q |
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| T |
15109995 |
atctcttcgtttatgtattctatt |
15110018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 400
Target Start/End: Original strand, 15110059 - 15110143
Alignment:
| Q |
316 |
atacaaatcactaaatatggatagcttgtagcactgagttttctatttcgagtatttttctaaccactatcttgatttcagattc |
400 |
Q |
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||||||||||||||||||| || ||| ||| ||||||||| || ||||| ||||||||||||| ||||||||||||||| |||| |
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| T |
15110059 |
atacaaatcactaaatatgaatgacttatagaactgagtttcctgtttcgcgtatttttctaacgactatcttgatttcaaattc |
15110143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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