View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_high_90 (Length: 320)
Name: NF0154_2D_high_90
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_high_90 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 702992 - 703292
Alignment:
| Q |
19 |
cattcctggtgtcattgatatccacacaaaagtcctgtaaagggctgggatcaaaggcaaatgcacaaggtactaaagctaagaaggctgtcacaaacaa |
118 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| |
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| T |
702992 |
cattcttggtgtcattgatagccacacaaaagtcctgtaaagggctgggatcaaaggcaaaggcacaagatgctaaagctaagaaggctgtcacaaacaa |
703091 |
T |
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| Q |
119 |
gattgaagtcttcatgnnnnnnnnggaacaattcaatttatgtattttgcttgtatatggttggttatgcaaacatggtgtctttttataagcaagtgtg |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
703092 |
gattgaagtcttcatgttttttt-ggaacaattcaatttatgtattttgcttgtatatggttggttatgcaaacatggtgtctatttataagcaagtgtg |
703190 |
T |
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| Q |
219 |
acattggaatagttttacttgcacaaagcctataaagaccaagtaaatcttaattaatcaaagcagcgtataannnnnnnattattagatgaattattct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
703191 |
acattggaatagttttacttgcacaaagcctataaagaccaagtaaatcttaattaatcaaagcagcgtataatttttttattattagatgaattattct |
703290 |
T |
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| Q |
319 |
tt |
320 |
Q |
| |
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|| |
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| T |
703291 |
tt |
703292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 712446 - 712146
Alignment:
| Q |
19 |
cattcctggtgtcattgatatccacacaaaagtcctgtaaagggctgggatcaaaggcaaatgcacaaggtactaaagctaagaaggctgtcacaaacaa |
118 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| |
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| T |
712446 |
cattcttggtgtcattgatagccacacaaaagtcctgtaaagggctgggatcaaaggcaaaggcacaagatgctaaagctaagaaggctgtcacaaacaa |
712347 |
T |
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| Q |
119 |
gattgaagtcttcatgnnnnnnnnggaacaattcaatttatgtattttgcttgtatatggttggttatgcaaacatggtgtctttttataagcaagtgtg |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
712346 |
gattgaagtcttcatgttttttt-ggaacaattcaatttatgtattttgcttgtatatggttggttatgcaaacatggtgtctatttataagcaagtgtg |
712248 |
T |
|
| Q |
219 |
acattggaatagttttacttgcacaaagcctataaagaccaagtaaatcttaattaatcaaagcagcgtataannnnnnnattattagatgaattattct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
712247 |
acattggaatagttttacttgcacaaagcctataaagaccaagtaaatcttaattaatcaaagcagcgtataatttttttattattagatgaattattct |
712148 |
T |
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| Q |
319 |
tt |
320 |
Q |
| |
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|| |
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|
| T |
712147 |
tt |
712146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 718285 - 718385
Alignment:
| Q |
19 |
cattcctggtgtcattgatatccacacaaaagtcctgtaaagggctgggatcaaaggcaaatgcacaaggtactaaagctaagaaggctgtcacaaacaa |
118 |
Q |
| |
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||||| |||||||||||||| ||||||||||||| |||| ||||||||||||||||||||| ||||| | | |||| || |||||||||||||||||||| |
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| T |
718285 |
cattcttggtgtcattgatagccacacaaaagtcttgtagagggctgggatcaaaggcaaaggcacatgatgctaaggccaagaaggctgtcacaaacaa |
718384 |
T |
|
| Q |
119 |
g |
119 |
Q |
| |
|
| |
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| T |
718385 |
g |
718385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 711258 - 711352
Alignment:
| Q |
25 |
tggtgtcattgatatccacacaaaagtcctgtaaagggctgggatcaaaggcaaatgcacaaggtactaaagctaagaaggctgtcacaaacaag |
119 |
Q |
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|||||||||||||| ||||||||||||| |||| |||||| |||||||| ||||| ||||||| | | || |||| ||||||||| | ||||||| |
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| T |
711258 |
tggtgtcattgatagccacacaaaagtcttgtagagggctaggatcaaatgcaaaggcacaagatgccaatgctaggaaggctgtgaaaaacaag |
711352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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