View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_high_62 (Length: 374)
Name: NF0154_2D_high_62
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_high_62 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 3 - 361
Target Start/End: Original strand, 31137047 - 31137405
Alignment:
| Q |
3 |
agtttggagttcctattgctctcacaagattttcaattatacctttgtattcatcagtttctcctgcagagttaacaaaatccatagnnnnnnntgtgtt |
102 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
31137047 |
agtttggtgttcctattgctctcacaagattttcaattatacctttatattcatcagtttctcctgcagagttaacaaaatccatagaaaaaaatgcgtt |
31137146 |
T |
|
| Q |
103 |
tgacaaaaaattcaatgaagtcttaaaaacagcttttccaacatcaaccgcttcaccaattacgctgcttttttctatatcacataaaagctcttgaagc |
202 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| | | ||| | || |||||||||||||||||||||||| |
|
|
| T |
31137147 |
tgacaaaaaattcaatgaagttttaaaaacagcttttccaacatcaacagcttccccaattaagttacttctatcaatatcacataaaagctcttgaagc |
31137246 |
T |
|
| Q |
203 |
ttcttacacctaagtgcatagctagcatcaagagttttgctagaaaacaaatggtttttgcatatttttcttaggtctctccaaagatcgcaaaccggca |
302 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31137247 |
ttcttacacctaagtgcatggctagcatcaagagttttgctagaaaacaaatggtttttgcatatttttcttaggtctctccaaagatcgcaaaccggca |
31137346 |
T |
|
| Q |
303 |
taaacggtaagctaaaatgatcatgattgaaaactgtaacagcttgagggactcttctg |
361 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31137347 |
taaagggtaagctaaaatgatcatgattgaaaactgtaacagcttgagggactgttctg |
31137405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 3 - 361
Target Start/End: Complemental strand, 31151992 - 31151634
Alignment:
| Q |
3 |
agtttggagttcctattgctctcacaagattttcaattatacctttgtattcatcagtttctcctgcagagttaacaaaatccatagnnnnnnntgtgtt |
102 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
31151992 |
agtttggtgttcctattgctctcacaagattttcaattatacctttatattcatcagtttctcctgcagagttaacaaaatccatagaaaaaaatgcgtt |
31151893 |
T |
|
| Q |
103 |
tgacaaaaaattcaatgaagtcttaaaaacagcttttccaacatcaaccgcttcaccaattacgctgcttttttctatatcacataaaagctcttgaagc |
202 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| | | ||| | || |||||||||||||||||||||||| |
|
|
| T |
31151892 |
tgacaaaaaattcaatgaagttttaaaaacagcttttccaacatcaacagcttccccaattaagttacttctatcaatatcacataaaagctcttgaagc |
31151793 |
T |
|
| Q |
203 |
ttcttacacctaagtgcatagctagcatcaagagttttgctagaaaacaaatggtttttgcatatttttcttaggtctctccaaagatcgcaaaccggca |
302 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
31151792 |
ttcttacacctaagtgcatggctagcatcaagagttttgctagaaaacaaatggtttttgcatatttttcgtaagtctctccaaagatcgcaaaccggca |
31151693 |
T |
|
| Q |
303 |
taaacggtaagctaaaatgatcatgattgaaaactgtaacagcttgagggactcttctg |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31151692 |
taaacggtaagctaaaatgatcatgattgaaaactgtaacagcttgagggactgttctg |
31151634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 3 - 320
Target Start/End: Complemental strand, 31130145 - 31129828
Alignment:
| Q |
3 |
agtttggagttcctattgctctcacaagattttcaattatacctttgtattcatcagtttctcctgcagagttaacaaaatccatagnnnnnnntgtgtt |
102 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
31130145 |
agtttggagttcctattgccctcacaaggttttcaactatacctttatattcatcagtttcacctgcagagttaacaaaatccatagagaaaaaagtgtt |
31130046 |
T |
|
| Q |
103 |
tgacaaaaaattcaatgaagtcttaaaaacagcttttccaacatcaaccgcttcaccaattacgctgcttttttctatatcacataaaagctcttgaagc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31130045 |
tgacaaaaaattcaatgaagtcttaaaagcagctcttcctacatcaacagcttcaccaattaagctgcttttttctatatcacttaaaagctcttgaagc |
31129946 |
T |
|
| Q |
203 |
ttcttacacctaagtgcatagctagcatcaagagttttgctagaaaacaaatggtttttgcatatttttcttaggtctctccaaagatcgcaaaccggca |
302 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
31129945 |
ttcttacacctaagtgcatggctagcatcaagagtttggctagaaaacaattggtttttgcatatttttcttaggtctctccaaagatcacaaactggca |
31129846 |
T |
|
| Q |
303 |
taaacggtaagctaaaat |
320 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
31129845 |
taaagggtaagctaaaat |
31129828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 8e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 5 - 321
Target Start/End: Original strand, 24484921 - 24485237
Alignment:
| Q |
5 |
tttggagttcctattgctctcacaagattttcaattatacctttgtattcatcagtttctcctgcagagttaacaaaatccatagnnnnnnntgtgtttg |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||| |||| || ||||||||||| |||| ||||||||||||||||||| ||||||| |
|
|
| T |
24484921 |
tttggtgttcctattgctctcacaagattttcaacaatatctttatactcatcagtttcacctgtggagttaacaaaatccatagagaaaaaagtgtttg |
24485020 |
T |
|
| Q |
105 |
acaaaaaattcaatgaagtcttaaaaacagcttttccaacatcaaccgcttcaccaattacgctgcttttttctatatcacataaaagctcttgaagctt |
204 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||| || |||| || | ||| ||||||| | || ||||||| |||||||||||||||||| |
|
|
| T |
24485021 |
acaaaaaattcaatgaagtcttaaaagtagctcttccaacatctactgctttacaagttaagctgcttctatcaatatcacttaaaagctcttgaagctt |
24485120 |
T |
|
| Q |
205 |
cttacacctaagtgcatagctagcatcaagagttttgctagaaaacaaatggtttttgcatatttttcttaggtctctccaaagatcgcaaaccggcata |
304 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||| |||| |||||| |
|
|
| T |
24485121 |
cttacacctaagttcattactagcatcaagtgttttgttagaaaacaaatggtttttgtataatttttttaggtctctccaaagatctgaaactggcata |
24485220 |
T |
|
| Q |
305 |
aacggtaagctaaaatg |
321 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
24485221 |
aagggtaagctaaaatg |
24485237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 3 - 328
Target Start/End: Original strand, 24468420 - 24468745
Alignment:
| Q |
3 |
agtttggagttcctattgctctcacaagattttcaattatacctttgtattcatcagtttctcctgcagagttaacaaaatccatagnnnnnnntgtgtt |
102 |
Q |
| |
|
||||||| |||||||||||| ||| |||| |||||| |||| |||| || ||||||||||| ||||||||||||||||||||||| | ||||| |
|
|
| T |
24468420 |
agtttggtgttcctattgctgtcataagactttcaactatatctttatactcatcagtttcacctgcagagttaacaaaatccatggagaaaaaagtgtt |
24468519 |
T |
|
| Q |
103 |
tgacaaaaaattcaatgaagtcttaaaaacagcttttccaacatcaaccgcttcaccaattacgctgcttttttctatatcacataaaagctcttgaagc |
202 |
Q |
| |
|
|||||||| |||||| ||||||||||| ||||||| ||||||| || |||||||||| | ||| ||| | || |||||||||||||||||||| ||| |
|
|
| T |
24468520 |
tgacaaaacattcaacaaagtcttaaaagcagctttctcaacatccactgcttcaccaaccaagctacttctatcaatatcacataaaagctcttgcagc |
24468619 |
T |
|
| Q |
203 |
ttcttacacctaagtgcatagctagcatcaagagttttgctagaaaacaaatggtttttgcatatttttcttaggtctctccaaagatcgcaaaccggca |
302 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| | | |||| |
|
|
| T |
24468620 |
ttcttacacctaagttcattgctagcatcaagagttttgttagaaaacaaattgtttttgcatatttttcttaggtctctccaaagatttgacattggca |
24468719 |
T |
|
| Q |
303 |
taaacggtaagctaaaatgatcatga |
328 |
Q |
| |
|
|||| |||||||||||||| |||||| |
|
|
| T |
24468720 |
taaatggtaagctaaaatgttcatga |
24468745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 41128301 - 41128230
Alignment:
| Q |
103 |
tgacaaaaaattcaatg-aagtcttaaaaacagcttttccaacatcaaccgcttcaccaattacgctgctttt |
174 |
Q |
| |
|
|||||||||||| |||| ||| ||| ||| ||||| ||||||||||||| ||||||||| ||| ||||||||| |
|
|
| T |
41128301 |
tgacaaaaaatt-aatgcaagccttgaaagcagctcttccaacatcaacagcttcaccagttatgctgctttt |
41128230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 41144380 - 41144451
Alignment:
| Q |
103 |
tgacaaaaaattcaatg-aagtcttaaaaacagcttttccaacatcaaccgcttcaccaattacgctgctttt |
174 |
Q |
| |
|
|||||||||||| |||| ||| ||| ||| ||||| ||||||||||||| ||||||||| ||| ||||||||| |
|
|
| T |
41144380 |
tgacaaaaaatt-aatgcaagccttgaaagcagctcttccaacatcaacagcttcaccagttatgctgctttt |
41144451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1941 times since January 2019
Visitors: 2201