View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_high_71 (Length: 357)
Name: NF0154_2D_high_71
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_high_71 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 37150849 - 37151193
Alignment:
| Q |
1 |
tagcccgtccatggaagaacttctcaaggactatcatcatggatacattcatcgatgatttgattcatcccgatggttttttgccatggcatacagaaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37150849 |
tagcccgtccatggaagaacttctcaaggactatcatcatggatacattcatcgatgatttgattcatcccgatggttttttgccatggcatacagaaga |
37150948 |
T |
|
| Q |
101 |
ggggcctattaatatggacacttgctactatgctgaataccataactatggccctggttcagacaaatttaagcgtgtgaaatgggctggaatctataac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37150949 |
ggggcctattaatatggacacttgctactatgctgaataccataactatggccctggttcagacaaatcaaagcgtgtgaaatgggctggaatctataac |
37151048 |
T |
|
| Q |
201 |
atcaatacaaaggctgcacaaaagtttgcaccatccaagttcttccatggtggtgactggattaaggacactggaattccttactatccaaatataccgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37151049 |
atcaatacaaaggctgcacaaaagtttgcaccatccaagttcttccatggtggtgactggattaaggacactggaattccttactatccaaatataccgg |
37151148 |
T |
|
| Q |
301 |
aacacaagaagcacgaaaagacagtgcctaaatggtgatcttgat |
345 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37151149 |
aacacaagaagcacgaaaagacagtgcctaaatggtgatcttgat |
37151193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 37159674 - 37160018
Alignment:
| Q |
1 |
tagcccgtccatggaagaacttctcaaggactatcatcatggatacattcatcgatgatttgattcatcccgatggttttttgccatggcatacagaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37159674 |
tagcccgtccatggaagaacttctcaaggactatcatcatggatacattcatcgatgatttgattcatcccgatggttttttgccatggcatacagaaga |
37159773 |
T |
|
| Q |
101 |
ggggcctattaatatggacacttgctactatgctgaataccataactatggccctggttcagacaaatttaagcgtgtgaaatgggctggaatctataac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37159774 |
ggggcctattaatatggacacttgctactatgctgaataccataactatggccctggttcagacaaatcaaagcgtgtgaaatgggctggaatctataac |
37159873 |
T |
|
| Q |
201 |
atcaatacaaaggctgcacaaaagtttgcaccatccaagttcttccatggtggtgactggattaaggacactggaattccttactatccaaatataccgg |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37159874 |
atcaatacaaaggctgcacaaaagtttgcaccatccaagttcttccatggtggtgactggattaaggacactggaattccttactatccaaatataccgg |
37159973 |
T |
|
| Q |
301 |
aacacaagaagcacgaaaagacagtgcctaaatggtgatcttgat |
345 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37159974 |
aacacaagaagcacgaaaagacagtgcctaaatggtgatcttgat |
37160018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 37154528 - 37154182
Alignment:
| Q |
1 |
tagcccgtccatggaagaacttctcaaggactatcatcatggatacattcatcgatgatttgattcatcccgatggttttttgccatggcatacagaaga |
100 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37154528 |
tagcccgtccatggaagaatttctctaggactatcatcatggatacattcatcgatgatttgattcatcccgatggtttttttccatggcatacagaagt |
37154429 |
T |
|
| Q |
101 |
ggggcctattaatatggacacttgctactatgctgaataccataactatggccctggttcagacaaatttaagcgtgtgaaatgggctggaatctataac |
200 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
37154428 |
ggggcctattaacatggacacttgcttctatgctgaataccataactatggccctggttcaaacaaatcaaagcgtgtgaaatgggctggaatctataac |
37154329 |
T |
|
| Q |
201 |
atcaatacaaaggctgcacaaaagtttgcaccatccaagttcttccatggtggtgactggattaaggacactggaattccttactatccaaatataccgg |
300 |
Q |
| |
|
|||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |
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| T |
37154328 |
atcaattcaaaggctgcacataggtttgcaccatccaagttcttccatggtggtgactggattaaggacactggaattccttactttccaactatacctg |
37154229 |
T |
|
| Q |
301 |
aacacaagaagcacgaaaagacagtgcctaaatggtgatcttgatgt |
347 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
37154228 |
aacacaagaagcacaaaaagacagtgcttaaatggtgatcttgatgt |
37154182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 91620 - 91276
Alignment:
| Q |
1 |
tagcccgtccatggaagaacttctcaaggactatcatcatggatacattcatcgatgatttgattcatcccgatggttttttgccatggcatacagaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
91620 |
tagcccgtccatggaagaacttctcaaggactatcatcatggatacattcatcgatgatttgattcatcccgatggttttttgccatggcatacagaaga |
91521 |
T |
|
| Q |
101 |
ggggcctattaatatggacacttgctactatgctgaataccataactatggccctggttcagacaaatttaagcgtgtgaaatgggctggaatctataac |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
91520 |
gggacctattaatatggacacttgctactatgttgaataccataactatggccctggttcagacaaatcaaagcgtgtgaaatgggctggaatctataac |
91421 |
T |
|
| Q |
201 |
atcaatacaaaggctgcacaaaagtttgcaccatccaagttcttccatggtggtgactggattaaggacactggaattccttactatccaaatataccgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
91420 |
atcaatacaaaggctgcacaaaagtttgcaccatccaagttcttccatggtggtgactggattaaggacactggaattccttactatccaaatataccgg |
91321 |
T |
|
| Q |
301 |
aacacaagaagcacgaaaagacagtgcctaaatggtgatcttgat |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91320 |
aacacaagaagcacgaaaagacagtgcctaaatggtgatcttgat |
91276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 94927 - 94583
Alignment:
| Q |
1 |
tagcccgtccatggaagaacttctcaaggactatcatcatggatacattcatcgatgatttgattcatcccgatggttttttgccatggcatacagaaga |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
94927 |
tagcctgtccatggaagaacttctcaaggactatcatcatggatacattcatcgatgatttgattcatcccgatggttttttgccatggcatacagaaga |
94828 |
T |
|
| Q |
101 |
ggggcctattaatatggacacttgctactatgctgaataccataactatggccctggttcagacaaatttaagcgtgtgaaatgggctggaatctataac |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
94827 |
gggacctattaatatggacacttgctactatgttgaataccataactatggccctggttcagacaaatcaaagcgtgtgaaatgggctggaatctataac |
94728 |
T |
|
| Q |
201 |
atcaatacaaaggctgcacaaaagtttgcaccatccaagttcttccatggtggtgactggattaaggacactggaattccttactatccaaatataccgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
94727 |
atcaatacaaaggctgcacaaaagtttgcaccatccaagttcttccatggtggtgactggattaaggacactggaattccttactatccaaatataccgg |
94628 |
T |
|
| Q |
301 |
aacacaagaagcacgaaaagacagtgcctaaatggtgatcttgat |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
94627 |
aacacaagaagcacgaaaagacagtgcctaaatggtgatcttgat |
94583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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