View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_100 (Length: 414)
Name: NF0154_2D_low_100
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_100 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 394
Target Start/End: Complemental strand, 18444897 - 18444525
Alignment:
| Q |
14 |
ttcttttaataaattcacaatgactctcaaaaggctttttatgttgacgattgttatccgattaacatggatgggaagtaaaggctggtgaggct----a |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || |||||||| | |
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| T |
18444897 |
ttcttttaataaattcacaatgactctcaaaaggctttttatgttgacgattgttatccgattcacatggatgggaagtaaggacttgtgaggctggcta |
18444798 |
T |
|
| Q |
110 |
ttttgcatggcacgttcatgtgtgagcacatttgtgaagttttcaaatagcaggaggcacaaaacagacgtggaaggtttacatttcttccaagatgtag |
209 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18444797 |
ttttgcgcggcacgttcatgtgtgcgcacatttgtgaagttttcaaatagcaggaggcacaaaacagacgccgaaggtttacatttcttccaagatgtag |
18444698 |
T |
|
| Q |
210 |
tttcttctcttggttgcttgatgtttcttcctttttactgacttggcctattttaataccagatatagcaaagaaaattgcagtaatttgtttgatatca |
309 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18444697 |
tttcttcttttggttgcttgatgtttcttcctttttactgacttggcctattttaataccagatatagcaaagaaaattgcagtaatttgtttgatatca |
18444598 |
T |
|
| Q |
310 |
atgctcgtgttaaccatatgaatagattggtcgagggacatgcccgatatgtcattgcttctactacatatggaaatgtgtctag |
394 |
Q |
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| T |
18444597 |
atgctcgtgttaaccatatg------------gagggacatgcccgatatgtcattgcttctactacatatggaaatgtgtctag |
18444525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 394
Target Start/End: Complemental strand, 33486889 - 33486509
Alignment:
| Q |
14 |
ttcttttaataaattcacaatgactctcaaaaggctttttatgttgacgattgttatccgattaacatggatgggaagtaaaggctggtgaggctatttt |
113 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| ||| |||| | ||||| ||||||||| |||||||| |
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| T |
33486889 |
ttcttttaataaattcacaatgactctcaaaaagctttttatgttgacgtttgttatctgattcacagggattcggagtaagggctggtgaagctatttt |
33486790 |
T |
|
| Q |
114 |
gcatggcacgttcatgtgtgagcacatttgtgaagttttcaaatagcaggaggcacaaaacagacgtggaaggtttacatttcttccaagatgtagtttc |
213 |
Q |
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|| ||||||||| |||||||| ||||| |||||||||| | ||||||||||||| |||||||| ||||||||||||||| |||||||| ||| |||| |
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| T |
33486789 |
gcgtggcacgtttgtgtgtgagtacattggtgaagttttagagcagcaggaggcacacaacagacgcggaaggtttacatttattccaagacgtaatttc |
33486690 |
T |
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| Q |
214 |
ttctcttggttgcttgatgtttcttcctttttactgacttggcctattttaataccagatatagcaaagaaaattgcagtaatttgtttgatatcaatgc |
313 |
Q |
| |
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|||| ||| ||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| |||| || || || |||| |
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| T |
33486689 |
ttcttttgtttgcttgatgtttcttcctttttgctgacttggcctgttttaataccaaatatagcaaagaaaattgcagttatttcttagacattgatgc |
33486590 |
T |
|
| Q |
314 |
tcgtgttaaccatatgaatagattggtcgagggacatgcccgatatgtcattgcttctactacatatggaaatgtgtctag |
394 |
Q |
| |
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| T |
33486589 |
tcgtgctaaccatacgagtagattggtcgaaggacatccccgatatgtcattgattctactacatatggaaatgtgtctag |
33486509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 82 - 394
Target Start/End: Complemental strand, 33515176 - 33514867
Alignment:
| Q |
82 |
ggatgggaagtaaaggctggtgaggctattttgcatggcacgttcatgtgtgagcacatttgtgaagttttcaaatagcaggaggcacaaaacagacgtg |
181 |
Q |
| |
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||||||| |||| |||| |||||||||||| || ||||| || |||||||| ||||| | || ||||| | |||| ||||||| |||||||||| |
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| T |
33515176 |
ggatggggtgtaagggcttgtgaggctatttcgcgcggcacatttgtgtgtgagtacattggagaggttttagacgagcaagaggcacgcaacagacgtg |
33515077 |
T |
|
| Q |
182 |
gaaggtttacatttcttccaagatgtagtttcttctcttggttgcttgatgtttcttcctttttactgacttggcctattttaataccagatatagcaaa |
281 |
Q |
| |
|
|||||||||||||||| |||||| || |||| | || |||| |||||| ||||| ||||||||||| ||| || | | |||||||||||| | ||| |
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| T |
33515076 |
aaaggtttacatttctttcaagatataatttcat---ttagttggttgatgattcttaatttttactgacatggtctgtgtcaataccagatatggaaaa |
33514980 |
T |
|
| Q |
282 |
gaaaattgcagtaatttgtttgatatcaatgctcgtgttaaccatatgaatagattggtcgagggacatgcccgatatgtcattgcttctactacatatg |
381 |
Q |
| |
|
||| ||||| | |||| | |||| | ||||||||||||| |||||| | ||||| |||| || | || ||||||||||||| |||||||| ||||| |
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| T |
33514979 |
gaacattgcgattatttctatgatgttgatgctcgtgttaatgatatgagtcgattgatcgaaagagaggctcgatatgtcattgattctactagatatg |
33514880 |
T |
|
| Q |
382 |
gaaatgtgtctag |
394 |
Q |
| |
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||||||||||||| |
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| T |
33514879 |
gaaatgtgtctag |
33514867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 82 - 392
Target Start/End: Complemental strand, 55444641 - 55444334
Alignment:
| Q |
82 |
ggatgggaagtaaaggctggtgaggctattttgcatggcacgttcatgtgtgagcacatttgtgaagttttcaaatagcaggaggcacaaaacagacgtg |
181 |
Q |
| |
|
||||||| |||| |||||| |||||||||| || || || || |||||||| ||||| | || ||||| || |||| |||||||| |||||| | |
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| T |
55444641 |
ggatggggtgtaagggctggcgaggctatttcgcgcggaacatttgtgtgtgagtacattggagaggttttagaagagcaagaggcacacaacagatgca |
55444542 |
T |
|
| Q |
182 |
gaaggtttacatttcttccaagatgtagtttcttctcttggttgcttgatgtttcttcctttttactgacttggcctattttaataccagatatagcaaa |
281 |
Q |
| |
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|||||||| ||||||| |||||| |||||| || || |||| ||||||||||| ||||||||||| ||| |||| | |||||||| ||| | || |
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| T |
55444541 |
aaaggtttaaatttctttcaagatatagtttatt---ttagttggttgatgtttctggatttttactgacatggtctatgtcaataccagttatggagaa |
55444445 |
T |
|
| Q |
282 |
gaaaattgcagtaatttgtttgatatcaatgctcgtgttaaccatatgaatagattggtcgagggacatgcccgatatgtcattgcttctactacatatg |
381 |
Q |
| |
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||| |||||||| |||| | || | | ||||||||||||| | |||| | ||||| |||| |||| |||| |||| |||||| |||||||| ||||| |
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| T |
55444444 |
gaacattgcagttatttctatgttgttgatgctcgtgttaatgacatgagtcgattgatcgaaagacaggcccaatatatcattgattctactagatatg |
55444345 |
T |
|
| Q |
382 |
gaaatgtgtct |
392 |
Q |
| |
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||||||||||| |
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|
| T |
55444344 |
gaaatgtgtct |
55444334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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