View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0154_2D_high_74 (Length: 351)
Name: NF0154_2D_high_74
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0154_2D_high_74
Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 26832582 - 26832893
Alignment:
Q
18
cgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagcatcaaagatagcaa
117
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
26832582
cgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagcatcaaagatagcaa
26832681
T
Q
118
cataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcatactttatattcac
217
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
26832682
cataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcatactttatattcac
26832781
T
Q
218
acctttgcttctccatctacggcattctacttgtaccaactcctgcattttttgtttgttcatttgccacaatcattcacaatcaccttttaatacaaac
317
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
26832782
acctttgcttctccatctacggcattctacttgtaccaactcctgcattttttgtttgttcatttgccacaatcattcacaatcaccttttaatacaaac
26832881
T
Q
318
ttaaccctatca
329
Q
||||||||||||
T
26832882
ttaaccctatca
26832893
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 26785864 - 26786160
Alignment:
Q
18
cgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagcatcaaagatagcaa
117
Q
||||||||||| |||||||| ||||||||||| ||||||||||| |||||| | || || ||||||||||| ||||||||||||||||||||||| ||||
T
26785864
cgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaatcagcatcaaagatggcaa
26785963
T
Q
118
cataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcatactttatattcac
217
Q
|||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| |||||
T
26785964
catattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcatactttatgttcac
26786063
T
Q
218
acctttgcttctccatctacggcattctacttgtaccaactcctgcattttttgtttgttcatttgccacaatcattcacaatcaccttttaatacaaa
316
Q
||||||| ||| |||||||||||||||| | |||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||||||
T
26786064
acctttgtttcgccatctacggcattcttcctgtaccaactcctgcaattttt-tttgttcacttgccacaatcattcacaatcacc-tttaatacaaa
26786160
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 26791604 - 26791856
Alignment:
Q
18
cgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagcatcaaagatagcaa
117
Q
||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
T
26791604
cgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcaggttcaggttgaaaatcagcatcaaagatggcaa
26791703
T
Q
118
cataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcatactttatattcac
217
Q
|||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| |||||
T
26791704
catattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcatactttatgttcac
26791803
T
Q
218
acctttgcttctccatctacggcattctacttgtaccaactcctgcatttttt
270
Q
||||||| ||| |||||||||||||||| | ||||| ||||||||||||||||
T
26791804
acctttgtttcgccatctacggcattcttcctgtacaaactcctgcatttttt
26791856
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 26822505 - 26822749
Alignment:
Q
18
cgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagcatcaaagatagcaa
117
Q
||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||| | ||||| |||||||| ||||||||||||||||||||||| ||||
T
26822505
cgagcctgaacgagaccaatttcaggattattgacaagaaaagggatcgttcggcggagaaagtcaggttcaggttgaaaatcagcatcaaagatggcaa
26822604
T
Q
118
cataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcatactttatattcac
217
Q
|||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| |||||
T
26822605
catattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcatactttatgttcac
26822704
T
Q
218
acctttgcttctccatctacggcattctacttgtaccaactcctg
262
Q
||||||| ||| |||||||||||||||| | |||||||| |||||
T
26822705
acctttgtttcgccatctacggcattcttcctgtaccaattcctg
26822749
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 90 - 235
Target Start/End: Complemental strand, 41546352 - 41546207
Alignment:
Q
90
ggttgaaaatcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctat
189
Q
||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||| |||||||| || || | ||||| |||||||||||||||||||
T
41546352
ggttgaaaatcagcatcaaagatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttctat
41546253
T
Q
190
tgtccctaacttcatactttatattcacacctttgcttctccatct
235
Q
| ||||| | ||||||||||| || | ||||| |||||||||||
T
41546252
tttcccttatctcatactttatgtttatgccttttcttctccatct
41546207
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 77 - 270
Target Start/End: Complemental strand, 41917589 - 41917396
Alignment:
Q
77
aaaatcaggttctggttgaaaatcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttg
176
Q
||||||||| ||||||||||||||||||||||| || ||||||| ||||||||| |||||||||||||| |||||||| || ||||| || |||||||||
T
41917589
aaaatcaggctctggttgaaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttg
41917490
T
Q
177
taaccatttctattgtccctaacttcatactttatattcacacctttgcttctccatctacggcattctacttgtaccaactcctgcatttttt
270
Q
|| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| ||| |||||||||| ||||||||
T
41917489
tatccatttctattgtccctaacttcatactttatattcactcctttgcttgcccatctttggcattctagttgcaccaactcctacatttttt
41917396
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 20239064 - 20239218
Alignment:
Q
24
tgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagcatcaaagatagcaacataat
123
Q
||||||||| |||| ||||||||| |||||| ||||| |||| || | |||||||||||| || ||||||||||||||| || ||||||| |
T
20239064
tgaacaagagcaatttcaggattaccaacaagaaaaggaatggctcttctaagaaaatcaggaggaggactaaaatcagcatcaaatatgacaacatatt
20239163
T
Q
124
cacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgta
178
Q
|||| || || ||||||||| |||| | ||| || || |||||||||||||||||
T
20239164
cacaatgcttgacatagctacgttttagtccttctttcaatgcacctgctttgta
20239218
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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