View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_high_94 (Length: 313)
Name: NF0154_2D_high_94
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_high_94 |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 177 - 294
Target Start/End: Original strand, 34300382 - 34300499
Alignment:
| Q |
177 |
aatttatgattcatgctatgtgcctatgctagttgatcttctagtcaatgagattaatacactgccggtgttaaaaaattacgccaccaacaaattacac |
276 |
Q |
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| T |
34300382 |
aatttatgattcatgctatgtgcctatgctagttgctcttctagtcaatgagattaatacactgtcggtgttaaaaaattacgccgccaacaaattacac |
34300481 |
T |
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| Q |
277 |
tgaaccatatatgtgact |
294 |
Q |
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| T |
34300482 |
tgaaccatatatgtgact |
34300499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 34300218 - 34300306
Alignment:
| Q |
16 |
ttggtgttaggcaatggcccaagtaaaaaccacatttcttcattatcttgttactttttaccttatcaggtttattattctaatgaaac |
104 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34300218 |
ttggtgttagacaatggcccaagtaaaaaccacatttcttcattatcttgttactttttaccttatcaggtttattattctaatgaaac |
34300306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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