View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_high_6 (Length: 893)

Name: NF0154_2D_high_6
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_high_6
NF0154_2D_high_6
[»] chr7 (28 HSPs)
chr7 (1-530)||(45038327-45038855)
chr7 (659-874)||(45038122-45038330)
chr7 (528-652)||(11016857-11016981)
chr7 (530-658)||(34854715-34854843)
chr7 (530-658)||(41018248-41018376)
chr7 (530-652)||(38975795-38975917)
chr7 (532-652)||(4290537-4290657)
chr7 (530-652)||(15027532-15027654)
chr7 (539-658)||(27028813-27028932)
chr7 (572-652)||(48000769-48000849)
chr7 (572-655)||(7671934-7672017)
chr7 (527-658)||(29053334-29053456)
chr7 (532-658)||(45231874-45231996)
chr7 (578-652)||(42628333-42628407)
chr7 (559-625)||(22764753-22764819)
chr7 (572-658)||(4649352-4649440)
chr7 (529-596)||(48000683-48000750)
chr7 (543-628)||(30217504-30217588)
chr7 (603-652)||(48000720-48000769)
chr7 (572-658)||(10419490-10419576)
chr7 (542-588)||(41945945-41945991)
chr7 (542-588)||(42628385-42628431)
chr7 (542-599)||(11016948-11017005)
chr7 (621-658)||(42628315-42628352)
chr7 (544-640)||(41945859-41945955)
chr7 (546-597)||(48000818-48000869)
chr7 (542-595)||(4290628-4290681)
chr7 (542-607)||(27028730-27028795)
[»] chr1 (44 HSPs)
chr1 (529-652)||(5995358-5995481)
chr1 (530-652)||(29179623-29179745)
chr1 (530-652)||(48993943-48994065)
chr1 (530-658)||(37155036-37155164)
chr1 (530-652)||(48498405-48498527)
chr1 (572-658)||(34062241-34062327)
chr1 (543-658)||(9157313-9157428)
chr1 (542-655)||(44706806-44706920)
chr1 (542-652)||(32540774-32540884)
chr1 (572-652)||(29371400-29371480)
chr1 (551-658)||(4609007-4609114)
chr1 (542-640)||(1091582-1091680)
chr1 (542-651)||(17127591-17127700)
chr1 (572-652)||(741528-741608)
chr1 (578-652)||(8337877-8337951)
chr1 (578-658)||(46333966-46334046)
chr1 (540-658)||(19711200-19711316)
chr1 (601-667)||(1819500-1819566)
chr1 (547-649)||(45728294-45728396)
chr1 (578-658)||(47303433-47303513)
chr1 (542-629)||(36290456-36290543)
chr1 (529-604)||(46931986-46932061)
chr1 (570-658)||(38674525-38674611)
chr1 (572-652)||(15220843-15220923)
chr1 (590-658)||(28928799-28928867)
chr1 (572-652)||(33219605-33219685)
chr1 (572-652)||(49444939-49445017)
chr1 (572-658)||(5694910-5694995)
chr1 (542-596)||(5995451-5995505)
chr1 (543-616)||(21630045-21630118)
chr1 (542-596)||(15220893-15220947)
chr1 (616-658)||(46334022-46334064)
chr1 (572-658)||(48604967-48605053)
chr1 (621-658)||(48823905-48823942)
chr1 (622-658)||(8337933-8337969)
chr1 (616-652)||(21630068-21630104)
chr1 (616-652)||(28395663-28395699)
chr1 (542-598)||(46932062-46932117)
chr1 (546-588)||(33219663-33219705)
chr1 (542-596)||(48993919-48993973)
chr1 (616-658)||(49444987-49445029)
chr1 (590-619)||(7788307-7788336)
chr1 (546-611)||(28395643-28395708)
chr1 (621-658)||(34062229-34062266)
[»] chr5 (35 HSPs)
chr5 (530-652)||(19655148-19655270)
chr5 (529-658)||(19598321-19598449)
chr5 (544-652)||(30117854-30117962)
chr5 (548-658)||(16439146-16439256)
chr5 (546-658)||(3180080-3180191)
chr5 (530-652)||(291087-291209)
chr5 (554-652)||(29699381-29699479)
chr5 (572-652)||(3899871-3899951)
chr5 (572-652)||(16971176-16971256)
chr5 (572-658)||(16802476-16802562)
chr5 (590-652)||(2953240-2953302)
chr5 (543-640)||(12913806-12913903)
chr5 (572-652)||(28818949-28819029)
chr5 (570-646)||(38134405-38134481)
chr5 (601-652)||(2093963-2094014)
chr5 (543-588)||(12913893-12913938)
chr5 (542-602)||(30117830-30117890)
chr5 (542-596)||(2953272-2953326)
chr5 (542-599)||(291176-291233)
chr5 (540-604)||(1638457-1638521)
chr5 (543-602)||(2356348-2356406)
chr5 (616-658)||(3899859-3899901)
chr5 (554-596)||(7009410-7009452)
chr5 (542-596)||(16971226-16971280)
chr5 (616-658)||(26662419-26662461)
chr5 (616-658)||(26934014-26934056)
chr5 (542-596)||(29699449-29699503)
chr5 (602-652)||(43225372-43225422)
chr5 (582-639)||(2935869-2935926)
chr5 (607-652)||(14167178-14167223)
chr5 (578-639)||(26662437-26662498)
chr5 (578-639)||(26934032-26934093)
chr5 (543-595)||(31147140-31147193)
chr5 (607-652)||(37325584-37325629)
chr5 (544-629)||(39031200-39031285)
[»] chr3 (24 HSPs)
chr3 (543-665)||(33689179-33689301)
chr3 (530-652)||(41752954-41753076)
chr3 (529-652)||(47492073-47492196)
chr3 (530-652)||(51046099-51046221)
chr3 (527-658)||(43139729-43139860)
chr3 (572-658)||(47677275-47677361)
chr3 (572-652)||(1801472-1801552)
chr3 (546-658)||(18321657-18321769)
chr3 (572-652)||(30476500-30476580)
chr3 (570-658)||(29031734-29031822)
chr3 (542-650)||(30734430-30734538)
chr3 (543-640)||(55223235-55223332)
chr3 (544-652)||(30580782-30580890)
chr3 (542-596)||(1801448-1801502)
chr3 (542-596)||(45103111-45103165)
chr3 (578-640)||(50524740-50524802)
chr3 (578-655)||(50550013-50550090)
chr3 (542-596)||(41753046-41753100)
chr3 (607-652)||(45103135-45103180)
chr3 (622-658)||(47677337-47677373)
chr3 (544-599)||(51046077-51046132)
chr3 (550-588)||(34060203-34060241)
chr3 (572-658)||(49418711-49418797)
chr3 (542-588)||(50524792-50524838)
[»] chr8 (24 HSPs)
chr8 (531-652)||(35440995-35441116)
chr8 (530-652)||(5033151-5033273)
chr8 (529-658)||(8243408-8243537)
chr8 (529-652)||(33841617-33841740)
chr8 (531-652)||(10086748-10086869)
chr8 (542-652)||(5667099-5667209)
chr8 (542-652)||(8796424-8796534)
chr8 (527-652)||(45191153-45191278)
chr8 (572-652)||(39850987-39851067)
chr8 (543-658)||(34229644-34229759)
chr8 (542-613)||(43844534-43844605)
chr8 (585-657)||(34541824-34541896)
chr8 (572-651)||(4958631-4958709)
chr8 (540-652)||(35031640-35031753)
chr8 (530-610)||(2581815-2581895)
chr8 (590-652)||(31159901-31159963)
chr8 (542-602)||(45191129-45191189)
chr8 (616-658)||(6296625-6296667)
chr8 (530-596)||(22649835-22649901)
chr8 (578-633)||(6296643-6296698)
chr8 (544-599)||(10086836-10086891)
chr8 (542-596)||(5033243-5033297)
chr8 (530-588)||(5667187-5667245)
chr8 (603-652)||(37618753-37618802)
[»] chr4 (31 HSPs)
chr4 (529-652)||(23444295-23444418)
chr4 (531-652)||(51265436-51265557)
chr4 (530-652)||(6271692-6271814)
chr4 (554-652)||(47661856-47661954)
chr4 (572-652)||(42375042-42375122)
chr4 (572-658)||(47404605-47404691)
chr4 (532-629)||(30861823-30861920)
chr4 (570-655)||(52028579-52028664)
chr4 (572-658)||(40789211-40789297)
chr4 (590-657)||(24006091-24006158)
chr4 (525-658)||(31430481-31430602)
chr4 (542-652)||(35682168-35682278)
chr4 (572-658)||(55090016-55090102)
chr4 (590-658)||(50384125-50384193)
chr4 (542-655)||(26186039-26186150)
chr4 (578-652)||(47762646-47762720)
chr4 (593-657)||(28693944-28694008)
chr4 (572-652)||(53954642-53954722)
chr4 (540-605)||(3862619-3862684)
chr4 (540-605)||(3871376-3871441)
chr4 (590-658)||(45591430-45591498)
chr4 (590-650)||(25818401-25818461)
chr4 (570-641)||(38714853-38714924)
chr4 (542-596)||(42375092-42375146)
chr4 (578-651)||(31532716-31532789)
chr4 (623-655)||(17285813-17285845)
chr4 (544-652)||(44379934-44380042)
chr4 (621-657)||(53954631-53954667)
chr4 (542-596)||(47661924-47661978)
chr4 (629-658)||(24006151-24006180)
chr4 (622-667)||(40789190-40789235)
[»] chr2 (27 HSPs)
chr2 (530-652)||(16514414-16514536)
chr2 (554-658)||(15011294-15011398)
chr2 (530-652)||(29508716-29508839)
chr2 (554-652)||(14470618-14470716)
chr2 (572-652)||(6217250-6217330)
chr2 (580-651)||(37961746-37961817)
chr2 (572-658)||(2828616-2828702)
chr2 (530-658)||(9173001-9173129)
chr2 (572-652)||(29925596-29925676)
chr2 (542-652)||(14229379-14229479)
chr2 (575-658)||(37762021-37762104)
chr2 (578-652)||(38933625-38933699)
chr2 (554-651)||(6721965-6722062)
chr2 (572-658)||(2893995-2894081)
chr2 (544-596)||(33018627-33018679)
chr2 (542-596)||(6217226-6217280)
chr2 (542-599)||(6722030-6722087)
chr2 (543-640)||(24115923-24116020)
chr2 (540-652)||(32545786-32545900)
chr2 (537-596)||(14229350-14229409)
chr2 (578-652)||(14892299-14892372)
chr2 (542-588)||(14892350-14892396)
chr2 (616-658)||(38933607-38933649)
chr2 (616-658)||(2828604-2828646)
chr2 (621-658)||(2893983-2894020)
chr2 (543-588)||(24116010-24116055)
chr2 (540-596)||(29508690-29508747)
[»] scaffold0161 (2 HSPs)
scaffold0161 (528-651)||(27247-27370)
scaffold0161 (542-588)||(27222-27268)
[»] chr6 (13 HSPs)
chr6 (527-658)||(551185-551316)
chr6 (543-650)||(17750906-17751012)
chr6 (576-652)||(12343136-12343212)
chr6 (540-637)||(24587461-24587558)
chr6 (572-658)||(10521869-10521955)
chr6 (579-657)||(2315325-2315403)
chr6 (529-596)||(24975741-24975808)
chr6 (570-652)||(13043487-13043569)
chr6 (578-652)||(24618627-24618701)
chr6 (616-658)||(24618677-24618719)
chr6 (616-658)||(31654325-31654367)
chr6 (543-602)||(24618604-24618663)
chr6 (572-619)||(31654337-31654384)
[»] scaffold0047 (1 HSPs)
scaffold0047 (572-658)||(63789-63875)
[»] scaffold0586 (2 HSPs)
scaffold0586 (543-641)||(7084-7181)
scaffold0586 (543-596)||(7050-7103)
[»] scaffold0016 (1 HSPs)
scaffold0016 (572-650)||(49731-49809)
[»] scaffold0481 (1 HSPs)
scaffold0481 (591-658)||(2907-2974)
[»] scaffold1033 (1 HSPs)
scaffold1033 (592-655)||(2265-2328)
[»] scaffold1029 (1 HSPs)
scaffold1029 (592-655)||(2265-2328)
[»] scaffold0536 (1 HSPs)
scaffold0536 (554-652)||(4918-5013)
[»] scaffold0180 (2 HSPs)
scaffold0180 (543-596)||(19125-19178)
scaffold0180 (593-646)||(19154-19207)


Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Complemental strand, 45038855 - 45038327
Alignment:
Q  1 gagttttgatttttgttacaacaaagattataacaacatcatttgtgaaagtggttatttgaaaaccgctgaactacttattgctaatcttgatcatact 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||||| ||||||||    
T  45038855 gagtcttgatttttgttacaacaaagattataacaacatcatttgtgaaagtggttatttgaaaaccaccgaactacttattgttgatcttaatcatact 45038756  T
Q  101 tgacacacttatactacctacatccttcatattaaacatgcaaaatgataacattacattagtannnnnnnnnnnataaacaaaatatgagtacaaattt 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||    
T  45038755 tgacacacttatactacttacatccttcatattaaacatgcaaaatgataacattacattagtatttttttttt-ataaacaaaatatgagtacaaattt 45038657  T
Q  201 tataactaaactgagatcacattttattttaggtactttgagacgatccgtatttgatataaagtctctcataagtttcaaaattatttttgactcattt 300  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  45038656 tataactaaaccgagatcacattttattttaggtactttgagacgatctgtatttgatataaagtctctcataagtttcaaaattatttttgactcatct 45038557  T
Q  301 tccagctgagcttataaaaagcatttcatcctcaaccagaaagcatgttgattgatcagcttatcaacaccaaacaacctaaaactattataattcgagt 400  Q
    || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45038556 tcgagctgagcttacaaaaagcatttcatcctcaaccagaaagcatgttgattgatcagcttatcaacaccaaacaacctaaaactattataattcgagt 45038457  T
Q  401 atgatgagataattgaaaatttcttctaccactcgaaaaagaacaatttcaaacacaatgttaaacggatttgaatggtctgcctcaaggtgccacagta 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45038456 atgatgagataattgaaaatttcttctaccactcgaaaaagaacaatttcaaacacaatgttaaacggatttgaatggtctgcctcaaggtgccagagta 45038357  T
Q  501 gatgaatacatacactgccgcaatagaagg 530  Q
    ||||||||||||||||||||||||||||||    
T  45038356 gatgaatacatacactgccgcaatagaagg 45038327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 659 - 874
Target Start/End: Complemental strand, 45038330 - 45038122
Alignment:
Q  659 aaggtcattatttaatttgccaataattaaaacgacaatgttttctttttcgataatataaaagacatttaatttctttgctaagcaacaatccaccctt 758  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||    
T  45038330 aaggtcattatttaatttgccagtaattaaaacgacaatgttttctttttcgataatataaaagacattt-----ctttgctaagcaacaatccaccctt 45038236  T
Q  759 caaaattgaccgagatcaatatagacatagaaaacttcccacattttcacatgaaatagacaagagaccctttacacaataaaattccatcgcatttgca 858  Q
    | |||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45038235 ctaaattgaccga--tcaatatagacatagaaaacttcccacaatttcacatgaaatagacaagagaccctttacacaataaaattccatcgcatttgca 45038138  T
Q  859 tttcatgattcacatt 874  Q
    ||||||||||||||||    
T  45038137 tttcatgattcacatt 45038122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 528 - 652
Target Start/End: Original strand, 11016857 - 11016981
Alignment:
Q  528 agggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgt 627  Q
    ||||||||||| | |||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| || |||||||||||||||||||  ||||||    
T  11016857 agggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgt 11016956  T
Q  628 gacattgtgattggtcaatgtcacc 652  Q
    |||||||||||||||||||||||||    
T  11016957 gacattgtgattggtcaatgtcacc 11016981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 530 - 658
Target Start/End: Complemental strand, 34854843 - 34854715
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    ||||||||| | |||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||     
T  34854843 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggtcaatcacaatgccacaatgtttgtgtttctatctctttcacaagcattgtgg 34854744  T
Q  630 cattgtgattggtcaatgtcacccaactc 658  Q
    |||||||||||| |||||||||| |||||    
T  34854743 cattgtgattggccaatgtcaccaaactc 34854715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 530 - 658
Target Start/End: Complemental strand, 41018376 - 41018248
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    ||||||||| | |||||||||||||||| |||||||||| | ||||  ||||||||||||||||||| |||||||||||||||||||||| |||||| ||    
T  41018376 ggaaaatacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttatgtttctctctctttcacaagcattggga 41018277  T
Q  630 cattgtgattggtcaatgtcacccaactc 658  Q
    |||||||||||| ||||||||||||||||    
T  41018276 cattgtgattggccaatgtcacccaactc 41018248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 530 - 652
Target Start/End: Original strand, 38975795 - 38975917
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    ||||||||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||     
T  38975795 ggaaaatacttgggtgacatagagttgggtgacattggtaacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 38975894  T
Q  630 cattgtgattggtcaatgtcacc 652  Q
    |||| | |||| |||||||||||    
T  38975895 cattataattgatcaatgtcacc 38975917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 532 - 652
Target Start/End: Original strand, 4290537 - 4290657
Alignment:
Q  532 aaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgaca 631  Q
    ||||||| | |||||||||||||||| ||| |||||| ||||||||||||||||||||||||||| |  ||||||||||||||||||| | |||||||||    
T  4290537 aaaatacttgggtgacatagagttgggtgatattggtgatattggtcaatcacaatgccacaatgctcgtgtttctctctctttcacaagaattgtgaca 4290636  T
Q  632 ttgtgattggtcaatgtcacc 652  Q
    |||||||||| ||||||||||    
T  4290637 ttgtgattggccaatgtcacc 4290657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 530 - 652
Target Start/End: Original strand, 15027532 - 15027654
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    ||||||||| | ||| |||||||||||  |||||||||| | ||||  |||||||||| ||||||||||| ||||||||||||||||||| |||||||||    
T  15027532 ggaaaatacttgggtaacatagagttgtttgacattggtgacattgaccaatcacaataccacaatgtttgtgtttctctctctttcacaagcattgtga 15027631  T
Q  630 cattgtgattggtcaatgtcacc 652  Q
    |||||||||||||||||||||||    
T  15027632 cattgtgattggtcaatgtcacc 15027654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 539 - 658
Target Start/End: Complemental strand, 27028932 - 27028813
Alignment:
Q  539 ataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgat 638  Q
    |||||||||||||| |||| |||  ||||| | ||||||||||||||||| |||||||||| ||||||||||||||||| | ||||||||||||||||||    
T  27028932 ataggtgacatagacttgggtgatgttggtgacattggtcaatcacaatgtcacaatgtttgtgtttctctctctttcagaagcattgtgacattgtgat 27028833  T
Q  639 tggtcaatgtcacccaactc 658  Q
    ||  |||||| |||||||||    
T  27028832 tgtccaatgttacccaactc 27028813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 572 - 652
Target Start/End: Original strand, 48000769 - 48000849
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  48000769 attggccaatcacaatgccacaatgtttgtgtttctctctctttcacagacattgtggcattgtgattggtcaatgtcacc 48000849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 572 - 655
Target Start/End: Complemental strand, 7672017 - 7671934
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaa 655  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||  ||||||||||||    
T  7672017 attggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggctaatgtcacccaa 7671934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 527 - 658
Target Start/End: Complemental strand, 29053456 - 29053334
Alignment:
Q  527 aagggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattg 626  Q
    |||||||||||| | |||||||||||||||| |||||||||          |||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  29053456 aagggaaaatacttgggtgacatagagttgggtgacattggc---------caatcacaatgccacaatgtttgtgtttctctctctttcacaagcattg 29053366  T
Q  627 tgacattgtgattggtcaatgtcacccaactc 658  Q
     | |||||||||||| |||||||||| |||||    
T  29053365 aggcattgtgattggccaatgtcaccaaactc 29053334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 532 - 658
Target Start/End: Complemental strand, 45231996 - 45231874
Alignment:
Q  532 aaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgaca 631  Q
    ||||||| | |||||||||||||||| |||||||||| | ||||| |||||||||||  |||||| || |||||||||||||||||    ||  ||| ||    
T  45231996 aaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgttacaatgcttttgtttctctctctttca----caaagtggca 45231901  T
Q  632 ttgtgattggtcaatgtcacccaactc 658  Q
    |||||||||||||||||||||||||||    
T  45231900 ttgtgattggtcaatgtcacccaactc 45231874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 578 - 652
Target Start/End: Original strand, 42628333 - 42628407
Alignment:
Q  578 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| |||| |||||    
T  42628333 caatcacaatgccacaatgcttatgtttctctctctttcacaagcattgggacattgtgattggccaatatcacc 42628407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 559 - 625
Target Start/End: Complemental strand, 22764819 - 22764753
Alignment:
Q  559 tgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcatt 625  Q
    |||||||||| ||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||||    
T  22764819 tgacattggtgatattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcatt 22764753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 572 - 658
Target Start/End: Original strand, 4649352 - 4649440
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctc--tctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||||||||||||||||| |||||| || ||||||||  ||||||||||| |||| |||||||||||||||  |||||||||| |||||    
T  4649352 attggtcaatcacaatgctacaatgcttgtgtttctctctctctttcacaagcatcgtgacattgtgattgaccaatgtcaccaaactc 4649440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 529 - 596
Target Start/End: Original strand, 48000683 - 48000750
Alignment:
Q  529 gggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    |||||||||| | |||||||| ||||||| |||||||||| | |||| ||||||||||||||||||||    
T  48000683 gggaaaatacttgggtgacattgagttgggtgacattggtgacattgatcaatcacaatgccacaatg 48000750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 543 - 628
Target Start/End: Complemental strand, 30217588 - 30217504
Alignment:
Q  543 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtg 628  Q
    ||||||||||||| | |||||||| | | ||| | ||||||||||  || ||||||||||||||||||||||||||| ||||||||    
T  30217588 gtgacatagagtttg-tgacattgatgacattcgccaatcacaatatcaaaatgtttatgtttctctctctttcacaagcattgtg 30217504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 603 - 652
Target Start/End: Complemental strand, 48000769 - 48000720
Alignment:
Q  603 tttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||||||    
T  48000769 tttctctctctttcacaagcattgtggcattgtgattgatcaatgtcacc 48000720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 572 - 658
Target Start/End: Original strand, 10419490 - 10419576
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||||||||||| ||||  |||||  || ||||||||||||||||||| |  |||||||||||||||  | |||||||||| |||||    
T  10419490 attggtcaatcataatgttacaatacttgtgtttctctctctttcacaagttttgtgacattgtgatcagccaatgtcaccaaactc 10419576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 588
Target Start/End: Complemental strand, 41945991 - 41945945
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatg 588  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||    
T  41945991 ggtgacataaagttgagtgacattggtaatattggtcaatcacaatg 41945945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 588
Target Start/End: Complemental strand, 42628431 - 42628385
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatg 588  Q
    |||||||||||||||| |||||||||| ||||||| |||||||||||    
T  42628431 ggtgacatagagttgggtgacattggtgatattggccaatcacaatg 42628385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 542 - 599
Target Start/End: Complemental strand, 11017005 - 11016948
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgttt 599  Q
    |||||||||||||||| |||||||||| | ||||  ||||||||||| ||||||||||    
T  11017005 ggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgttt 11016948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 621 - 658
Target Start/End: Complemental strand, 42628352 - 42628315
Alignment:
Q  621 gcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||||||| |||||||||||||||||||||||||||||    
T  42628352 gcattgtggcattgtgattggtcaatgtcacccaactc 42628315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 544 - 640
Target Start/End: Original strand, 41945859 - 41945955
Alignment:
Q  544 tgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattg 640  Q
    ||||||||| |||  |||||||| | | ||| |||||||| |||| || |||||||  |||| | ||||||||||| ||||||| ||||||||||||    
T  41945859 tgacatagaattgagtgacattgatgacattagtcaatcataatgtcataatgtttgcgtttttttctctttcacaagcattgtaacattgtgattg 41945955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 597
Target Start/End: Complemental strand, 48000869 - 48000818
Alignment:
Q  546 acatagagttggatgacattggtaatattggtcaatcacaatgccacaatgt 597  Q
    |||||||||||| |||||||||| | ||||  ||||||||||||||||||||    
T  48000869 acatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgt 48000818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 595
Target Start/End: Complemental strand, 4290681 - 4290628
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaat 595  Q
    ||||||||| |||||| |||||||||| | ||||| ||||||||||| ||||||    
T  4290681 ggtgacatacagttgggtgacattggtgacattggccaatcacaatgtcacaat 4290628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 607
Target Start/End: Original strand, 27028730 - 27028795
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttct 607  Q
    ||||||||| |||||  |||||||||| | ||||| ||||||||||| ||||||| || |||||||    
T  27028730 ggtgacatatagttgagtgacattggtgacattggacaatcacaatgtcacaatgcttgtgtttct 27028795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 8e-42; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 529 - 652
Target Start/End: Original strand, 5995358 - 5995481
Alignment:
Q  529 gggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtg 628  Q
    |||||||||| | |||||||||||||| |||||||||||||| ||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||    
T  5995358 gggaaaatacttgggtgacatagagtttgatgacattggtaacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 5995457  T
Q  629 acattgtgattggtcaatgtcacc 652  Q
     |||||||||||||||||||||||    
T  5995458 gcattgtgattggtcaatgtcacc 5995481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 530 - 652
Target Start/End: Complemental strand, 29179745 - 29179623
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    ||||||||| | |||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||| |||||||||    
T  29179745 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 29179646  T
Q  630 cattgtgattggtcaatgtcacc 652  Q
    ||||||||||||||| |||||||    
T  29179645 cattgtgattggtcagtgtcacc 29179623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 530 - 652
Target Start/End: Complemental strand, 48994065 - 48993943
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    ||||||||| | |||||||||||||||| |||||||||| | ||||  ||||||||||||||||||| || ||||||||||||||||||| |||||||||    
T  48994065 ggaaaatacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 48993966  T
Q  630 cattgtgattggtcaatgtcacc 652  Q
    |||||||||||||||||||||||    
T  48993965 cattgtgattggtcaatgtcacc 48993943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 530 - 658
Target Start/End: Original strand, 37155036 - 37155164
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    ||||||||| | |||||||||||||| | |||||||||| | ||||| ||||||||||| ||||||| || ||||||||||||||||||| | |||||||    
T  37155036 ggaaaatacttgggtgacatagagtttggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagtattgtga 37155135  T
Q  630 cattgtgattggtcaatgtcacccaactc 658  Q
    |||||||||||| ||||||||||||||||    
T  37155136 cattgtgattggccaatgtcacccaactc 37155164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 530 - 652
Target Start/End: Original strand, 48498405 - 48498527
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    ||||||||| | |||||||||||||||| ||||||| || | |||||||||||| ||| ||||||||||| ||||||||||||||||||| |||| || |    
T  48498405 ggaaaatacttgggtgacatagagttgggtgacatttgtgacattggtcaatcataataccacaatgtttgtgtttctctctctttcacaagcatggtaa 48498504  T
Q  630 cattgtgattggtcaatgtcacc 652  Q
    |||||||||||||||||||||||    
T  48498505 cattgtgattggtcaatgtcacc 48498527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 572 - 658
Target Start/End: Original strand, 34062241 - 34062327
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  34062241 attggccaatcacaatgccacaatgcttatgtttctctctctttcacaaacattgtgacattgtgattggtcaatgtcacccaactc 34062327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 543 - 658
Target Start/End: Original strand, 9157313 - 9157428
Alignment:
Q  543 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggt 642  Q
    ||||||||||||||| |||||||||||| ||||  ||||||||||| ||||||| || |||||||||||||||| || ||||||||| |||||||||| |    
T  9157313 gtgacatagagttgggtgacattggtaacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttctcaagcattgtgatattgtgattgat 9157412  T
Q  643 caatgtcacccaactc 658  Q
    |||||||| |||||||    
T  9157413 caatgtcaaccaactc 9157428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 542 - 655
Target Start/End: Complemental strand, 44706920 - 44706806
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgaca-ttgtgattg 640  Q
    |||||||||||||||| |||||||||| | ||||| ||||||||||||| ||||| || ||||||||||||||||||| |||||||| || |||||||||    
T  44706920 ggtgacatagagttgggtgacattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtggcatttgtgattg 44706821  T
Q  641 gtcaatgtcacccaa 655  Q
    | |||||||||||||    
T  44706820 gccaatgtcacccaa 44706806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 542 - 652
Target Start/End: Complemental strand, 32540884 - 32540774
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 641  Q
    ||||||||||| ||||||||||||||| | ||||  |||||||||||  |||||| || ||||||||||||||||||| |||||||||||||||||||||    
T  32540884 ggtgacatagaattggatgacattggtgacattgaccaatcacaatgttacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgg 32540785  T
Q  642 tcaatgtcacc 652  Q
     ||||| ||||    
T  32540784 ccaatgccacc 32540774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 572 - 652
Target Start/End: Original strand, 29371400 - 29371480
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||| ||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  29371400 attggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatatcacc 29371480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 551 - 658
Target Start/End: Original strand, 4609007 - 4609114
Alignment:
Q  551 gagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtca 650  Q
    ||||||| |||||| ||| | ||||  | ||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  4609007 gagttgggtgacatcggtgacattgacccatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattgaccaatgtca 4609106  T
Q  651 cccaactc 658  Q
    ||||||||    
T  4609107 cccaactc 4609114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 542 - 640
Target Start/End: Complemental strand, 1091680 - 1091582
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattg 640  Q
    |||||||||||||||| ||| |||||| |  |||  ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  1091680 ggtgacatagagttgggtgatattggtgactttgaccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattg 1091582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 542 - 651
Target Start/End: Complemental strand, 17127700 - 17127591
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 641  Q
    ||||| |||||||| | ||||||| || | ||||  |||||| |||| ||||||| || ||||||||||||||||||| |||||||||||||||||||||    
T  17127700 ggtgatatagagttaggtgacattagtgacattgaccaatcaaaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgg 17127601  T
Q  642 tcaatgtcac 651  Q
    ||||||||||    
T  17127600 tcaatgtcac 17127591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 572 - 652
Target Start/End: Complemental strand, 741608 - 741528
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||||| ||||||||| ||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  741608 attggtcgatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgggcaatgtcacc 741528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 578 - 652
Target Start/End: Complemental strand, 8337951 - 8337877
Alignment:
Q  578 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    |||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||  ||||||||||    
T  8337951 caatcacaatgccacaatgtttgtgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcacc 8337877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 578 - 658
Target Start/End: Complemental strand, 46334046 - 46333966
Alignment:
Q  578 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||||||||| ||||||| || ||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||||||    
T  46334046 caatcacaatgtcacaatgcttgtgtttttctctctttcacaagcattgtgacattgtgattggccaatgtcatccaactc 46333966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 540 - 658
Target Start/End: Complemental strand, 19711316 - 19711200
Alignment:
Q  540 taggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgatt 639  Q
    ||||||| ||| |||| | |||||||||||| |||||   || |||||| ||||||  ||||||||||||||  |||||| ||||||| |||||||||||    
T  19711316 taggtgatataaagtttggtgacattggtaacattggctgattacaatgtcacaattcttatgtttctctct--ttcacatgcattgtaacattgtgatt 19711219  T
Q  640 ggtcaatgtcacccaactc 658  Q
    |||||||||||||||||||    
T  19711218 ggtcaatgtcacccaactc 19711200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 601 - 667
Target Start/End: Complemental strand, 1819566 - 1819500
Alignment:
Q  601 tgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactcaaggtcatt 667  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | ||||||    
T  1819566 tgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcacccaactctatgtcatt 1819500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 547 - 649
Target Start/End: Original strand, 45728294 - 45728396
Alignment:
Q  547 catagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaat 646  Q
    ||||||||||| ||| |||||| ||||||  ||||||||||  ||||||| || ||||||||||||||||||| ||||| ||||||||||||||  ||||    
T  45728294 catagagttgggtgatattggtgatattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaagcattatgacattgtgattgaccaat 45728393  T
Q  647 gtc 649  Q
    |||    
T  45728394 gtc 45728396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 578 - 658
Target Start/End: Original strand, 47303433 - 47303513
Alignment:
Q  578 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||||||||| || ||||||| |||||||||||||||||||  |||||||||||||||||||  |||||||||| |||||    
T  47303433 caatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcacctaactc 47303513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 542 - 629
Target Start/End: Complemental strand, 36290543 - 36290456
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    |||||||||||||||| ||||||||||   ||||  ||||||||||| |||||| ||| ||||||||||||||||||| |||||||||    
T  36290543 ggtgacatagagttgggtgacattggtggcattgaccaatcacaatgtcacaatatttgtgtttctctctctttcacaagcattgtga 36290456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 529 - 604
Target Start/End: Original strand, 46931986 - 46932061
Alignment:
Q  529 gggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtt 604  Q
    |||||||||| | |||||||||||||||| |||||||||| | ||||| |||||||||||||||||||||| ||||    
T  46931986 gggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt 46932061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 570 - 658
Target Start/End: Complemental strand, 38674611 - 38674525
Alignment:
Q  570 atattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||||| |||||| |||| ||||||| || |||||||||||  |||||| ||||||||||||||||||||| |||| |||||||||||    
T  38674611 atattggccaatcataatgtcacaatgcttgtgtttctctct--ttcacaagcattgtgacattgtgattggccaatatcacccaactc 38674525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 572 - 652
Target Start/End: Original strand, 15220843 - 15220923
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||||||||||| ||  ||||||| || ||||||||||||||||||| ||||||||| ||||||||||| |||| |||||    
T  15220843 attggtcaatcacgatctcacaatgcttgtgtttctctctctttcacaagcattgtgagattgtgattggccaatatcacc 15220923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 590 - 658
Target Start/End: Complemental strand, 28928867 - 28928799
Alignment:
Q  590 cacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||| ||||| ||||||||||||||||||| ||| ||||||||||||||||| |||||||||| |||||    
T  28928867 cacagtgtttgtgtttctctctctttcacaagcactgtgacattgtgattggccaatgtcaccaaactc 28928799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 572 - 652
Target Start/End: Original strand, 33219605 - 33219685
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    |||| ||||||||||||  |||||| || ||||| ||||||||||||| ||||| |||||||||||||| |||||||||||    
T  33219605 attgatcaatcacaatgttacaatgcttgtgtttttctctctttcacaagcattatgacattgtgattgatcaatgtcacc 33219685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 572 - 652
Target Start/End: Complemental strand, 49445017 - 49444939
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||| ||||||||||||||||||| || ||||||||||||  ||||| ||||||| |||||||||||| || ||||||||    
T  49445017 attggccaatcacaatgccacaatgcttgtgtttctctctc--tcacaagcattgtaacattgtgattgatcgatgtcacc 49444939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 572 - 658
Target Start/End: Complemental strand, 5694995 - 5694910
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||||||||| |||||| |||||| ||| ||||||||||||||||||| ||||| | | ||||||||||  |||||||||| |||||    
T  5694995 attggtcaattacaatgtcacaatatttgtgtttctctctctttcacaagcatt-taatattgtgattgaccaatgtcaccaaactc 5694910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 596
Target Start/End: Complemental strand, 5995505 - 5995451
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    ||||||||||||||||||||||||||| | ||||  |||||||||||||||||||    
T  5995505 ggtgacatagagttggatgacattggtgacattgaccaatcacaatgccacaatg 5995451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 543 - 616
Target Start/End: Original strand, 21630045 - 21630118
Alignment:
Q  543 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttc 616  Q
    |||||||| |||||| |||||||||| | ||||  ||||||||||| ||||||| || ||||||||||||||||    
T  21630045 gtgacataaagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttc 21630118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 596
Target Start/End: Complemental strand, 15220947 - 15220893
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    |||||||||||||||| |||||||||| ||||||| ||||||||||  |||||||    
T  15220947 ggtgacatagagttgggtgacattggtgatattggccaatcacaatctcacaatg 15220893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 616 - 658
Target Start/End: Original strand, 46334022 - 46334064
Alignment:
Q  616 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||| |||||||||||||||||||||||||||||| |||||||    
T  46334022 cacaagcattgtgacattgtgattggtcaatgtcatccaactc 46334064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 572 - 658
Target Start/End: Complemental strand, 48605053 - 48604967
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||| |||| | |||| ||||||| ||  ||||||||||||||||||   ||||||||||||||||||  |||||||||| |||||    
T  48605053 attggccaattataatgtcacaatgcttgcgtttctctctctttcacaaatattgtgacattgtgattgaccaatgtcacctaactc 48604967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 621 - 658
Target Start/End: Complemental strand, 48823942 - 48823905
Alignment:
Q  621 gcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  48823942 gcattgtgacattgtgattggccaatgtcacccaactc 48823905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 622 - 658
Target Start/End: Original strand, 8337933 - 8337969
Alignment:
Q  622 cattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||||| |||||||||||||||||||||||||||||    
T  8337933 cattgtggcattgtgattggtcaatgtcacccaactc 8337969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 616 - 652
Target Start/End: Complemental strand, 21630104 - 21630068
Alignment:
Q  616 cacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    |||| ||||||||||||||||||||||||||||||||    
T  21630104 cacaagcattgtgacattgtgattggtcaatgtcacc 21630068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 616 - 652
Target Start/End: Complemental strand, 28395699 - 28395663
Alignment:
Q  616 cacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    |||| ||||||||||||||||||||||||||||||||    
T  28395699 cacaagcattgtgacattgtgattggtcaatgtcacc 28395663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 542 - 598
Target Start/End: Complemental strand, 46932117 - 46932062
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtt 598  Q
    |||||||||||||||| |||||||||| | ||||  |||||||||||||||||||||    
T  46932117 ggtgacatagagttgg-tgacattggtgacattgaccaatcacaatgccacaatgtt 46932062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 546 - 588
Target Start/End: Complemental strand, 33219705 - 33219663
Alignment:
Q  546 acatagagttggatgacattggtaatattggtcaatcacaatg 588  Q
    ||||||||||||||||||||||| | |||| ||||||||||||    
T  33219705 acatagagttggatgacattggtgacattgatcaatcacaatg 33219663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 542 - 596
Target Start/End: Original strand, 48993919 - 48993973
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    |||||||||||||||| |||||||||| | ||||  ||||||||||| |||||||    
T  48993919 ggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatg 48993973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 616 - 658
Target Start/End: Original strand, 49444987 - 49445029
Alignment:
Q  616 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||| |||||||| |||||||||||| ||||||||||||||||    
T  49444987 cacaagcattgtggcattgtgattggccaatgtcacccaactc 49445029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 590 - 619
Target Start/End: Complemental strand, 7788336 - 7788307
Alignment:
Q  590 cacaatgtttatgtttctctctctttcaca 619  Q
    ||||||||||||||||||||||||||||||    
T  7788336 cacaatgtttatgtttctctctctttcaca 7788307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 611
Target Start/End: Original strand, 28395643 - 28395708
Alignment:
Q  546 acatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctct 611  Q
    |||||||||||  |||||||||| | ||||  ||||||||||| ||||||| || |||||||||||    
T  28395643 acatagagttgagtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctct 28395708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 658
Target Start/End: Complemental strand, 34062266 - 34062229
Alignment:
Q  621 gcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  34062266 gcattgtggcattgtgattggccaatgtcacccaactc 34062229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 3e-41; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 530 - 652
Target Start/End: Original strand, 19655148 - 19655270
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    ||||||||| | |||||||||||||||| |||||||||| | ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  19655148 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtga 19655247  T
Q  630 cattgtgattggtcaatgtcacc 652  Q
    |||||||||||| ||||||||||    
T  19655248 cattgtgattggacaatgtcacc 19655270  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 529 - 658
Target Start/End: Original strand, 19598321 - 19598449
Alignment:
Q  529 gggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtg 628  Q
    |||||||||| | |||||||||||||||| | |||||||| | |||||||||||||||| |||||||| || ||||||||||||||||||| ||||| ||    
T  19598321 gggaaaatacttgggtgacatagagttgggtaacattggtgacattggtcaatcacaataccacaatgcttgtgtttctctctctttcacaagcatt-tg 19598419  T
Q  629 acattgtgattggtcaatgtcacccaactc 658  Q
    ||||| |||||||| |||||||||||||||    
T  19598420 acattatgattggttaatgtcacccaactc 19598449  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 544 - 652
Target Start/End: Complemental strand, 30117962 - 30117854
Alignment:
Q  544 tgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtc 643  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||| || ||||||||||| ||||| |  ||||||||||||||||||||||    
T  30117962 tgacatagagttggatgacattggtgatattggtcaatcataatgccacaatgcttgtgtttctctctttttcataaacattgtgacattgtgattggtc 30117863  T
Q  644 aatgtcacc 652  Q
    ||| |||||    
T  30117862 aatatcacc 30117854  T

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Target: chr5; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 548 - 658
Target Start/End: Original strand, 16439146 - 16439256
Alignment:
Q  548 atagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatg 647  Q
    |||||||||| | | |||||| | ||||||||||||||||| ||||||| || ||||||||||||||||||| |||||||||||||||||||| ||||||    
T  16439146 atagagttgggtaatattggtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatg 16439245  T
Q  648 tcacccaactc 658  Q
    |||||||||||    
T  16439246 tcacccaactc 16439256  T

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Target: chr5; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 546 - 658
Target Start/End: Complemental strand, 3180191 - 3180080
Alignment:
Q  546 acatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaa 645  Q
    |||||||||||| | |||||||| | ||||||||||||||||||||||||| || |||||||||||||||||||  |||||||||||| |||||| ||||    
T  3180191 acatagagttgg-taacattggtgacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtgacattatgattgatcaa 3180093  T
Q  646 tgtcacccaactc 658  Q
    |||||||||||||    
T  3180092 tgtcacccaactc 3180080  T

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Target: chr5; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 530 - 652
Target Start/End: Original strand, 291087 - 291209
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    ||||||||| |  ||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| || | ||||| |||||||||||  ||||||||    
T  291087 ggaaaatacttgagtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtatttctttctctttcacaaacattgtga 291186  T
Q  630 cattgtgattggtcaatgtcacc 652  Q
    ||||||||||| |||||||||||    
T  291187 cattgtgattgatcaatgtcacc 291209  T

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Target: chr5; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 554 - 652
Target Start/End: Original strand, 29699381 - 29699479
Alignment:
Q  554 ttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    |||| |||||||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  29699381 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 29699479  T

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Target: chr5; HSP #8
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 572 - 652
Target Start/End: Original strand, 3899871 - 3899951
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3899871 attggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcacc 3899951  T

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Target: chr5; HSP #9
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 572 - 652
Target Start/End: Original strand, 16971176 - 16971256
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16971176 attggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcacc 16971256  T

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Target: chr5; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 572 - 658
Target Start/End: Original strand, 16802476 - 16802562
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||| |||||||||||  ||||| ||| ||||||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||||    
T  16802476 attggccaatcacaatgtaacaatatttgtgtttctctctcttttacaagcattgtgacattctgattggtcaatgtcactcaactc 16802562  T

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Target: chr5; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 590 - 652
Target Start/End: Original strand, 2953240 - 2953302
Alignment:
Q  590 cacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  2953240 cacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 2953302  T

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Target: chr5; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 543 - 640
Target Start/End: Original strand, 12913806 - 12913903
Alignment:
Q  543 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattg 640  Q
    |||||||| |||||  |||||||||| | ||||| ||||||||||| ||||||  || ||| ||||||||||||||| ||||| ||||||||||||||    
T  12913806 gtgacatatagttgagtgacattggtgacattggccaatcacaatgtcacaattcttgtgtatctctctctttcacaagcattatgacattgtgattg 12913903  T

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Target: chr5; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 572 - 652
Target Start/End: Original strand, 28818949 - 28819029
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||||||||||||||| ||||||  || | ||||||||||||||||| ||||||||||||| ||||||  ||||||||||    
T  28818949 attggtcaatcacaatgtcacaatacttgtatttctctctctttcacaagcattgtgacattatgattgaccaatgtcacc 28819029  T

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Target: chr5; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 570 - 646
Target Start/End: Complemental strand, 38134481 - 38134405
Alignment:
Q  570 atattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaat 646  Q
    ||||||| ||||||||||| ||||||| || ||||||| ||||||||||  ||||||||||||||||||||| ||||    
T  38134481 atattggccaatcacaatgtcacaatgcttgtgtttctttctctttcactagcattgtgacattgtgattggccaat 38134405  T

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Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 601 - 652
Target Start/End: Complemental strand, 2094014 - 2093963
Alignment:
Q  601 tgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||||||||||||||||| ||||| |||||||||||||| |||||||||||    
T  2094014 tgtttctctctctttcacaagcattatgacattgtgattgatcaatgtcacc 2093963  T

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Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 543 - 588
Target Start/End: Complemental strand, 12913938 - 12913893
Alignment:
Q  543 gtgacatagagttggatgacattggtaatattggtcaatcacaatg 588  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||    
T  12913938 gtgacatagagttgggtgacattggtgatattggtcaatcacaatg 12913893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 542 - 602
Target Start/End: Original strand, 30117830 - 30117890
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatg 602  Q
    ||||| |||||||||| |||||||||| ||||||  ||||||||||| |||||||||||||    
T  30117830 ggtgatatagagttgggtgacattggtgatattgaccaatcacaatgtcacaatgtttatg 30117890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 596
Target Start/End: Complemental strand, 2953326 - 2953272
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    |||||||||||||||| |||||||||| | ||||| ||||||||||| |||||||    
T  2953326 ggtgacatagagttgggtgacattggtgacattggccaatcacaatgtcacaatg 2953272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 542 - 599
Target Start/End: Complemental strand, 291233 - 291176
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgttt 599  Q
    ||||| |||||||||| |||||||||| | |||| |||||||||||| ||||||||||    
T  291233 ggtgatatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgttt 291176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 540 - 604
Target Start/End: Original strand, 1638457 - 1638521
Alignment:
Q  540 taggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtt 604  Q
    ||||||| |||||||||| ||| ||| || ||||||| ||||||||||| |||||||||| ||||    
T  1638457 taggtgatatagagttgggtgatatttgtgatattggccaatcacaatgtcacaatgtttgtgtt 1638521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 602
Target Start/End: Complemental strand, 2356406 - 2356348
Alignment:
Q  543 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatg 602  Q
    |||||||||||||||||||||||||| | ||||| ||||||| ||| ||||||| |||||    
T  2356406 gtgacatagagttggatgacattggtgacattggccaatcac-atgtcacaatgcttatg 2356348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 616 - 658
Target Start/End: Complemental strand, 3899901 - 3899859
Alignment:
Q  616 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||| |||||||| |||||||||||| ||||||||||||||||    
T  3899901 cacaagcattgtggcattgtgattggccaatgtcacccaactc 3899859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 554 - 596
Target Start/End: Complemental strand, 7009452 - 7009410
Alignment:
Q  554 ttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    ||||||||||||||| ||||||||||||||||||  |||||||    
T  7009452 ttggatgacattggtgatattggtcaatcacaatatcacaatg 7009410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 542 - 596
Target Start/End: Complemental strand, 16971280 - 16971226
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    |||||||||||||||| |||||||||| | ||||  ||||||||||| |||||||    
T  16971280 ggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatg 16971226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 616 - 658
Target Start/End: Complemental strand, 26662461 - 26662419
Alignment:
Q  616 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||| ||| ||| ||||||||||||||||||||||||||||||    
T  26662461 cacaagcaatgtaacattgtgattggtcaatgtcacccaactc 26662419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 616 - 658
Target Start/End: Complemental strand, 26934056 - 26934014
Alignment:
Q  616 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||| ||| ||| ||||||||||||||||||||||||||||||    
T  26934056 cacaagcaatgtaacattgtgattggtcaatgtcacccaactc 26934014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 542 - 596
Target Start/End: Complemental strand, 29699503 - 29699449
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    |||||||||||||||| ||| |||||| | ||||| ||||||||||| |||||||    
T  29699503 ggtgacatagagttgggtgatattggtgacattggccaatcacaatgtcacaatg 29699449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 602 - 652
Target Start/End: Complemental strand, 43225422 - 43225372
Alignment:
Q  602 gtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    |||||||| |||||||| |||||| ||||||| |||||||||||| |||||    
T  43225422 gtttctctttctttcacgggcattatgacattctgattggtcaatatcacc 43225372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 582 - 639
Target Start/End: Complemental strand, 2935926 - 2935869
Alignment:
Q  582 cacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgatt 639  Q
    ||||||| |||||||||| ||||||||| ||||| |||  |||| |||||||||||||    
T  2935926 cacaatgtcacaatgtttgtgtttctctatcttttacaaacattatgacattgtgatt 2935869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 652
Target Start/End: Complemental strand, 14167223 - 14167178
Alignment:
Q  607 tctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||||||||||| | ||||||||||||||||| ||||| ||||||    
T  14167223 tctctctttcacaaggattgtgacattgtgattcgtcaaagtcacc 14167178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 639
Target Start/End: Original strand, 26662437 - 26662498
Alignment:
Q  578 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgatt 639  Q
    |||||||||||  ||| || || ||||||||||| ||||||| | |||||||||||||||||    
T  26662437 caatcacaatgttacattgcttgtgtttctctctttttcacaagtattgtgacattgtgatt 26662498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 639
Target Start/End: Original strand, 26934032 - 26934093
Alignment:
Q  578 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgatt 639  Q
    |||||||||||  ||| || || ||||||||||| ||||||| | |||||||||||||||||    
T  26934032 caatcacaatgttacattgcttgtgtttctctctttttcacaagtattgtgacattgtgatt 26934093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 595
Target Start/End: Original strand, 31147140 - 31147193
Alignment:
Q  543 gtgacatagagttggatgacattggtaatattggtcaatcac-aatgccacaat 595  Q
    ||||||||||||||  |||||||| ||||||||| ||||||| |||||||||||    
T  31147140 gtgacatagagttgagtgacattgataatattggccaatcacaaatgccacaat 31147193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 652
Target Start/End: Complemental strand, 37325629 - 37325584
Alignment:
Q  607 tctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||||||||||| | ||||||||||||||||| ||||||| ||||    
T  37325629 tctctctttcacaaggattgtgacattgtgattcgtcaatgccacc 37325584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 629
Target Start/End: Complemental strand, 39031285 - 39031200
Alignment:
Q  544 tgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    ||||||||||| || |||||||||| | | || |||||||||||  || ||| ||| | ||||||| ||||||||| |||||||||    
T  39031285 tgacatagagtggggtgacattggtgacactgatcaatcacaatatcataatatttgtatttctctttctttcacaagcattgtga 39031200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 3e-41; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 543 - 665
Target Start/End: Original strand, 33689179 - 33689301
Alignment:
Q  543 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggt 642  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| ||||||| || ||||||||||||||||||| |||||||||||||||||||||     
T  33689179 gtgacatagagttgggtgacattgatgatattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggc 33689278  T
Q  643 caatgtcacccaactcaaggtca 665  Q
    |||||||||||||||||| ||||    
T  33689279 caatgtcacccaactcaatgtca 33689301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 530 - 652
Target Start/End: Original strand, 41752954 - 41753076
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    ||||||||| | |||||||||||||||| |||||||||| | ||||| |||||||||||||||||||||| ||||||| ||||||||||| ||||||||     
T  41752954 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctttctctttcacaagcattgtgg 41753053  T
Q  630 cattgtgattggtcaatgtcacc 652  Q
    |||||||||||| ||||||||||    
T  41753054 cattgtgattggccaatgtcacc 41753076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 529 - 652
Target Start/End: Complemental strand, 47492196 - 47492073
Alignment:
Q  529 gggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtg 628  Q
    |||||||||  | |||||||||||||||| |||||||||| ||||||| ||||||||||| ||||||| || ||||||||||| ||||||| ||||||||    
T  47492196 gggaaaatagttgggtgacatagagttgggtgacattggtcatattggccaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtg 47492097  T
Q  629 acattgtgattggtcaatgtcacc 652  Q
    ||||||||||||| ||||||||||    
T  47492096 acattgtgattggccaatgtcacc 47492073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 530 - 652
Target Start/End: Complemental strand, 51046221 - 51046099
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    ||||||||| | ||||||||||||||||||||||||||| | ||||| |||||||||||||| |||| || |||||||||||||||||||  ||||||||    
T  51046221 ggaaaatacttgggtgacatagagttggatgacattggtgacattggccaatcacaatgccataatgcttgtgtttctctctctttcacaaacattgtga 51046122  T
Q  630 cattgtgattggtcaatgtcacc 652  Q
    |||| |||||| |||||||||||    
T  51046121 cattatgattgatcaatgtcacc 51046099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 527 - 658
Target Start/End: Complemental strand, 43139860 - 43139729
Alignment:
Q  527 aagggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattg 626  Q
    |||||||||||  | |||||||||||||||| |||||||||| | ||||| |||| |||||||||||||| || ||||||||||||||||||| |||||     
T  43139860 aagggaaaatatttgggtgacatagagttgggtgacattggtgacattggccaataacaatgccacaatgcttgtgtttctctctctttcacaagcattc 43139761  T
Q  627 tgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||||||||||||  | ||||||||||||||    
T  43139760 tgacattgtgattgaccgatgtcacccaactc 43139729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 572 - 658
Target Start/End: Complemental strand, 47677361 - 47677275
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||| |||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||    
T  47677361 attgatcaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgatcggtcaatgtcaccaaactc 47677275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 572 - 652
Target Start/End: Complemental strand, 1801552 - 1801472
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||||||||    
T  1801552 attggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggccaatgtcacc 1801472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 546 - 658
Target Start/End: Original strand, 18321657 - 18321769
Alignment:
Q  546 acatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaa 645  Q
    |||||||||||| ||| |||||| | ||||||||||||||||| ||||| |||| ||||| ||||| ||||||| ||||||||||||||||||||  |||    
T  18321657 acatagagttgggtgatattggtgacattggtcaatcacaatgtcacaaagtttgtgtttttctctttttcacatgcattgtgacattgtgattgaccaa 18321756  T
Q  646 tgtcacccaactc 658  Q
    ||||| |||||||    
T  18321757 tgtcatccaactc 18321769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 572 - 652
Target Start/End: Complemental strand, 30476580 - 30476500
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||||||||||||||| ||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  30476580 attggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 30476500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 570 - 658
Target Start/End: Complemental strand, 29031822 - 29031734
Alignment:
Q  570 atattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||||||||||| |||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||  |||| ||||| |||||    
T  29031822 atattggtcaattacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacctaactc 29031734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 542 - 650
Target Start/End: Complemental strand, 30734538 - 30734430
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 641  Q
    |||||||||||||| | |||||||||| | ||||| ||||||||||| || |||  || ||||||||| ||||||||| |||||||||||||||||| ||    
T  30734538 ggtgacatagagttaggtgacattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgtgacattgtgatcgg 30734439  T
Q  642 tcaatgtca 650  Q
    |||||||||    
T  30734438 tcaatgtca 30734430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 543 - 640
Target Start/End: Original strand, 55223235 - 55223332
Alignment:
Q  543 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattg 640  Q
    ||||||||||||| | |||||||||| ||||||||||||||||||   | |||  |||||||||||||||||||||| ||||||||||||| ||||||    
T  55223235 gtgacatagagttaggtgacattggtgatattggtcaatcacaatattagaatacttatgtttctctctctttcacaagcattgtgacattatgattg 55223332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 544 - 652
Target Start/End: Complemental strand, 30580890 - 30580782
Alignment:
Q  544 tgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtc 643  Q
    ||||||||| |||| ||||||| || | ||||||||||||||||| |||| || || ||||||| |||||||||||   ||||||||||| |||||||||    
T  30580890 tgacatagaattgggtgacatttgtgacattggtcaatcacaatgtcacagtgcttgtgtttctatctctttcacaaatattgtgacattatgattggtc 30580791  T
Q  644 aatgtcacc 652  Q
    ||| |||||    
T  30580790 aatatcacc 30580782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 596
Target Start/End: Original strand, 1801448 - 1801502
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    |||||||||||||||| |||||||||| | ||||| |||||||||||||||||||    
T  1801448 ggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatg 1801502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 596
Target Start/End: Original strand, 45103111 - 45103165
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    |||||||||||||||| |||||||||| |||||| |||||||||||| |||||||    
T  45103111 ggtgacatagagttgggtgacattggtgatattgatcaatcacaatgtcacaatg 45103165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 578 - 640
Target Start/End: Original strand, 50524740 - 50524802
Alignment:
Q  578 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattg 640  Q
    |||||| |||| |||||||||| ||||||||||||||||||| |||| || ||||||||||||    
T  50524740 caatcataatgtcacaatgtttgtgtttctctctctttcacaagcatcgtaacattgtgattg 50524802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 578 - 655
Target Start/End: Original strand, 50550013 - 50550090
Alignment:
Q  578 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaa 655  Q
    ||||||||||   |||||| || |||||||||||||||||||  |||| ||||||| |||||| ||||||||||||||    
T  50550013 caatcacaatattacaatgcttgtgtttctctctctttcacaaacattatgacattatgattgatcaatgtcacccaa 50550090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 596
Target Start/End: Complemental strand, 41753100 - 41753046
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    |||||||||||||||  |||||||||| | ||||| |||||||||||||||||||    
T  41753100 ggtgacatagagttgagtgacattggtgacattggccaatcacaatgccacaatg 41753046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 607 - 652
Target Start/End: Complemental strand, 45103180 - 45103135
Alignment:
Q  607 tctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||||||||||| |||||||||||||||||||| ||||| |||||    
T  45103180 tctctctttcacaagcattgtgacattgtgattgatcaatatcacc 45103135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 622 - 658
Target Start/End: Original strand, 47677337 - 47677373
Alignment:
Q  622 cattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||||||||||||||||| |||||||||||||||||    
T  47677337 cattgtgacattgtgattgatcaatgtcacccaactc 47677373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 599
Target Start/End: Original strand, 51046077 - 51046132
Alignment:
Q  544 tgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgttt 599  Q
    |||||||||||||||||| |||||| | |||| ||||||| |||| ||||||||||    
T  51046077 tgacatagagttggatgatattggtgacattgatcaatcataatgtcacaatgttt 51046132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 550 - 588
Target Start/End: Original strand, 34060203 - 34060241
Alignment:
Q  550 agagttggatgacattggtaatattggtcaatcacaatg 588  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  34060203 agagttggatgacattggtgatattggtcaatcataatg 34060241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 572 - 658
Target Start/End: Complemental strand, 49418797 - 49418711
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||||||||| | |||  || |||| || |||||||||||||||||||   ||| ||||||||||||||  |||| |||||||||||    
T  49418797 attggtcaattataatatcataatgcttgtgtttctctctctttcacaaatattatgacattgtgattgaccaatatcacccaactc 49418711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 542 - 588
Target Start/End: Complemental strand, 50524838 - 50524792
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatg 588  Q
    |||||||||||||||  |||||||||| ||||| |||||||||||||    
T  50524838 ggtgacatagagttgagtgacattggtgatattagtcaatcacaatg 50524792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 1e-40; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 531 - 652
Target Start/End: Complemental strand, 35441116 - 35440995
Alignment:
Q  531 gaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgac 630  Q
    |||||||| | |||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||    
T  35441116 gaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgac 35441017  T
Q  631 attgtgattggtcaatgtcacc 652  Q
    ||||||||||||||||||||||    
T  35441016 attgtgattggtcaatgtcacc 35440995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 530 - 652
Target Start/End: Original strand, 5033151 - 5033273
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    ||||||||| | |||||||||||||||| |||||||||| | ||||  ||||||||||||||||||| || ||||||||||||||||||| |||||||||    
T  5033151 ggaaaatacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 5033250  T
Q  630 cattgtgattggtcaatgtcacc 652  Q
    |||||||||||||||||||||||    
T  5033251 cattgtgattggtcaatgtcacc 5033273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 529 - 658
Target Start/End: Complemental strand, 8243537 - 8243408
Alignment:
Q  529 gggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtg 628  Q
    |||||||||| | |||||||||||||||| |||||||||| |  |||||||||||||||||||||||| || ||||||||||||||||||| ||||||||    
T  8243537 gggaaaatacttgggtgacatagagttgggtgacattggtgacgttggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 8243438  T
Q  629 acattgtgattggtcaatgtcacccaactc 658  Q
     ||||||||||| |||||||||| ||||||    
T  8243437 gcattgtgattgatcaatgtcactcaactc 8243408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 529 - 652
Target Start/End: Complemental strand, 33841740 - 33841617
Alignment:
Q  529 gggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtg 628  Q
    |||||||||| | |||||||||||||||| |||||||||| | ||||  |||||| |||||||||||| || ||||||||||||||||||| ||||||||    
T  33841740 gggaaaatacttgggtgacatagagttgggtgacattggtgacattgaccaatcagaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 33841641  T
Q  629 acattgtgattggtcaatgtcacc 652  Q
    ||| ||||||||||||||||||||    
T  33841640 acaatgtgattggtcaatgtcacc 33841617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 531 - 652
Target Start/End: Original strand, 10086748 - 10086869
Alignment:
Q  531 gaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgac 630  Q
    |||||||| | ||||||||||| |||| ||||||| || | ||||||||||||||||| || ||||||| |||||||||||||||||||  |||||||||    
T  10086748 gaaaatacttgggtgacatagaattgggtgacattagtgacattggtcaatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtgac 10086847  T
Q  631 attgtgattggtcaatgtcacc 652  Q
    ||||||||||||||||||||||    
T  10086848 attgtgattggtcaatgtcacc 10086869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 542 - 652
Target Start/End: Original strand, 5667099 - 5667209
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 641  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| || | ||||||||||||||||| ||||| ||||||||| |||||    
T  5667099 ggtgacatagagttggatgacattggtgacattggtcaatcacaatgtcacaatgcttgtatttctctctctttcacaagcattatgacattgtaattgg 5667198  T
Q  642 tcaatgtcacc 652  Q
     ||||||||||    
T  5667199 ccaatgtcacc 5667209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 542 - 652
Target Start/End: Original strand, 8796424 - 8796534
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 641  Q
    |||||||||||||| | ||| ||| || ||||||||||||||||||| ||||||| || ||||||||| ||||||||| ||||||||||||| |||||||    
T  8796424 ggtgacatagagttaggtgatatttgtgatattggtcaatcacaatgtcacaatgcttgtgtttctctatctttcacaagcattgtgacattttgattgg 8796523  T
Q  642 tcaatgtcacc 652  Q
    |||||||||||    
T  8796524 tcaatgtcacc 8796534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 527 - 652
Target Start/End: Complemental strand, 45191278 - 45191153
Alignment:
Q  527 aagggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattg 626  Q
    ||||| |||||| | |||||||||||||||||||| |||||| | ||||  |||||| ||||  ||||||||| ||||||||||||||||| | ||||||    
T  45191278 aaggggaaatacttgggtgacatagagttggatgatattggtgacattgaccaatcaaaatgttacaatgtttgtgtttctctctctttcataagcattg 45191179  T
Q  627 tgacattgtgattggtcaatgtcacc 652  Q
    || ||||||||||  |||||||||||    
T  45191178 tggcattgtgattaatcaatgtcacc 45191153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 572 - 652
Target Start/End: Original strand, 39850987 - 39851067
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| ||||| | | ||||||||||||||||||||||    
T  39850987 attggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattataatattgtgattggtcaatgtcacc 39851067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 543 - 658
Target Start/End: Original strand, 34229644 - 34229759
Alignment:
Q  543 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggt 642  Q
    ||||||||||||||| ||||||| || | ||  ||||||||||||| || |||| || ||||||||||||||||||| ||||||||| ||||||||||      
T  34229644 gtgacatagagttgggtgacattagtgacatgagtcaatcacaatgtcagaatgcttgtgtttctctctctttcacaagcattgtgatattgtgattgac 34229743  T
Q  643 caatgtcacccaactc 658  Q
    |||||||||| |||||    
T  34229744 caatgtcacctaactc 34229759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 542 - 613
Target Start/End: Complemental strand, 43844605 - 43844534
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctct 613  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||| ||||||| || |||||||||||||    
T  43844605 ggtgacatagagttggatgacattggtgatattgatcaatcacaatgtcacaatgcttgtgtttctctctct 43844534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 585 - 657
Target Start/End: Complemental strand, 34541896 - 34541824
Alignment:
Q  585 aatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaact 657  Q
    |||||||||||| || ||||||||||||||||||| ||||||||| ||| ||||||| |||||||||||||||    
T  34541896 aatgccacaatgcttgtgtttctctctctttcacaagcattgtgatattatgattggccaatgtcacccaact 34541824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 572 - 651
Target Start/End: Original strand, 4958631 - 4958709
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcac 651  Q
    ||||| ||||||||||| || ||||||| ||||||||||||||||||| | |||||||| ||||||||||||||||||||    
T  4958631 attggccaatcacaatgtcataatgtttgtgtttctctctctttcacaagtattgtgac-ttgtgattggtcaatgtcac 4958709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 652
Target Start/End: Complemental strand, 35031753 - 35031640
Alignment:
Q  540 taggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaa-tgtttatgtttctctctctttcacaggcattgtgacattgtgat 638  Q
    |||||||||||||||||  ||| ||| || ||||||||||| ||||||  || || ||  | | ||||||||||||||||| |||||| |||||||||||    
T  35031753 taggtgacatagagttgagtgatatttgtgatattggtcaaccacaatatcataagtgactttttttctctctctttcacaagcattgcgacattgtgat 35031654  T
Q  639 tggtcaatgtcacc 652  Q
    || |||||||||||    
T  35031653 tgatcaatgtcacc 35031640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 530 - 610
Target Start/End: Original strand, 2581815 - 2581895
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctc 610  Q
    ||||||||| | ||||||||||| |||| |||||||| | | ||||| ||||||||||||||||||| || ||||||||||    
T  2581815 ggaaaatacttgggtgacatagaattgggtgacattgttgacattggccaatcacaatgccacaatgcttgtgtttctctc 2581895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 590 - 652
Target Start/End: Original strand, 31159901 - 31159963
Alignment:
Q  590 cacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||| |||||||  |||||||||    
T  31159901 cacaatatttttgtttctctctctttcacaagcattgtgacattatgattggcgaatgtcacc 31159963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 542 - 602
Target Start/End: Original strand, 45191129 - 45191189
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatg 602  Q
    |||||||||||||||||||| |||||| | |||| | |||||||||||||||||| |||||    
T  45191129 ggtgacatagagttggatgatattggtgacattgattaatcacaatgccacaatgcttatg 45191189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 616 - 658
Target Start/End: Complemental strand, 6296667 - 6296625
Alignment:
Q  616 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||| ||||| ||||||||||||||||||||||||||||||||    
T  6296667 cacaagcattatgacattgtgattggtcaatgtcacccaactc 6296625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 530 - 596
Target Start/End: Original strand, 22649835 - 22649901
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    ||||||||| | |||||||||||||||  |||||||||| | |||||  ||||||||||||||||||    
T  22649835 ggaaaatacttgggtgacatagagttgagtgacattggtgacattggctaatcacaatgccacaatg 22649901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 633
Target Start/End: Original strand, 6296643 - 6296698
Alignment:
Q  578 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacatt 633  Q
    ||||||||||| || |||| || ||||||||||||||||||| | |||||||||||    
T  6296643 caatcacaatgtcataatgcttgtgtttctctctctttcacaagtattgtgacatt 6296698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 599
Target Start/End: Complemental strand, 10086891 - 10086836
Alignment:
Q  544 tgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgttt 599  Q
    |||||||||||||| |||||||||| | ||||  ||||||||||| ||||||||||    
T  10086891 tgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgttt 10086836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 542 - 596
Target Start/End: Complemental strand, 5033297 - 5033243
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    |||||||||||||||| |||||||||| | ||||  ||||||||||| |||||||    
T  5033297 ggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatg 5033243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 530 - 588
Target Start/End: Complemental strand, 5667245 - 5667187
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatg 588  Q
    ||||||||| | |||||||||||||| |||||||||||| | ||||| |||| ||||||    
T  5667245 ggaaaatacttgggtgacatagagtttgatgacattggtgacattggccaattacaatg 5667187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 652
Target Start/End: Complemental strand, 37618802 - 37618753
Alignment:
Q  603 tttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||||||||| | ||| | ||||||||||||||||||| ||||||||||    
T  37618802 tttctctctctcttacaaggattgtgacattgtgattggccaatgtcacc 37618753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 529 - 652
Target Start/End: Complemental strand, 23444418 - 23444295
Alignment:
Q  529 gggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtg 628  Q
    |||||||||  | |||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||    
T  23444418 gggaaaatatttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 23444319  T
Q  629 acattgtgattggtcaatgtcacc 652  Q
    ||||||||||||||||||||||||    
T  23444318 acattgtgattggtcaatgtcacc 23444295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 531 - 652
Target Start/End: Original strand, 51265436 - 51265557
Alignment:
Q  531 gaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgac 630  Q
    |||||||| | |||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||    
T  51265436 gaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgac 51265535  T
Q  631 attgtgattggtcaatgtcacc 652  Q
    ||| ||||||||||||||||||    
T  51265536 attatgattggtcaatgtcacc 51265557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 530 - 652
Target Start/End: Original strand, 6271692 - 6271814
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    ||||||||| | |||||||||||||||| ||| |||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||| |||||||||    
T  6271692 ggaaaatacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 6271791  T
Q  630 cattgtgattggtcaatgtcacc 652  Q
    |||||||||||| ||||||||||    
T  6271792 cattgtgattggccaatgtcacc 6271814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 554 - 652
Target Start/End: Original strand, 47661856 - 47661954
Alignment:
Q  554 ttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    |||| |||||||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47661856 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcacc 47661954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 572 - 652
Target Start/End: Original strand, 42375042 - 42375122
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  42375042 attggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcacc 42375122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 572 - 658
Target Start/End: Complemental strand, 47404691 - 47404605
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  47404691 attggtcaatcacaatgccacaatgcttgggtttctctctctttcacaagcattgtgacattgtgattgaccaatgtcacccaactc 47404605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 532 - 629
Target Start/End: Complemental strand, 30861920 - 30861823
Alignment:
Q  532 aaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    ||||||| | |||||||||||||||||||| |||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||| |||||||||    
T  30861920 aaaatacttgggtgacatagagttggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 30861823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 570 - 655
Target Start/End: Original strand, 52028579 - 52028664
Alignment:
Q  570 atattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaa 655  Q
    ||||||| ||||||| ||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  52028579 atattggccaatcacgatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacccaa 52028664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 572 - 658
Target Start/End: Original strand, 40789211 - 40789297
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||| ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||    
T  40789211 attggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatatcaccaaactc 40789297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 590 - 657
Target Start/End: Complemental strand, 24006158 - 24006091
Alignment:
Q  590 cacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaact 657  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||    
T  24006158 cacaatgtttatgtttctctctctttcacaagcattgtgtcattgtgattggccaatgtcacccaact 24006091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 525 - 658
Target Start/End: Complemental strand, 31430602 - 31430481
Alignment:
Q  525 agaagggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcat 624  Q
    |||||||||||||| | |||||||||||||||| |||||||||          |||| ||||||||||   |||| ||||||||||||||||| | ||||    
T  31430602 agaagggaaaatacttgggtgacatagagttgggtgacattggc---------caattacaatgccac---gtttgtgtttctctctctttcataagcat 31430515  T
Q  625 tgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||||||||||||||||||||||||||||||||    
T  31430514 tgtgacattgtgattggtcaatgtcacccaactc 31430481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 542 - 652
Target Start/End: Original strand, 35682168 - 35682278
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 641  Q
    |||||||||||||| | ||| |||||| | ||||| ||||||||||| || |||  || ||||||||| ||||||||| |||||||||||||||||| ||    
T  35682168 ggtgacatagagttaggtgatattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgtgacattgtgatcgg 35682267  T
Q  642 tcaatgtcacc 652  Q
    |||||||||||    
T  35682268 tcaatgtcacc 35682278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 572 - 658
Target Start/End: Complemental strand, 55090102 - 55090016
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||||||||||||||| ||||||| || ||| ||||||||||||||| ||||||||||||||||||||  ||||||||| ||||||    
T  55090102 attggtcaatcacaatgtcacaatgcttgtgtctctctctctttcacaagcattgtgacattgtgattgaccaatgtcactcaactc 55090016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 590 - 658
Target Start/End: Complemental strand, 50384193 - 50384125
Alignment:
Q  590 cacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  50384193 cacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacccaactc 50384125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 542 - 655
Target Start/End: Complemental strand, 26186150 - 26186039
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 641  Q
    |||||||||||||||| | |||||| | | ||||| ||||||||||  ||||||| || |||||||||||  |||||| ||||||||||||||||||||     
T  26186150 ggtgacatagagttgggtaacattgatgacattggccaatcacaatttcacaatgcttgtgtttctctct--ttcacaagcattgtgacattgtgattga 26186053  T
Q  642 tcaatgtcacccaa 655  Q
     |||||||||||||    
T  26186052 ccaatgtcacccaa 26186039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 578 - 652
Target Start/End: Original strand, 47762646 - 47762720
Alignment:
Q  578 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    |||||||||||  ||||||||||||||||||||||||||||| ||||||||||||| || |||  ||||||||||    
T  47762646 caatcacaatgttacaatgtttatgtttctctctctttcacaagcattgtgacattatggttgaccaatgtcacc 47762720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 593 - 657
Target Start/End: Complemental strand, 28694008 - 28693944
Alignment:
Q  593 aatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaact 657  Q
    ||||||| |||||||||||||||||||  |||||||| |||||||||||||||||||| ||||||    
T  28694008 aatgtttgtgtttctctctctttcacaaacattgtgatattgtgattggtcaatgtcatccaact 28693944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 572 - 652
Target Start/End: Original strand, 53954642 - 53954722
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||| ||||||||||| ||||||| |  |||||||| |||||||||| ||||||||||||||| ||||| ||||||||||    
T  53954642 attggccaatcacaatgtcacaatgctagtgtttctcactctttcacaagcattgtgacattgtaattggacaatgtcacc 53954722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 605
Target Start/End: Complemental strand, 3862684 - 3862619
Alignment:
Q  540 taggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgttt 605  Q
    |||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| || |||||    
T  3862684 taggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgttt 3862619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 605
Target Start/End: Complemental strand, 3871441 - 3871376
Alignment:
Q  540 taggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgttt 605  Q
    |||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| || |||||    
T  3871441 taggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgttt 3871376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 590 - 658
Target Start/End: Complemental strand, 45591498 - 45591430
Alignment:
Q  590 cacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| ||||||   |||| ||||||||||    
T  45591498 cacaatgtttgtgtttctctctctttcacaagcattgtgacattatgattgacgaatgccacccaactc 45591430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 650
Target Start/End: Complemental strand, 25818461 - 25818401
Alignment:
Q  590 cacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtca 650  Q
    ||||||| || |||||||||||||||||||  |||||||||||||||||||  ||||||||    
T  25818461 cacaatgattgtgtttctctctctttcacaatcattgtgacattgtgattgaccaatgtca 25818401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 570 - 641
Target Start/End: Original strand, 38714853 - 38714924
Alignment:
Q  570 atattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 641  Q
    ||||||| ||||||||||| || ||| ||||||||||| | |||||||||  ||||||||||||| ||||||    
T  38714853 atattggccaatcacaatgtcataatatttatgtttctatttctttcacaaacattgtgacattgagattgg 38714924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 596
Target Start/End: Complemental strand, 42375146 - 42375092
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    |||||||||||||||| |||||||||| | |||| |||||||||||| |||||||    
T  42375146 ggtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatg 42375092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 578 - 651
Target Start/End: Complemental strand, 31532789 - 31532716
Alignment:
Q  578 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcac 651  Q
    ||||||||| | |||||||||| | ||||||||||||| |||   ||||||||||||||||||  |||||||||    
T  31532789 caatcacaacgtcacaatgtttgtatttctctctcttttacatatattgtgacattgtgattgaacaatgtcac 31532716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 655
Target Start/End: Original strand, 17285813 - 17285845
Alignment:
Q  623 attgtgacattgtgattggtcaatgtcacccaa 655  Q
    |||||||||||||||||||||||||||||||||    
T  17285813 attgtgacattgtgattggtcaatgtcacccaa 17285845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 544 - 652
Target Start/End: Original strand, 44379934 - 44380042
Alignment:
Q  544 tgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtc 643  Q
    |||||||||||||  |||||||||  | ||||| |||| | |||| ||||||| ||  |||||||||| ||| | | | ||||| |||||||||||||||    
T  44379934 tgacatagagttgagtgacattggcgacattggccaattataatgtcacaatgcttgcgtttctctctattttataagtattgtaacattgtgattggtc 44380033  T
Q  644 aatgtcacc 652  Q
    ||| |||||    
T  44380034 aatatcacc 44380042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 621 - 657
Target Start/End: Complemental strand, 53954667 - 53954631
Alignment:
Q  621 gcattgtgacattgtgattggtcaatgtcacccaact 657  Q
    ||||||||||||||||||||| |||||||||||||||    
T  53954667 gcattgtgacattgtgattggccaatgtcacccaact 53954631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 542 - 596
Target Start/End: Complemental strand, 47661978 - 47661924
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    |||||||||||||||| |||||||||| | ||||  ||||||||||| |||||||    
T  47661978 ggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatg 47661924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 658
Target Start/End: Original strand, 24006151 - 24006180
Alignment:
Q  629 acattgtgattggtcaatgtcacccaactc 658  Q
    ||||||||||||||||||||||||||||||    
T  24006151 acattgtgattggtcaatgtcacccaactc 24006180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 667
Target Start/End: Complemental strand, 40789235 - 40789190
Alignment:
Q  622 cattgtgacattgtgattggtcaatgtcacccaactcaaggtcatt 667  Q
    |||||||||||||||||||| |||||||||| ||||| | ||||||    
T  40789235 cattgtgacattgtgattggccaatgtcaccaaactctatgtcatt 40789190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 530 - 652
Target Start/End: Original strand, 16514414 - 16514536
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    ||||||||| | |||||||||||||||| |||||||||| | ||||| ||||||| |||||| |||| || ||||||||||||||||||| |||||||||    
T  16514414 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcactatgccataatgcttgtgtttctctctctttcacaagcattgtga 16514513  T
Q  630 cattgtgattggtcaatgtcacc 652  Q
    |||||||||||||||||||||||    
T  16514514 cattgtgattggtcaatgtcacc 16514536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 554 - 658
Target Start/End: Original strand, 15011294 - 15011398
Alignment:
Q  554 ttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcaccc 653  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |    
T  15011294 ttgggtgacattggtgatattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcactc 15011393  T
Q  654 aactc 658  Q
    |||||    
T  15011394 aactc 15011398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 530 - 652
Target Start/End: Complemental strand, 29508839 - 29508716
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    ||||||||| | |||||||||||||||| ||| |||||| | ||||| ||||||||||||| ||||| || ||||||||||||||||||| ||||||||     
T  29508839 ggaaaatacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtgg 29508740  T
Q  630 ca-ttgtgattggtcaatgtcacc 652  Q
    || |||||||||||||||||||||    
T  29508739 catttgtgattggtcaatgtcacc 29508716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 554 - 652
Target Start/End: Complemental strand, 14470716 - 14470618
Alignment:
Q  554 ttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    |||||||| |||||||| ||| | ||||||||||| |||||||||| ||||||||||||||||||| ||||||  ||||||||||||||||||||||||    
T  14470716 ttggatgatattggtaacattagccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgcaacattgtgattggtcaatgtcacc 14470618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 572 - 652
Target Start/End: Complemental strand, 6217330 - 6217250
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||||||||    
T  6217330 attggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggccaatgtcacc 6217250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 580 - 651
Target Start/End: Original strand, 37961746 - 37961817
Alignment:
Q  580 atcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcac 651  Q
    |||||||||||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  37961746 atcacaatgccataatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcac 37961817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 572 - 658
Target Start/End: Original strand, 2828616 - 2828702
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||| ||||||||||| || |||| || ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||    
T  2828616 attggccaatcacaatgtcaaaatgcttgtgtttctctctctttcagaagcattgtgacattgtgattggccaatgtcacccaactc 2828702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 530 - 658
Target Start/End: Complemental strand, 9173129 - 9173001
Alignment:
Q  530 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 629  Q
    ||||||||  |||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||| || | ||||||| ||||| | | ||||| ||     
T  9173129 ggaaaatatttaggtgacatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttgtatttctctttcttttataagcattatgg 9173030  T
Q  630 cattgtgattggtcaatgtcacccaactc 658  Q
    |||| ||||    ||||||||||||||||    
T  9173029 cattctgatgaaccaatgtcacccaactc 9173001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 572 - 652
Target Start/End: Complemental strand, 29925676 - 29925596
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||  || ||||||||||    
T  29925676 attggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattctgacattgtgaggggccaatgtcacc 29925596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 542 - 652
Target Start/End: Complemental strand, 14229479 - 14229379
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 641  Q
    ||||||||||||||||||||||||||          ||||||||||| ||||||| || ||||||||||||||||||| ||||||||||||||||||||     
T  14229479 ggtgacatagagttggatgacattgg----------caatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattga 14229390  T
Q  642 tcaatgtcacc 652  Q
     ||||||||||    
T  14229389 ccaatgtcacc 14229379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 575 - 658
Target Start/End: Complemental strand, 37762104 - 37762021
Alignment:
Q  575 ggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||||||||||||  ||||||| || ||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||||||    
T  37762104 ggtcaatcacaatatcacaatgcttgtgtttctttctctttcacaagcattgcgacattgtgattggtcaatgtcactcaactc 37762021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 578 - 652
Target Start/End: Original strand, 38933625 - 38933699
Alignment:
Q  578 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||    
T  38933625 caatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattatgattggccaacgtcacc 38933699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 554 - 651
Target Start/End: Original strand, 6721965 - 6722062
Alignment:
Q  554 ttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcac 651  Q
    ||||||||||||||| | ||||  ||||||||||  ||||||| || |||||||||||||||||||  |||||||||||||||||||| |||| ||||    
T  6721965 ttggatgacattggtgacattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaaacattgtgacattgtgattggccaatatcac 6722062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 572 - 658
Target Start/End: Original strand, 2893995 - 2894081
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||| ||||||||||  ||||||| || | ||||||||||||||||| ||||||||||| ||||||||  |||||||| |||||||    
T  2893995 attggccaatcacaatctcacaatgcttgtatttctctctctttcacaagcattgtgacactgtgattgaccaatgtcatccaactc 2894081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 544 - 596
Target Start/End: Complemental strand, 33018679 - 33018627
Alignment:
Q  544 tgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    |||||||||||||| |||||||||| ||||||||||||||||||| |||||||    
T  33018679 tgacatagagttgggtgacattggtgatattggtcaatcacaatgtcacaatg 33018627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 596
Target Start/End: Original strand, 6217226 - 6217280
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    |||||||||||||||| |||||||||| | ||||| |||||||||||||||||||    
T  6217226 ggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatg 6217280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 542 - 599
Target Start/End: Complemental strand, 6722087 - 6722030
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgttt 599  Q
    |||||||||||||||| ||||||| || ||||||| ||||||||||| ||||||||||    
T  6722087 ggtgacatagagttggttgacattagtgatattggccaatcacaatgtcacaatgttt 6722030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 543 - 640
Target Start/End: Original strand, 24115923 - 24116020
Alignment:
Q  543 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattg 640  Q
    |||| |||||||||  | |||||||||| ||||| |||||||||||  ||||||  | |||||| | |||||||||| |||||| |||||||||||||    
T  24115923 gtgagatagagttgagtcacattggtaacattggccaatcacaatgttacaatgcctgtgtttcacactctttcacaagcattgcgacattgtgattg 24116020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 540 - 652
Target Start/End: Original strand, 32545786 - 32545900
Alignment:
Q  540 taggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaat---gtttatgtttctctctctttcacaggcattgtgacattgtg 636  Q
    |||||||||||||||| | |||||||||| | ||||||||| ||| ||| |||||    |||| | ||| ||||||||||| | ||||||||||||| ||    
T  32545786 taggtgacatagagttaggtgacattggtgacattggtcaaccacgatgtcacaagtaagttttt-tttatctctctttcataagcattgtgacattatg 32545884  T
Q  637 attggtcaatgtcacc 652  Q
    ||||| ||||||||||    
T  32545885 attggccaatgtcacc 32545900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 537 - 596
Target Start/End: Original strand, 14229350 - 14229409
Alignment:
Q  537 acataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    |||| |||||||||||||| | |||||||||| | ||||||||||||||||| |||||||    
T  14229350 acattggtgacatagagttcggtgacattggtgacattggtcaatcacaatgtcacaatg 14229409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 652
Target Start/End: Original strand, 14892299 - 14892372
Alignment:
Q  578 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||||||||| |||| ||||| | ||||||||||||||| | | ||||| |||||||||||| |||||||||||    
T  14892299 caatcacaatgtcaca-tgtttgtctttctctctctttcataagtattgtaacattgtgattgatcaatgtcacc 14892372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 588
Target Start/End: Complemental strand, 14892396 - 14892350
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatg 588  Q
    ||||||||||||||||||||||||||| | |||| ||||||||||||    
T  14892396 ggtgacatagagttggatgacattggtgacattgatcaatcacaatg 14892350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 616 - 658
Target Start/End: Complemental strand, 38933649 - 38933607
Alignment:
Q  616 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||| |||||||| |||||||||||||||||||||||||||||    
T  38933649 cacaagcattgtggcattgtgattggtcaatgtcacccaactc 38933607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 616 - 658
Target Start/End: Complemental strand, 2828646 - 2828604
Alignment:
Q  616 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||    
T  2828646 cacaagcattttgacattgtgattggccaatgtcacccaactc 2828604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 658
Target Start/End: Complemental strand, 2894020 - 2893983
Alignment:
Q  621 gcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  2894020 gcattgtgagattgtgattggccaatgtcacccaactc 2893983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 588
Target Start/End: Complemental strand, 24116055 - 24116010
Alignment:
Q  543 gtgacatagagttggatgacattggtaatattggtcaatcacaatg 588  Q
    ||||||||||||||| || |||| || |||||||||||||||||||    
T  24116055 gtgacatagagttgggtgccattagtgatattggtcaatcacaatg 24116010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 540 - 596
Target Start/End: Original strand, 29508690 - 29508747
Alignment:
Q  540 taggtgacatagagttggatgacattggtaatattggtcaatcac-aatgccacaatg 596  Q
    |||||||||||||||||| |||||||||| | ||||  ||||||| ||||||||||||    
T  29508690 taggtgacatagagttgggtgacattggtgacattgaccaatcacaaatgccacaatg 29508747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 72; Significance: 3e-32; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 528 - 651
Target Start/End: Complemental strand, 27370 - 27247
Alignment:
Q  528 agggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgt 627  Q
    ||||||||||| | ||||| |||||||||| |||||||||| ||||||| ||||||||||||||||||| || ||||||||||||||||||| | ||| |    
T  27370 agggaaaatacttgggtgatatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttctgtttctctctctttcacaagaattat 27271  T
Q  628 gacattgtgattggtcaatgtcac 651  Q
    |||||||||||||| |||| ||||    
T  27270 gacattgtgattggccaatatcac 27247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 542 - 588
Target Start/End: Original strand, 27222 - 27268
Alignment:
Q  542 ggtgacatagagttggatgacattggtaatattggtcaatcacaatg 588  Q
    |||||||||||||||| ||||||| || ||||||| |||||||||||    
T  27222 ggtgacatagagttgggtgacattagtgatattggccaatcacaatg 27268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 3e-32; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 527 - 658
Target Start/End: Complemental strand, 551316 - 551185
Alignment:
Q  527 aagggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattg 626  Q
    |||||||||||  | ||||||||||| |||||||| |||||| | ||||| ||||||||||||||||||| || |||||||||||||||||||  |||||    
T  551316 aagggaaaatatttgggtgacatagaattggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattg 551217  T
Q  627 tgacattgtgattggtcaatgtcacccaactc 658  Q
    || |||||||||||  ||||||||||||||||    
T  551216 tggcattgtgattgaccaatgtcacccaactc 551185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 543 - 650
Target Start/End: Original strand, 17750906 - 17751012
Alignment:
Q  543 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggt 642  Q
    |||||||||||||| ||||||||||| | ||||||||||||||||| |||||||||| | ||| ||||||||||||| |||||||||||||||||| ||     
T  17750906 gtgacatagagttg-atgacattggtgacattggtcaatcacaatgtcacaatgtttgtatttatctctctttcacaagcattgtgacattgtgatcggc 17751004  T
Q  643 caatgtca 650  Q
    ||||||||    
T  17751005 caatgtca 17751012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 576 - 652
Target Start/End: Original strand, 12343136 - 12343212
Alignment:
Q  576 gtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  12343136 gtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 12343212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 540 - 637
Target Start/End: Original strand, 24587461 - 24587558
Alignment:
Q  540 taggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtga 637  Q
    |||||||||||||||||| ||||||| || | ||||||||||||||||| ||||||| || |||||||| || ||||||| |||||||||||||||||    
T  24587461 taggtgacatagagttgggtgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctcgctttttcacaagcattgtgacattgtga 24587558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 572 - 658
Target Start/End: Complemental strand, 10521955 - 10521869
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||||||||||||||| || |||| || ||||||||||||||||| | ||||||||||||||||||||| |||||||||| |||||    
T  10521955 attggtcaatcacaatgtcataatgcttgtgtttctctctctttcataagcattgtgacattgtgattggccaatgtcaccaaactc 10521869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 579 - 657
Target Start/End: Complemental strand, 2315403 - 2315325
Alignment:
Q  579 aatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaact 657  Q
    ||||||||| ||| |||| ||||||||| ||||||||||||  ||||||||||||||||||| ||||||||||||||||    
T  2315403 aatcacaataccataatgcttatgtttcgctctctttcacaaacattgtgacattgtgattgatcaatgtcacccaact 2315325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 529 - 596
Target Start/End: Original strand, 24975741 - 24975808
Alignment:
Q  529 gggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    |||||||||| | |||||||||||||||| |||||||||| | |||||||||||||||||||||||||    
T  24975741 gggaaaatacttgggtgacatagagttggctgacattggtgacattggtcaatcacaatgccacaatg 24975808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 570 - 652
Target Start/End: Original strand, 13043487 - 13043569
Alignment:
Q  570 atattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    |||||||||||||  |||| ||||||| || ||||||||||||||||||| ||||||||| ||||||||| | ||||||||||    
T  13043487 atattggtcaatcgaaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgatattgtgattagccaatgtcacc 13043569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 578 - 652
Target Start/End: Complemental strand, 24618701 - 24618627
Alignment:
Q  578 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    ||||||||||| ||||||| || ||||||||||||||||| | ||||| |||||||||||||| |||||||||||    
T  24618701 caatcacaatgtcacaatgcttgtgtttctctctctttcataagcattatgacattgtgattgatcaatgtcacc 24618627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 616 - 658
Target Start/End: Original strand, 24618677 - 24618719
Alignment:
Q  616 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||| ||||||||||||||||||||||||| ||||||||||||    
T  24618677 cacaagcattgtgacattgtgattggtcaacgtcacccaactc 24618719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 616 - 658
Target Start/End: Complemental strand, 31654367 - 31654325
Alignment:
Q  616 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    |||| ||||||||||||||||||||| ||||||||||||||||    
T  31654367 cacaagcattgtgacattgtgattggccaatgtcacccaactc 31654325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 602
Target Start/End: Original strand, 24618604 - 24618663
Alignment:
Q  543 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatg 602  Q
    ||||||||||||||| |||||||||| | |||| |||||||||||| || |||| |||||    
T  24618604 gtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcataatgcttatg 24618663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 619
Target Start/End: Original strand, 31654337 - 31654384
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcaca 619  Q
    ||||| ||||||||||| ||||||| || |||||||||||||||||||    
T  31654337 attggccaatcacaatgtcacaatgcttgtgtttctctctctttcaca 31654384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 572 - 658
Target Start/End: Original strand, 63789 - 63875
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  63789 attggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacccaactc 63875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 543 - 641
Target Start/End: Complemental strand, 7181 - 7084
Alignment:
Q  543 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 641  Q
    ||||||||||||||| |||||||||| | ||||| ||||||||||| ||||||| || ||||||||||||||||||| |||||||||||||||||||||    
T  7181 gtgacatagagttgg-tgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgg 7084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 596
Target Start/End: Original strand, 7050 - 7103
Alignment:
Q  543 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    ||||||||||||||| |||||||||| ||||| | ||||||||||| |||||||    
T  7050 gtgacatagagttgggtgacattggtgatattagccaatcacaatgtcacaatg 7103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 572 - 650
Target Start/End: Complemental strand, 49809 - 49731
Alignment:
Q  572 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtca 650  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  49809 attggccaatcacaatgccacaatgcttgtgtttctctttctttcacaagcattgtgacattgtgattggtcaatgtca 49731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 591 - 658
Target Start/End: Complemental strand, 2974 - 2907
Alignment:
Q  591 acaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 658  Q
    ||||||||| |||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||    
T  2974 acaatgtttgtgtttctctctctttcacaaacattgtgacattgtgattggtcaatatcacccaactc 2907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 592 - 655
Target Start/End: Original strand, 2265 - 2328
Alignment:
Q  592 caatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaa 655  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcgcccaa 2328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 592 - 655
Target Start/End: Original strand, 2265 - 2328
Alignment:
Q  592 caatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaa 655  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcgcccaa 2328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 554 - 652
Target Start/End: Complemental strand, 5013 - 4918
Alignment:
Q  554 ttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 652  Q
    |||| ||| |||||| |||||||||||| ||||||  ||| |   ||||||| ||||||||||||| ||||||| | ||||||||||||| ||||||||    
T  5013 ttgggtgatattggtgatattggtcaattacaatgttacact---tatgtttgtctctctttcacaagcattgtaatattgtgattggtcgatgtcacc 4918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 596
Target Start/End: Original strand, 19125 - 19178
Alignment:
Q  543 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 596  Q
    ||||||||||||||| |||||||| | |||||| |||||||||||| |||||||    
T  19125 gtgacatagagttgggtgacattgatgatattgatcaatcacaatgtcacaatg 19178  T

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Target: scaffold0180; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 593 - 646
Target Start/End: Complemental strand, 19207 - 19154
Alignment:
Q  593 aatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaat 646  Q
    ||||||| ||||||||| |||| |||| |||||||||||||||||||| |||||    
T  19207 aatgtttgtgtttctctttcttccacaagcattgtgacattgtgattgatcaat 19154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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