View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_10 (Length: 997)
Name: NF0154_2D_low_10
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_10 |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 611 - 980
Target Start/End: Original strand, 24567698 - 24568067
Alignment:
| Q |
611 |
cttccactaattagttcatgtgacgactaagtctgaaactagttttcgtatctattctaatatccgacatgtattgaatccattatcattaatgaaatga |
710 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24567698 |
cttccactaattagttcatgtgacgactaagtctaaaactaattttcgtatctattctaatattcgacatgtattgaatccattatcattaatgaaatga |
24567797 |
T |
|
| Q |
711 |
gttaagtttgttactcgaaatnnnnnnngagctcatgtgacgacttgaggattcattgttataccatgattgatcgattgttcgtgatattttgaaacaa |
810 |
Q |
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| T |
24567798 |
gttaagtttgttactcgaaataaaaaaagagctcatgtgacgacttgaggattcattgttataccatgattgatcgattgttcgcgatattttgaaacaa |
24567897 |
T |
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| Q |
811 |
tcactattcttaatggcctccctcaaacttgagtatgaattgcaaagttaattacatagggaaattatgttataacttgaattgaatcattgttaaaatg |
910 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24567898 |
tcactattcttaatggcctccctcaaacttgagtatgaattgcaaagttaattacataggaaaattatgttataacttgaattgaatcattgttaaaatg |
24567997 |
T |
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| Q |
911 |
tcataagaatagtagtagtataggataataaatatgttacacaaaagggaaccattttgcagaatattct |
980 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24567998 |
tcataagaatagtagtagtataggataataaatatgttgcacaaaagggaaccattttgcagaatattct |
24568067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 24567115 - 24567327
Alignment:
| Q |
14 |
agattattctatgatttatgggtagctttaagagtcaataaaagttcagctctaaatttaatgctgctctagtctaaagtttcatggctatcagcagtta |
113 |
Q |
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| T |
24567115 |
agattcttctatgatttatgggtagctttaagagtcaataaaagttcagctctaaatttaatgctgctctagtctaaagtttcatggctatcagcactta |
24567214 |
T |
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| Q |
114 |
cctatgcacattatttgtgaagaaaagtttatataaaagttggcacaatctttctggtgatcctttaacttggtctaaaataaattatatatgtacacga |
213 |
Q |
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| T |
24567215 |
cctatgcacattatttgtgaagaaaagtttatataaaagttggcacaatctttctggtgatcctttaacttggtctaaaataaattatatatgtacacga |
24567314 |
T |
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| Q |
214 |
ttgattcttcatg |
226 |
Q |
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||||||||||||| |
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| T |
24567315 |
ttgattcttcatg |
24567327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 268 - 550
Target Start/End: Original strand, 24567369 - 24567637
Alignment:
| Q |
268 |
aatgcaaacatctagattctatctttactggtatagtaatatatggtgaggtgagttaaccttaagaatatgcatataaatccctgtctccatccacatg |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24567369 |
aatgcaaacatctagattctatctttactggtatagtaatatatggtgaggtgagttaaccttaagaatatgcatataaatccctctctccatccacatg |
24567468 |
T |
|
| Q |
368 |
cactattgaatttaaatgctctattgaattcaactggtatttgtacctttgatatgggttttactaatttggatcatttgtctgcatgcatatataattt |
467 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24567469 |
cactat------------------tgaattcaactggtatctgtacctttgatatgggttttactaatttggatcatttgtctgcatgcatatataattt |
24567550 |
T |
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| Q |
468 |
gcccgttg----gattagtctaatattggctttaagttttattctcgccaagaattgacaaagaattcattttgatgatttgtttct |
550 |
Q |
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| T |
24567551 |
gcccgttggattgattagtctaatattggctttaagttttattctcgccaaggattgacaaagaattcattttgatgatttgtttct |
24567637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 693 - 722
Target Start/End: Original strand, 30934 - 30963
Alignment:
| Q |
693 |
ttatcattaatgaaatgagttaagtttgtt |
722 |
Q |
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| T |
30934 |
ttatcattaatgaaatgagttaagtttgtt |
30963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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