View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_high_67 (Length: 361)
Name: NF0154_2D_high_67
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_high_67 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 51 - 288
Target Start/End: Complemental strand, 35113763 - 35113524
Alignment:
| Q |
51 |
atggtctcatcctttttgtt-tattttatagggtgctgtaaattcaagcaactatatttgtagataaatgatcattttacattattttttcgggggatca |
149 |
Q |
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| T |
35113763 |
atggtctcatcctttttgttatattttataaggtgttgtaaattcaagcaactatatttgtaaataaatgatcattttacattattttttagggggatca |
35113664 |
T |
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| Q |
150 |
tgttacattgttgccatggcatgtatacatacctgatnnnnnnngtgaca--cttatacggatgtttgacatcaatatttgacaataggatttgcaaaga |
247 |
Q |
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| T |
35113663 |
tgttacattgttgccatgacatgtatacatacctgat-aaaaaagtgacactcttatacggatgtttgacatcaatatttgacaataggatttgcaaaga |
35113565 |
T |
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| Q |
248 |
acaaatatgtggttaattatgttcttgccttgttctttcat |
288 |
Q |
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| T |
35113564 |
acaaatgtgtggttaattatgttcttgccttgttctttcat |
35113524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 345
Target Start/End: Complemental strand, 35113477 - 35113443
Alignment:
| Q |
311 |
agttgtatgtgttttagttgatttttactccttca |
345 |
Q |
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| T |
35113477 |
agttgtatgtgttttagttgatttttactccttca |
35113443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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