View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_105 (Length: 408)
Name: NF0154_2D_low_105
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_105 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 52 - 343
Target Start/End: Complemental strand, 48755525 - 48755237
Alignment:
| Q |
52 |
taaaagacaagtaaaattatccagtagacttgagctgatattgtctgatactgagcaatcaaggcctaatgtgattnnnnnnngtaaaagatccaagaat |
151 |
Q |
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| T |
48755525 |
taaaagacaagtaaaattatcca-tagacttgagctgatattgtctgatactgagcaatcaaggcctaatgtgattaaaaaaagtaaaagatccaagaat |
48755427 |
T |
|
| Q |
152 |
gttggtgttgatattttccaactcttcccaaagatcaagattgtaacataaatacaaaaggaatccaaggaacactaaaaaactaacaagaaatacaatt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48755426 |
gttggtgttgatattttccaactcttcccaaagatcaagattgtaacataaatacaaaaggaatccaaggaacactaaaaaactaacaagaaatacaatt |
48755327 |
T |
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| Q |
252 |
gcaacaagttatatcaaatgtaatatacttnnnnnnnngtgtatcacatattcacatttgacaagatataattcatgtgcaagacttttgtc |
343 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48755326 |
gcaacaagttatatcaaatgta--atacttaaaaaaaagtgtatcacatattcacatttgacaagatataattcatttgcaagacttttgtc |
48755237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 48755553 - 48755525
Alignment:
| Q |
1 |
caaccggaaaaaatatatggttattacat |
29 |
Q |
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| T |
48755553 |
caaccggaaaaaatatatggttattacat |
48755525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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