View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_high_7 (Length: 842)
Name: NF0154_2D_high_7
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 391 - 830
Target Start/End: Original strand, 5242523 - 5242955
Alignment:
| Q |
391 |
attttctctacgaactttaatcaaatcatgcatcaaacacaaagtaaaaagtgcaattgcattgtgagagaaccgcaaccatgaaaattcactaagctct |
490 |
Q |
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| T |
5242523 |
attttctctac-aactttaatcaaatcatgcatcaaaaacaaagtaaaaagtgcaattgcattgtgagagaaccgcaaccatgaaaattcactaagctct |
5242621 |
T |
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| Q |
491 |
agacctcgtacgtgtcattgacatagttccaaaaacatgcgtgtcttgtttctaaattagccgcgtctgtaatccacgtgtcagttcataaccactctta |
590 |
Q |
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| T |
5242622 |
agacctcgtacgtgtcattgatatagttccaaaaacatgcgtgtcttgtttctaaattagccgcgtctgtaatccacgtgtcagttcataaccactctta |
5242721 |
T |
|
| Q |
591 |
ctgttccttttttaccttgttgtcatcttctcaaatatttaccactctaaaaatattatcatgtcatgcaacattatttatttaatttatttgtcacatt |
690 |
Q |
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| T |
5242722 |
ctgttccttttttaccttgttgtcatcttctcaaatatttaccactctaaaaatattatcatgtcatgcaacattatttatttaatttatttgtcacatt |
5242821 |
T |
|
| Q |
691 |
ttgatacatatctatataaaccccttaaccatttgttttaaccacatagcttcgagtacttactgatcaagaaagtgacactacatagcataatcaacca |
790 |
Q |
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| T |
5242822 |
ttg----atatctatataaaccccttaaccatttattttaaccac--agcttcgagtacttactgatcaagaaagtgacactacatagcataatcaacca |
5242915 |
T |
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| Q |
791 |
atccaaatttgagaaaaaacaatggcatctaaacaccaaa |
830 |
Q |
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| T |
5242916 |
atccaaatttgagaaaaaacaatggcatctaaacaacaaa |
5242955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 25 - 359
Target Start/End: Original strand, 5242193 - 5242527
Alignment:
| Q |
25 |
tatgtaacattgggctacttaaatgttgttccatta-tattatataatgatatgatatggtattatggttaactaaaccctacagcttagacgacagaca |
123 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5242193 |
tatgtaacattgggctacttaaatgttgttccattagtattatat--------gatatggtattatggttaactaaaccctacagcttagacgacaaaca |
5242284 |
T |
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| Q |
124 |
gagtgattatatcaatctgtcaaatccttcaacggttaatttcaaaatatatgtattctaaatcatctattcaacttaaacaatgttcaatgatttagaa |
223 |
Q |
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| T |
5242285 |
aagtgattatatcaatct---------ttcaacggttaatttcaaaatatatgtattctaaatcatctattcaacttaaacaatgttcaatgatttagaa |
5242375 |
T |
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| Q |
224 |
tattacacatattttggtatcatctcttaactaaatattacaaaaacaacttgtgaactattatccttgatttgtaacctctatta-------------- |
309 |
Q |
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| T |
5242376 |
tattacacatattttggtatcatctcttaactaaatattacaaaaacaacttgtgaactattatccttgatttgtaacctctattaaacatgtttaaatg |
5242475 |
T |
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| Q |
310 |
--tccacaatcaaaccattaaattacaacagctgaaacatgttaaatatttt |
359 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5242476 |
tctccacaatgaaaccattaaattacaacagctgaaacatgttaaatatttt |
5242527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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