View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_high_80 (Length: 340)
Name: NF0154_2D_high_80
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_high_80 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 53880260 - 53880104
Alignment:
| Q |
1 |
taaagagtaatataggttcaaaagaaggcgagccataatgaataatgctatggtcactcactcaatcactctccaacaaacactttttatgtgtatggtg |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
53880260 |
taaagagta-tataggttcaaaagaaggcgagccataatgaataatgctatggtcactcactcaaacactctccaacaaacactttttatgtgtatggtg |
53880162 |
T |
|
| Q |
101 |
ccacgttttcacttatttatctacttaccttgtttatcggcatttaaagaatgaaatg |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
53880161 |
ccacgttttcacttatttatctacttaccttgtttaccggcatttaaagaatgaaatg |
53880104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 53886374 - 53886218
Alignment:
| Q |
1 |
taaagagtaatataggttcaaaagaaggcgagccataatgaataatgctatggtcactcactcaatcactctccaacaaacactttttatgtgtatggtg |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
53886374 |
taaagagta-tataggttcaaaagaaggcgagccataatgaataatgctatggtcactcactcaaacactctccaacaaacactttttatgtgtatggtg |
53886276 |
T |
|
| Q |
101 |
ccacgttttcacttatttatctacttaccttgtttatcggcatttaaagaatgaaatg |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
53886275 |
ccacgttttcacttatttatctacttaccttgtttaccggcatttaaagaatgaaatg |
53886218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 195 - 340
Target Start/End: Complemental strand, 53880074 - 53879928
Alignment:
| Q |
195 |
attattggcatctcaaaagccaagccatctctgcaaacggaccgccgctgccgtatacaagtctcaatatttaatcgtgcatggagaaaagcttgcacaa |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
53880074 |
attattggcatctcaaaagccaagccatctctgcaaacggaccgccactgccatatacaagtctcaatatttaatcctgcatggagaaaagcttacacaa |
53879975 |
T |
|
| Q |
295 |
ccgcc-atgttcaaatcttcaattattaattgtataaatcaaagcat |
340 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53879974 |
ctacctatgttcaaatcttcaattattaattgtataaatcaaagcat |
53879928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 195 - 340
Target Start/End: Complemental strand, 53886188 - 53886042
Alignment:
| Q |
195 |
attattggcatctcaaaagccaagccatctctgcaaacggaccgccgctgccgtatacaagtctcaatatttaatcgtgcatggagaaaagcttgcacaa |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
53886188 |
attattggcatctcaaaagccaagccatctctgcaaacggaccgccactgccatatacaagtctcaatatttaatcctgcatggagaaaagcttacacaa |
53886089 |
T |
|
| Q |
295 |
ccgcc-atgttcaaatcttcaattattaattgtataaatcaaagcat |
340 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53886088 |
ctacctatgttcaaatcttcaattattaattgtataaatcaaagcat |
53886042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2016 times since January 2019
Visitors: 2203