View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_low_102 (Length: 409)

Name: NF0154_2D_low_102
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_low_102
NF0154_2D_low_102
[»] chr8 (22 HSPs)
chr8 (21-329)||(42791813-42792122)
chr8 (328-400)||(9241562-9241634)
chr8 (330-400)||(10678170-10678240)
chr8 (360-400)||(11582808-11582848)
chr8 (360-400)||(26125677-26125717)
chr8 (360-400)||(36743501-36743541)
chr8 (360-398)||(30660762-30660800)
chr8 (360-400)||(29800968-29801008)
chr8 (360-400)||(45397358-45397398)
chr8 (361-400)||(42197453-42197492)
chr8 (360-400)||(29705404-29705444)
chr8 (360-400)||(31384706-31384746)
chr8 (368-400)||(42295245-42295277)
chr8 (330-369)||(19386631-19386670)
chr8 (330-369)||(35181516-35181555)
chr8 (363-401)||(2165980-2166018)
chr8 (371-400)||(5754956-5754985)
chr8 (371-400)||(20148813-20148842)
chr8 (368-400)||(2547046-2547078)
chr8 (329-365)||(28977145-28977181)
chr8 (368-400)||(30912580-30912612)
chr8 (360-400)||(42699299-42699339)
[»] chr2 (21 HSPs)
chr2 (329-400)||(42849876-42849947)
chr2 (360-400)||(19047199-19047239)
chr2 (360-401)||(43490418-43490459)
chr2 (360-400)||(1750456-1750496)
chr2 (360-400)||(12302271-12302311)
chr2 (360-400)||(30838674-30838714)
chr2 (360-397)||(33229344-33229381)
chr2 (368-400)||(43335781-43335813)
chr2 (330-369)||(966895-966934)
chr2 (330-369)||(16803968-16804007)
chr2 (330-369)||(16843250-16843289)
chr2 (330-369)||(18491705-18491744)
chr2 (330-369)||(43114557-43114596)
chr2 (332-369)||(11825715-11825752)
chr2 (329-366)||(16096746-16096783)
chr2 (359-400)||(16096788-16096829)
chr2 (360-397)||(39149313-39149350)
chr2 (332-369)||(41282035-41282072)
chr2 (360-400)||(4451968-4452008)
chr2 (329-365)||(12415525-12415561)
chr2 (329-365)||(12427585-12427621)
[»] chr3 (21 HSPs)
chr3 (329-400)||(52629839-52629910)
chr3 (360-400)||(24688420-24688460)
chr3 (360-400)||(42394437-42394477)
chr3 (360-400)||(54237138-54237178)
chr3 (329-400)||(36150129-36150212)
chr3 (359-400)||(27748604-27748645)
chr3 (360-400)||(40480791-40480831)
chr3 (360-400)||(40808907-40808947)
chr3 (360-400)||(42100730-42100770)
chr3 (360-400)||(45126946-45126986)
chr3 (360-400)||(46941095-46941135)
chr3 (360-400)||(25413723-25413763)
chr3 (368-400)||(53273702-53273734)
chr3 (360-400)||(53581876-53581916)
chr3 (360-400)||(54246166-54246206)
chr3 (330-369)||(4190326-4190365)
chr3 (330-400)||(19148793-19148861)
chr3 (360-400)||(4190283-4190323)
chr3 (330-366)||(25413681-25413717)
chr3 (329-365)||(34791828-34791864)
chr3 (330-366)||(54246212-54246248)
[»] chr1 (16 HSPs)
chr1 (329-400)||(4888054-4888125)
chr1 (360-400)||(5489818-5489858)
chr1 (360-400)||(43571104-43571144)
chr1 (328-369)||(35003292-35003333)
chr1 (360-400)||(4401370-4401410)
chr1 (329-369)||(48119627-48119667)
chr1 (368-400)||(48498980-48499012)
chr1 (330-369)||(14427347-14427386)
chr1 (330-369)||(44112677-44112716)
chr1 (330-369)||(45427806-45427845)
chr1 (360-394)||(24769523-24769557)
chr1 (360-398)||(50448280-50448318)
chr1 (363-400)||(23989541-23989578)
chr1 (330-367)||(41065153-41065190)
chr1 (360-400)||(2497580-2497620)
chr1 (329-365)||(38335917-38335953)
[»] chr4 (26 HSPs)
chr4 (329-400)||(36004134-36004205)
chr4 (360-400)||(25051735-25051775)
chr4 (328-398)||(51512285-51512355)
chr4 (360-400)||(27864606-27864646)
chr4 (360-400)||(33703183-33703223)
chr4 (360-400)||(43949819-43949859)
chr4 (359-401)||(27316730-27316772)
chr4 (360-400)||(23036022-23036062)
chr4 (360-400)||(27893860-27893900)
chr4 (368-400)||(39631151-39631183)
chr4 (368-400)||(48463468-48463500)
chr4 (368-400)||(55966364-55966396)
chr4 (330-369)||(711960-711999)
chr4 (330-365)||(28988473-28988508)
chr4 (368-398)||(27550359-27550389)
chr4 (332-369)||(3756307-3756344)
chr4 (371-400)||(28982840-28982869)
chr4 (371-400)||(31680955-31680984)
chr4 (360-400)||(712002-712042)
chr4 (360-400)||(1771284-1771324)
chr4 (330-366)||(1771330-1771366)
chr4 (329-369)||(17619213-17619253)
chr4 (360-396)||(23204800-23204836)
chr4 (360-400)||(35017775-35017814)
chr4 (360-400)||(41878448-41878488)
chr4 (368-400)||(43514704-43514736)
[»] chr6 (15 HSPs)
chr6 (359-400)||(7292788-7292829)
chr6 (360-400)||(9698351-9698391)
chr6 (360-400)||(13743239-13743279)
chr6 (360-400)||(13748739-13748779)
chr6 (360-400)||(7273353-7273393)
chr6 (368-400)||(7367599-7367631)
chr6 (368-400)||(24204005-24204037)
chr6 (368-400)||(26670027-26670059)
chr6 (327-369)||(27441539-27441581)
chr6 (359-400)||(30014384-30014425)
chr6 (368-400)||(21279979-21280011)
chr6 (368-400)||(26466849-26466881)
chr6 (360-400)||(27441584-27441624)
chr6 (327-363)||(30014340-30014376)
chr6 (368-400)||(30736032-30736064)
[»] chr5 (10 HSPs)
chr5 (359-400)||(41334681-41334722)
chr5 (360-400)||(2614667-2614707)
chr5 (359-400)||(7617174-7617215)
chr5 (360-400)||(18034024-18034064)
chr5 (360-400)||(5257037-5257077)
chr5 (368-400)||(22512355-22512387)
chr5 (330-365)||(41334728-41334763)
chr5 (328-365)||(32473459-32473496)
chr5 (368-400)||(33801519-33801551)
chr5 (330-366)||(33855107-33855143)
[»] scaffold0038 (1 HSPs)
scaffold0038 (360-400)||(112697-112737)
[»] chr7 (20 HSPs)
chr7 (360-400)||(24001030-24001070)
chr7 (360-400)||(42538449-42538489)
chr7 (368-400)||(5015445-5015477)
chr7 (360-400)||(5810942-5810982)
chr7 (360-400)||(27393278-27393318)
chr7 (368-400)||(35069771-35069803)
chr7 (330-366)||(41861674-41861710)
chr7 (368-400)||(42972902-42972934)
chr7 (360-400)||(43343642-43343682)
chr7 (360-400)||(44416952-44416992)
chr7 (360-400)||(45326062-45326102)
chr7 (330-369)||(24280657-24280696)
chr7 (368-398)||(26898422-26898452)
chr7 (360-398)||(32029837-32029875)
chr7 (328-369)||(31513285-31513326)
chr7 (371-400)||(44326231-44326260)
chr7 (360-400)||(4638217-4638257)
chr7 (360-400)||(10573791-10573831)
chr7 (360-400)||(38160597-38160637)
chr7 (325-365)||(43317438-43317478)
[»] scaffold0385 (1 HSPs)
scaffold0385 (360-400)||(11293-11333)
[»] scaffold0187 (2 HSPs)
scaffold0187 (360-400)||(14206-14246)
scaffold0187 (360-400)||(24534-24574)
[»] scaffold0119 (1 HSPs)
scaffold0119 (368-400)||(735-767)
[»] scaffold0003 (2 HSPs)
scaffold0003 (327-369)||(45780-45822)
scaffold0003 (360-400)||(45737-45777)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 329
Target Start/End: Original strand, 42791813 - 42792122
Alignment:
Q  21 caatcaatgtaaattaaccttcaatttttaaagaaatagtcatgatagtccgaagttcagtcaaaagataaataaaatctaataaaaagttgtctaccag 120  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||     
T  42791813 caatcaatgtaaattaaccttcaatttttaaaaaaatagttatgatagtccgaagttcggtcaaaagataaataaaatctaataaaaagttatctaccac 42791912  T
Q  121 taaacttatgaatgatgcaagtcttgtcttacatctatttataaaattagtcatcaagttgtataaagtattagcgt-nnnnnnnntgttgtattatgtg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||    
T  42791913 taaacttatgaatgatgcaagtcttgtcttacatctatttataaaattagtcatcaagttgtataaagtattagcgtaaaaaaaaaagttgtattatgtg 42792012  T
Q  220 nnnnnnnagnnnnnnnttgtctatcgcacggagcacaagcacaacatttcagtttatatttacttttatccaaacaaaaccaggcaataatatatgcagc 319  Q
           ||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  42792013 tttttttagaaaaaaattgtctaccgcacggagcacaagcacaacatttcagtttatatttacttttatccaaacaagaccaggcaataatatatacagc 42792112  T
Q  320 aaattaaatt 329  Q
    ||||||||||    
T  42792113 aaattaaatt 42792122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 9241562 - 9241634
Alignment:
Q  328 ttggaaaatgttacatgaataccctttattcatacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||   ||||||||| |||||||||| ||||||||||||||| ||||||||||||||    
T  9241562 ttggaaaatgttacatgaacctcctttattcctacaccctatatattagggatatttttgtaagttcatctca 9241634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 400
Target Start/End: Complemental strand, 10678240 - 10678170
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||| |||||||||| || ||||| ||| |||||||||| |||||||||    
T  10678240 ggaaaatgttacatgaataccctttaatcatacaccccatatattaaggacattttggtaaattcatctca 10678170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 11582808 - 11582848
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11582808 tacaccctatgtattagggatattttggtaagttcatctca 11582848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 26125677 - 26125717
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26125677 tacaccctatgtattagggatattttggtaagttcatctca 26125717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 36743541 - 36743501
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36743541 tacaccctatgtattagggatattttggtaagttcatctca 36743501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 398
Target Start/End: Complemental strand, 30660800 - 30660762
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatct 398  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30660800 tacaccctatgtattagggatattttggtaagttcatct 30660762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 29801008 - 29800968
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  29801008 tacaccccatgtattagggatattttggtaagttcatctca 29800968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 45397358 - 45397398
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  45397358 tacaccctatgtattagggatatttttgtaagttcatctca 45397398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 400
Target Start/End: Complemental strand, 42197492 - 42197453
Alignment:
Q  361 acaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  42197492 acacactatgtattagggatattttggtaagttcatctca 42197453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 29705404 - 29705444
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  29705404 tacaccccatgtattagggatattttgataagttcatctca 29705444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 31384706 - 31384746
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  31384706 tacaccccatgtattaggaatattttggtaagttcatctca 31384746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 42295245 - 42295277
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||    
T  42295245 atgtattagggatattttggtaagttcatctca 42295277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 369
Target Start/End: Complemental strand, 19386670 - 19386631
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccctat 369  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  19386670 ggaaaatgttacatgaacaccctttaatcatacaccctat 19386631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 369
Target Start/End: Original strand, 35181516 - 35181555
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccctat 369  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  35181516 ggaaaatgttacatgaacaccctttaatcatacaccctat 35181555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 2166018 - 2165980
Alignment:
Q  363 accctatgtattagggatattttggtaagttcatctcat 401  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  2166018 accccatgtattagagatattttggtaagttcatctcat 2165980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 400
Target Start/End: Original strand, 5754956 - 5754985
Alignment:
Q  371 tattagggatattttggtaagttcatctca 400  Q
    ||||||||||||||||||||||||||||||    
T  5754956 tattagggatattttggtaagttcatctca 5754985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 400
Target Start/End: Original strand, 20148813 - 20148842
Alignment:
Q  371 tattagggatattttggtaagttcatctca 400  Q
    ||||||||||||||||||||||||||||||    
T  20148813 tattagggatattttggtaagttcatctca 20148842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 2547046 - 2547078
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||| ||||||||||||||    
T  2547046 atgtattagggatattttagtaagttcatctca 2547078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 28977145 - 28977181
Alignment:
Q  329 tggaaaatgttacatgaataccctttattcatacacc 365  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  28977145 tggaaaatgttacatgaacaccctttattcctacacc 28977181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 30912612 - 30912580
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    ||||||||||| |||||||||||||||||||||    
T  30912612 atgtattaggggtattttggtaagttcatctca 30912580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 42699299 - 42699339
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||| ||||||||| ||||||||| ||||||||||||||    
T  42699299 tacaccttatgtattatggatatttttgtaagttcatctca 42699339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 42849947 - 42849876
Alignment:
Q  329 tggaaaatgttacatgaataccctttattcatacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| |||||||||||||    
T  42849947 tggaaaatgttacatgaacaccctttattcctacaccccatgtattagggatattttgataagttcatctca 42849876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 19047199 - 19047239
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19047199 tacaccctatgtattagggatattttggtaagttcatctca 19047239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 360 - 401
Target Start/End: Complemental strand, 43490459 - 43490418
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctcat 401  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  43490459 tacactctatgtattagggatattttggtaagttcatctcat 43490418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 1750456 - 1750496
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  1750456 tacaccctatgtattagggatatttttgtaagttcatctca 1750496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 12302311 - 12302271
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  12302311 tacaccctatgtattagggatatttttgtaagttcatctca 12302271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 30838674 - 30838714
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  30838674 tacaccccatgtattagggatattttggtaagttcatctca 30838714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 397
Target Start/End: Original strand, 33229344 - 33229381
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatc 397  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  33229344 tacaccccatgtattagggatattttggtaagttcatc 33229381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 43335813 - 43335781
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||    
T  43335813 atgtattagggatattttggtaagttcatctca 43335781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 369
Target Start/End: Complemental strand, 966934 - 966895
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccctat 369  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  966934 ggaaaatgttacatgaacaccctttaatcatacaccctat 966895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 369
Target Start/End: Original strand, 16803968 - 16804007
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccctat 369  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  16803968 ggaaaatgttacatgaacaccctttaatcatacaccctat 16804007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 369
Target Start/End: Original strand, 16843250 - 16843289
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccctat 369  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  16843250 ggaaaatgttacatgaacaccctttaatcatacaccctat 16843289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 369
Target Start/End: Original strand, 18491705 - 18491744
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccctat 369  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  18491705 ggaaaatgttacatgaacaccctttaatcatacaccctat 18491744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 369
Target Start/End: Original strand, 43114557 - 43114596
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccctat 369  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  43114557 ggaaaatgttacatgaacaccctttaatcatacaccctat 43114596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 369
Target Start/End: Complemental strand, 11825752 - 11825715
Alignment:
Q  332 aaaatgttacatgaataccctttattcatacaccctat 369  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctat 11825715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 366
Target Start/End: Original strand, 16096746 - 16096783
Alignment:
Q  329 tggaaaatgttacatgaataccctttattcatacaccc 366  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  16096746 tggaaaatgttacatgaacaccctttattcctacaccc 16096783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 400
Target Start/End: Original strand, 16096788 - 16096829
Alignment:
Q  359 atacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||| ||||||||||||||||||||| |||| ||||||    
T  16096788 atacaccccatgtattagggatattttggtgagttaatctca 16096829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 397
Target Start/End: Complemental strand, 39149350 - 39149313
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatc 397  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  39149350 tacatcctatgtattagagatattttggtaagttcatc 39149313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 369
Target Start/End: Complemental strand, 41282072 - 41282035
Alignment:
Q  332 aaaatgttacatgaataccctttattcatacaccctat 369  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctat 41282035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 4452008 - 4451968
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||| |||| ||||||||||||||||||| |||||||||    
T  4452008 tacaccatatgcattagggatattttggtaaattcatctca 4451968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 12415561 - 12415525
Alignment:
Q  329 tggaaaatgttacatgaataccctttattcatacacc 365  Q
    |||||||||||||||||| |||||||| |||||||||    
T  12415561 tggaaaatgttacatgaacaccctttaatcatacacc 12415525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 12427621 - 12427585
Alignment:
Q  329 tggaaaatgttacatgaataccctttattcatacacc 365  Q
    |||||||||||||||||| |||||||| |||||||||    
T  12427621 tggaaaatgttacatgaacaccctttaatcatacacc 12427585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 400
Target Start/End: Original strand, 52629839 - 52629910
Alignment:
Q  329 tggaaaatgttacatgaataccctttattcatacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||| ||||||||| ||| ||||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  52629839 tggaaaatattacatgaacaccttttattcctacaccctatgtattaaggatatttttgtaagttcatctca 52629910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 24688460 - 24688420
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24688460 tacaccctatgtattagggatattttggtaagttcatctca 24688420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 42394477 - 42394437
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42394477 tacaccctatgtattagggatattttggtaagttcatctca 42394437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 54237138 - 54237178
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  54237138 tacaccctatgtattagggatattttggtaagttcatctca 54237178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 329 - 400
Target Start/End: Original strand, 36150129 - 36150212
Alignment:
Q  329 tggaaaatgttacatgaataccctttattc------------atacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||||||||||||||||||||||||||            ||||||||||||||| ||||||||||||||||||||||||||    
T  36150129 tggaaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttcatctca 36150212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 359 - 400
Target Start/End: Original strand, 27748604 - 27748645
Alignment:
Q  359 atacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  27748604 atacaccttatgtattagggatattttggtaagttcatctca 27748645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 40480791 - 40480831
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  40480791 tacatcctatgtattagggatattttggtaagttcatctca 40480831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 40808907 - 40808947
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  40808907 tacaccccatgtattagggatattttggtaagttcatctca 40808947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 42100730 - 42100770
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  42100730 tacaccccatgtattagggatattttggtaagttcatctca 42100770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 45126986 - 45126946
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  45126986 tacaccccatgtattagggatattttggtaagttcatctca 45126946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 46941095 - 46941135
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  46941095 tacaccccatgtattagggatattttggtaagttcatctca 46941135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 25413723 - 25413763
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  25413723 tacaccttatgtattagggatatttttgtaagttcatctca 25413763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 53273734 - 53273702
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||    
T  53273734 atgtattagggatattttggtaagttcatctca 53273702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 53581916 - 53581876
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  53581916 tacatcctatgtattagggatattttgataagttcatctca 53581876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 54246206 - 54246166
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  54246206 tacaccctatgtattagagatatttttgtaagttcatctca 54246166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 369
Target Start/End: Complemental strand, 4190365 - 4190326
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccctat 369  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  4190365 ggaaaatgttacatgaacaccctttaatcatacaccctat 4190326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 400
Target Start/End: Original strand, 19148793 - 19148861
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||||||| |||||  | ||||||||| ||||||||||||||||||| ||||| |||| || ||||||    
T  19148793 ggaaaatgttatatgaa--ctctttattcacacaccctatgtattagggacattttagtaaatttatctca 19148861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 4190323 - 4190283
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||| |||||||||| ||||||||||||| |||||||||    
T  4190323 tacaccttatgtattagagatattttggtaaattcatctca 4190283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 25413681 - 25413717
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccc 366  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  25413681 ggaaaatgttacatgaacaccctttattcctacaccc 25413717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 34791828 - 34791864
Alignment:
Q  329 tggaaaatgttacatgaataccctttattcatacacc 365  Q
    |||||||||||||||||| |||||||| |||||||||    
T  34791828 tggaaaatgttacatgaacaccctttaatcatacacc 34791864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 54246248 - 54246212
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccc 366  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  54246248 ggaaaatgttacatgaacaccctttattcctacaccc 54246212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 400
Target Start/End: Original strand, 4888054 - 4888125
Alignment:
Q  329 tggaaaatgttacatgaataccctttattcatacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||||||||||||||  |||||||||| |||| || |||||||||||||||||||||||||| ||||||    
T  4888054 tggaaaatgttacatgaacgccctttattcctacatcccatgtattagggatattttggtaagtttatctca 4888125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 5489818 - 5489858
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5489818 tacaccctatgtattagggatattttggtaagttcatctca 5489858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 43571144 - 43571104
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  43571144 tacaccccatgtattagggatattttggtaagttcatctca 43571104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 35003292 - 35003333
Alignment:
Q  328 ttggaaaatgttacatgaataccctttattcatacaccctat 369  Q
    ||||||||||||||||||| |||||||| |||||||||||||    
T  35003292 ttggaaaatgttacatgaacaccctttaatcatacaccctat 35003333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 4401370 - 4401410
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| ||||||||| |||||||||||||||||||||||    
T  4401370 tacaccccatgtattagagatattttggtaagttcatctca 4401410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 48119627 - 48119667
Alignment:
Q  329 tggaaaatgttacatgaataccctttattcatacaccctat 369  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  48119627 tggaaaatgttacatgaacaccctttaatcatacaccctat 48119667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 48499012 - 48498980
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||    
T  48499012 atgtattagggatattttggtaagttcatctca 48498980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 369
Target Start/End: Original strand, 14427347 - 14427386
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccctat 369  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  14427347 ggaaaatgttacatgaacaccctttaatcatacaccctat 14427386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 369
Target Start/End: Original strand, 44112677 - 44112716
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccctat 369  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  44112677 ggaaaatgttacatgaacaccctttaatcatacaccctat 44112716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 369
Target Start/End: Complemental strand, 45427845 - 45427806
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccctat 369  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  45427845 ggaaaatgttacatgaataccttttaatcatacaccctat 45427806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 394
Target Start/End: Complemental strand, 24769557 - 24769523
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttc 394  Q
    ||||||| |||||||||||||||||||||||||||    
T  24769557 tacaccccatgtattagggatattttggtaagttc 24769523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 398
Target Start/End: Complemental strand, 50448318 - 50448280
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatct 398  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  50448318 tacaccttatgtattagggatatttttgtaagttcatct 50448280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 400
Target Start/End: Complemental strand, 23989578 - 23989541
Alignment:
Q  363 accctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||| || ||||||    
T  23989578 accctatgtattagggatattttggtaaatttatctca 23989541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 41065153 - 41065190
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccct 367  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  41065153 ggaaaatgttacatgaacaccctttaatcatacaccct 41065190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 2497620 - 2497580
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| || ||||| ||||||||||||||||||||||||    
T  2497620 tacaccccatatattaaggatattttggtaagttcatctca 2497580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 38335917 - 38335953
Alignment:
Q  329 tggaaaatgttacatgaataccctttattcatacacc 365  Q
    |||||||||||||||||| |||||||| |||||||||    
T  38335917 tggaaaatgttacatgaacaccctttaatcatacacc 38335953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 36004205 - 36004134
Alignment:
Q  329 tggaaaatgttacatgaataccctttattcatacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||||||||||||||||||||||| |||||||||| || ||||||||| |||||| ||| || ||||||    
T  36004205 tggaaaatgttacatgaataccctttaatcatacaccccatatattagggacattttgataaatttatctca 36004134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 25051735 - 25051775
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25051735 tacaccctatgtattagggatattttggtaagttcatctca 25051775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 398
Target Start/End: Complemental strand, 51512355 - 51512285
Alignment:
Q  328 ttggaaaatgttacatgaataccctttattcatacaccctatgtattagggatattttggtaagttcatct 398  Q
    |||||||||||   | ||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||||    
T  51512355 ttggaaaatgtatgaagaacaccctttattcctacaccccatgtattagagatattttggtaagttcatct 51512285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 27864606 - 27864646
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  27864606 tacaccccatgtattagggatattttggtaagttcatctca 27864646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 33703183 - 33703223
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  33703183 tacaccccatgtattagggatattttggtaagttcatctca 33703223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 43949859 - 43949819
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  43949859 tacaccccatgtattagggatattttggtaagttcatctca 43949819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 359 - 401
Target Start/End: Complemental strand, 27316772 - 27316730
Alignment:
Q  359 atacaccctatgtattagggatattttggtaagttcatctcat 401  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  27316772 atacaccccatgtattaaggatattttggtaagttcatctcat 27316730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 23036022 - 23036062
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||| ||||||||||||||| ||||||||||||||    
T  23036022 tacaccctatatattagggatatttttgtaagttcatctca 23036062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 27893900 - 27893860
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  27893900 tacaccccatgtattagggatattttggtaatttcatctca 27893860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 39631151 - 39631183
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||    
T  39631151 atgtattagggatattttggtaagttcatctca 39631183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 48463500 - 48463468
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||    
T  48463500 atgtattagggatattttggtaagttcatctca 48463468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 55966396 - 55966364
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||    
T  55966396 atgtattagggatattttggtaagttcatctca 55966364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 369
Target Start/End: Original strand, 711960 - 711999
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccctat 369  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  711960 ggaaaatgttacatgaacaccctttaatcatacaccctat 711999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 365
Target Start/End: Original strand, 28988473 - 28988508
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacacc 365  Q
    ||||||||||||||||| ||||||||||||||||||    
T  28988473 ggaaaatgttacatgaacaccctttattcatacacc 28988508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 398
Target Start/End: Original strand, 27550359 - 27550389
Alignment:
Q  368 atgtattagggatattttggtaagttcatct 398  Q
    |||||||||||||||||||||||||||||||    
T  27550359 atgtattagggatattttggtaagttcatct 27550389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 369
Target Start/End: Complemental strand, 3756344 - 3756307
Alignment:
Q  332 aaaatgttacatgaataccctttattcatacaccctat 369  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  3756344 aaaatgttacatgaacaccctttaatcatacaccctat 3756307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 400
Target Start/End: Complemental strand, 28982869 - 28982840
Alignment:
Q  371 tattagggatattttggtaagttcatctca 400  Q
    ||||||||||||||||||||||||||||||    
T  28982869 tattagggatattttggtaagttcatctca 28982840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 400
Target Start/End: Original strand, 31680955 - 31680984
Alignment:
Q  371 tattagggatattttggtaagttcatctca 400  Q
    ||||||||||||||||||||||||||||||    
T  31680955 tattagggatattttggtaagttcatctca 31680984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 712002 - 712042
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||||||| |||| |||||||||||||| |||||||||    
T  712002 tacaccctatgcattaaggatattttggtaaattcatctca 712042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 1771324 - 1771284
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| ||||||||| ||||||||| |||||||||||||    
T  1771324 tacaccccatgtattagagatattttgataagttcatctca 1771284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 1771366 - 1771330
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccc 366  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  1771366 ggaaaatgttacatgaacaccctttattcctacaccc 1771330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 17619253 - 17619213
Alignment:
Q  329 tggaaaatgttacatgaataccctttattcatacaccctat 369  Q
    |||||||||||||||||| ||| |||| |||||||||||||    
T  17619253 tggaaaatgttacatgaacaccttttaatcatacaccctat 17619213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 396
Target Start/End: Complemental strand, 23204836 - 23204800
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcat 396  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  23204836 tacatcctatgtattagggatatttttgtaagttcat 23204800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 35017775 - 35017814
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  35017775 tacaccccatgtat-agggatattttggtaagttcatctca 35017814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 41878448 - 41878488
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||||||  ||||||||||||||| |||||||||||||    
T  41878448 tacaccctatccattagggatattttgataagttcatctca 41878488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 43514736 - 43514704
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    ||||||||||| |||||||||||||||||||||    
T  43514736 atgtattagggttattttggtaagttcatctca 43514704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 400
Target Start/End: Original strand, 7292788 - 7292829
Alignment:
Q  359 atacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7292788 atacaccctatgtattagggatattttggtaagttcatctca 7292829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 9698391 - 9698351
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9698391 tacaccctatgtattagggatattttggtaagttcatctca 9698351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 13743279 - 13743239
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  13743279 tacaccccatgtattagggatattttggtaagttcatctca 13743239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 13748779 - 13748739
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  13748779 tacaccccatgtattagggatattttggtaagttcatctca 13748739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 7273393 - 7273353
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| ||||||||| |||||||||||||||||||||||    
T  7273393 tacaccccatgtattagagatattttggtaagttcatctca 7273353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 7367599 - 7367631
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||    
T  7367599 atgtattagggatattttggtaagttcatctca 7367631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 24204037 - 24204005
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||    
T  24204037 atgtattagggatattttggtaagttcatctca 24204005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 26670059 - 26670027
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||    
T  26670059 atgtattagggatattttggtaagttcatctca 26670027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 27441539 - 27441581
Alignment:
Q  327 attggaaaatgttacatgaataccctttattcatacaccctat 369  Q
    |||| ||||||||||||||| |||||||| |||||||||||||    
T  27441539 attgaaaaatgttacatgaacaccctttaatcatacaccctat 27441581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 400
Target Start/End: Original strand, 30014384 - 30014425
Alignment:
Q  359 atacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||| || |||||||||| ||||||||||||||||||||||    
T  30014384 atacatcccatgtattaggcatattttggtaagttcatctca 30014425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 21279979 - 21280011
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    ||||||||||||||||||||||| |||||||||    
T  21279979 atgtattagggatattttggtaaattcatctca 21280011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 26466849 - 26466881
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    ||||||||||| |||||||||||||||||||||    
T  26466849 atgtattagggttattttggtaagttcatctca 26466881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 27441584 - 27441624
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||| ||||||||||| |||||||||||||| |||||||||    
T  27441584 tacatcctatgtattaaggatattttggtaaattcatctca 27441624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 30014340 - 30014376
Alignment:
Q  327 attggaaaatgttacatgaataccctttattcataca 363  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  30014340 attggaaaatgttacatgaacaccctttattcctaca 30014376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 30736032 - 30736064
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    ||||||||| |||||||||||||||||||||||    
T  30736032 atgtattagtgatattttggtaagttcatctca 30736064  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 400
Target Start/End: Complemental strand, 41334722 - 41334681
Alignment:
Q  359 atacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41334722 atacaccctatgtattagggatattttggtaagttcatctca 41334681  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 2614707 - 2614667
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2614707 tacaccctatgtattagggatattttggtaagttcatctca 2614667  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 359 - 400
Target Start/End: Original strand, 7617174 - 7617215
Alignment:
Q  359 atacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  7617174 atacaccccatgtattagggatattttggtaagttcatctca 7617215  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 18034024 - 18034064
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  18034024 tacaccctatgtattagggatatttttgtaagttcatctca 18034064  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 5257037 - 5257077
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  5257037 tacaccccatgtattagggatattttggtaatttcatctca 5257077  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 22512355 - 22512387
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||    
T  22512355 atgtattagggatattttggtaagttcatctca 22512387  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 365
Target Start/End: Complemental strand, 41334763 - 41334728
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacacc 365  Q
    ||||||||||||||||| ||||||||||||||||||    
T  41334763 ggaaaatgttacatgaacaccctttattcatacacc 41334728  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 32473496 - 32473459
Alignment:
Q  328 ttggaaaatgttacatgaataccctttattcatacacc 365  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  32473496 ttggaaaatgttacatgaacaccctttaatcatacacc 32473459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 33801519 - 33801551
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||| ||||||||||||||    
T  33801519 atgtattagggatattttagtaagttcatctca 33801551  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 33855143 - 33855107
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccc 366  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  33855143 ggaaaatgttacatgaacaccctttattcctacaccc 33855107  T

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Target: scaffold0038 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 112697 - 112737
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  112697 tacaccctatgtattagggatattttggtaagttcatctca 112737  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 24001070 - 24001030
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24001070 tacaccctatgtattagggatattttggtaagttcatctca 24001030  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 42538489 - 42538449
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42538489 tacaccctatgtattagggatattttggtaagttcatctca 42538449  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 5015445 - 5015477
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||    
T  5015445 atgtattagggatattttggtaagttcatctca 5015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 5810982 - 5810942
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||||||||| |||||||||||||||| |||||||||||||    
T  5810982 tacaccctatatattagggatattttgataagttcatctca 5810942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 27393318 - 27393278
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  27393318 tacactctatgtattagggatatttttgtaagttcatctca 27393278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 35069771 - 35069803
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||    
T  35069771 atgtattagggatattttggtaagttcatctca 35069803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 41861674 - 41861710
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccc 366  Q
    ||||||||||||||||| |||||||||||||||||||    
T  41861674 ggaaaatgttacatgaacaccctttattcatacaccc 41861710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 42972902 - 42972934
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||    
T  42972902 atgtattagggatattttggtaagttcatctca 42972934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 43343682 - 43343642
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  43343682 tacaccccatgtattagggatattttgataagttcatctca 43343642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 44416992 - 44416952
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  44416992 tacaccccatgtattagggatattttgataagttcatctca 44416952  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 45326062 - 45326102
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  45326062 tacaccccatatattagggatattttggtaagttcatctca 45326102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 369
Target Start/End: Complemental strand, 24280696 - 24280657
Alignment:
Q  330 ggaaaatgttacatgaataccctttattcatacaccctat 369  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  24280696 ggaaaatgttacgtgaacaccctttattcatacaccctat 24280657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 398
Target Start/End: Complemental strand, 26898452 - 26898422
Alignment:
Q  368 atgtattagggatattttggtaagttcatct 398  Q
    |||||||||||||||||||||||||||||||    
T  26898452 atgtattagggatattttggtaagttcatct 26898422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 398
Target Start/End: Complemental strand, 32029875 - 32029837
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatct 398  Q
    ||||||| ||||||||||||||||||||||| |||||||    
T  32029875 tacaccccatgtattagggatattttggtaaattcatct 32029837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 31513285 - 31513326
Alignment:
Q  328 ttggaaaatgttacatgaataccctttattcatacaccctat 369  Q
    ||||||||||||||||||| || ||||| |||||||||||||    
T  31513285 ttggaaaatgttacatgaacactctttaatcatacaccctat 31513326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 400
Target Start/End: Original strand, 44326231 - 44326260
Alignment:
Q  371 tattagggatattttggtaagttcatctca 400  Q
    ||||||||||||||||||||||||||||||    
T  44326231 tattagggatattttggtaagttcatctca 44326260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 4638257 - 4638217
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| || ||||| ||||||||||||||||||||||||    
T  4638257 tacaccccatatattatggatattttggtaagttcatctca 4638217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 10573791 - 10573831
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| |||||||||| |||||||||||| |||||||||    
T  10573791 tacaccccatgtattaggaatattttggtaaattcatctca 10573831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 38160637 - 38160597
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| |||||||||||||||||| |||| |||||||||    
T  38160637 tacaccccatgtattagggatattttagtaacttcatctca 38160597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 365
Target Start/End: Original strand, 43317438 - 43317478
Alignment:
Q  325 aaattggaaaatgttacatgaataccctttattcatacacc 365  Q
    |||| ||||||||||||||||| ||| ||||||||||||||    
T  43317438 aaataggaaaatgttacatgaacaccatttattcatacacc 43317478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 11293 - 11333
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  11293 tacaccccatatattagggatattttggtaagttcatctca 11333  T

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Target: scaffold0187 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 14246 - 14206
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  14246 tacatcctatgtattagggatatttttgtaagttcatctca 14206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 24574 - 24534
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  24574 tacatcctatgtattagggatatttttgtaagttcatctca 24534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 735 - 767
Alignment:
Q  368 atgtattagggatattttggtaagttcatctca 400  Q
    |||||||||||||||||||||||||||||||||    
T  735 atgtattagggatattttggtaagttcatctca 767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 45822 - 45780
Alignment:
Q  327 attggaaaatgttacatgaataccctttattcatacaccctat 369  Q
    |||| ||||||||||||||| |||||||| |||||||||||||    
T  45822 attgaaaaatgttacatgaacaccctttaatcatacaccctat 45780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 45777 - 45737
Alignment:
Q  360 tacaccctatgtattagggatattttggtaagttcatctca 400  Q
    |||| ||||||||||| |||||||||||||| |||||||||    
T  45777 tacatcctatgtattaaggatattttggtaaattcatctca 45737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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