View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_high_85 (Length: 326)

Name: NF0154_2D_high_85
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_high_85
NF0154_2D_high_85
[»] chr2 (7 HSPs)
chr2 (119-310)||(18542369-18542561)
chr2 (122-266)||(18555430-18555575)
chr2 (122-278)||(18550452-18550609)
chr2 (2-88)||(18542264-18542350)
chr2 (2-89)||(18555321-18555408)
chr2 (20-89)||(18550361-18550430)
chr2 (258-310)||(18555865-18555917)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 119 - 310
Target Start/End: Original strand, 18542369 - 18542561
Alignment:
Q  119 atcaaataataaaataggttggg-atatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacggaatcaagggccttcatgaaat 217  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18542369 atcaaataataaaataggttggggatatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacgaaatcaagggccttcatgaaat 18542468  T
Q  218 ccagatgaatgaatgtgtctattcctttccattaagtatgtaaaataaaaccataaactctcttttattccttgtctaatctataatatgatg 310  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18542469 ccagatgaatgaatgtgtctattcctttctattaagtatgtaaaataaaaccataaactctcttttattccttgtctagtctataatatgatg 18542561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 122 - 266
Target Start/End: Original strand, 18555430 - 18555575
Alignment:
Q  122 aaataataaaataggttggg-atatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacggaatcaagggccttcatgaaatcca 220  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18555430 aaataataaaataggttggggatatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaagggaatcaagggccttcatgaaatcca 18555529  T
Q  221 gatgaatgaatgtgtctattcctttccattaagtatgtaaaataaa 266  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  18555530 gatgaatgaacgtgtctattcctttccattaagtatgtaaaataaa 18555575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 122 - 278
Target Start/End: Original strand, 18550452 - 18550609
Alignment:
Q  122 aaataataaaataggttggg-atatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacggaatcaagggccttcatgaaatcca 220  Q
    ||||||||| || ||||||| |||||||||||||| || |||||||| | ||||||||||||||||||||||| ||||||||| |||| |||||||||||    
T  18550452 aaataataatattggttggggatatttgaaaaattagggaggttacaattgtgacataagtagcaaaagtgaagggaatcaagagcctccatgaaatcca 18550551  T
Q  221 gatgaatgaatgtgtctattcctttccattaagtatgtaaaataaaaccataaactct 278  Q
    ||||||||||||||||||||| || |||| ||| ||||||||||||||||||||||||    
T  18550552 gatgaatgaatgtgtctattcattcccataaagcatgtaaaataaaaccataaactct 18550609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 18542264 - 18542350
Alignment:
Q  2 gcacaggaggaaatggcagtgaaggaggtgcacaaggtggaggtggacaaatcgaaggtggaaacgataaagaaagtgaacttgatg 88  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18542264 gcacaggaggaaatggtagtgaaggaggtgcacaaggtggaggtgaacaaatcgaaggtggaaacgataaagaaagtgaacttgatg 18542350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 18555321 - 18555408
Alignment:
Q  2 gcacaggaggaaatggcagtgaaggaggtgcacaaggtggaggtggacaaatcgaaggtggaaacgataaagaaagtgaacttgatgc 89  Q
    ||||||||||||||||| |||||||||||||||||||||||||| || |||||  ||||||||  || |||||||||| |||||||||    
T  18555321 gcacaggaggaaatggcggtgaaggaggtgcacaaggtggaggtagaaaaatcagaggtggaagtgacaaagaaagtggacttgatgc 18555408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 18550361 - 18550430
Alignment:
Q  20 gtgaaggaggtgcacaaggtggaggtggacaaatcgaaggtggaaacgataaagaaagtgaacttgatgc 89  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||| |||||||||    
T  18550361 gtgaaggaggtgcgcaaggtggaggtggacaaatcgaaggtggaaaagacaaaggaagtggacttgatgc 18550430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 18555865 - 18555917
Alignment:
Q  258 taaaataaaaccataaactctcttttattccttgtctaatctataatatgatg 310  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  18555865 taaaataaaaccataaactcttttttattccttgtctagtctataatatgatg 18555917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1917 times since January 2019
Visitors: 2200