View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_high_54 (Length: 398)
Name: NF0154_2D_high_54
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 40192478 - 40192749
Alignment:
| Q |
1 |
tgatggggcgtttggtttttgggtcccaccaagtgtatttctatttcacacagaaacagaggaccaaactaaagtagagaagtacatgagatgttgcttt |
100 |
Q |
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| T |
40192478 |
tgatggggcgtttggtttttgggtcccaccaagtgtatttctatttcacacagaaacagaggaccaaactaaagtagagaagtacatgagatgttgcttt |
40192577 |
T |
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| Q |
101 |
tttatataagggacagtttaccggnnnnnnncaattttgtttcctataatatcctttatagccgccttcttcattactacatttggaatgggtactttgg |
200 |
Q |
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| T |
40192578 |
tttatataagggacagtttaccggtttttttcaattttgtttcctataatatcctttatagccgccttcttcattactacatttggaatgggtactttgg |
40192677 |
T |
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| Q |
201 |
taattcctctactctaaaagaaaatatagttaagaggcttagagcattataatgggaaaataaaaataatat |
272 |
Q |
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| T |
40192678 |
taattcctctactctaaaagaaaatatagttaagaggcttagagcattataatgggaaaataaaaataatat |
40192749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 264 - 351
Target Start/End: Original strand, 40193466 - 40193553
Alignment:
| Q |
264 |
aaataatatttgctcaaaaatgatttatattgagacacatgaaatattatgttggtttgattgcaataatcgttgagtatgactcata |
351 |
Q |
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| T |
40193466 |
aaataatatttgctcaaaaatgatttatattgagacacatgaaatattatgttggtttgattgcaatgatcgttgagtatgactcata |
40193553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 380
Target Start/End: Original strand, 40193597 - 40193627
Alignment:
| Q |
350 |
taaattcagttacaatctaagtaaccttaat |
380 |
Q |
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| T |
40193597 |
taaattcagttacaatctaagtaaccttaat |
40193627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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