View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_108 (Length: 401)
Name: NF0154_2D_low_108
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_108 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: scaffold0391 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 12343 - 12743
Alignment:
| Q |
1 |
cttggaatttaccaatgcaccaaagaaccaattgagaagagaaaaaggctgattattgacatgaatgaaaacaaacatgaacggtgtttaggggagaagc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12343 |
cttggaatttaccaatgcactaaagaaccaattgagaagagaaaaaggctgattattgacatgaatgaaaacaaacatgaacggtgtttaggggagaagc |
12442 |
T |
|
| Q |
101 |
atcaaagcctgatgactcgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcgctgcccgtatattgtcagtatcaactgg |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12443 |
atcaaagcctgatgacttgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcgctgcccgtatattgtcagtatcaactgg |
12542 |
T |
|
| Q |
201 |
ttagtaatatttgtaccttcatcaaaattatattcaccaacataaaactagaaagtggtattaaaaacatgatgcaatcttcattccttatttttcaaca |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12543 |
ttagtaatatttgtaccttcatcaaaattatattcactaacataaaactagaaagtggtattaaacacatgatgcaatcttcattccttatttttcaaca |
12642 |
T |
|
| Q |
301 |
attgatcttgtatgtttcacgtttgcagatgaaacttgtgcgccagattggtcccaaatgcaaccagctcaggccgaggttttaattttaaatcttcata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12643 |
attgatcttgtatgtttcacgtttgcagatgaaacttgtgcgccagattggtcccaaatgcaaccagctcaggccgaggttttaattttaaatcttcata |
12742 |
T |
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| Q |
401 |
c |
401 |
Q |
| |
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| |
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| T |
12743 |
c |
12743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 33975398 - 33975600
Alignment:
| Q |
1 |
cttggaatttaccaatgcaccaaagaaccaattgagaagagaaaaaggctgattattgacatgaatgaaaacaaacatgaacggtgtttaggggagaagc |
100 |
Q |
| |
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||||||||||||||| ||||||| |||||| ||||| | |||||||| |||||||||||||||||| | || ||| || | | | |||||||| |
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| T |
33975398 |
cttggaatttaccaaagcaccaaggaaccatttgagcaaagaaaaagactgattattgacatgaataacaataaaagtgggc------tcgcggagaagc |
33975491 |
T |
|
| Q |
101 |
atcaaagcctgatgactcgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcgctgcccgtatattgtcagtatcaactgg |
200 |
Q |
| |
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| ||| || ||||||| |||||||| ||||| || ||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |
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| T |
33975492 |
agcaaggcttgatgacccgtatattttcaaagtttatgagattgtgtgttaaacaaaatcctcaacagcttgctgcccgtatattgtcggtatcaactgg |
33975591 |
T |
|
| Q |
201 |
ttagtaata |
209 |
Q |
| |
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||||||||| |
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|
| T |
33975592 |
ttagtaata |
33975600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 33960098 - 33960300
Alignment:
| Q |
1 |
cttggaatttaccaatgcaccaaagaaccaattgagaagagaaaaaggctgattattgacatgaatgaaaacaaacatgaacggtgtttaggggagaagc |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||| | |||||||| |||||||||||||| ||| |||| ||| || | | | |||||||| |
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| T |
33960098 |
cttggaatttaccaaagcaccaaggaaccatttgagcaaagaaaaagactgattattgacattaataaaaataaaagtgggc------tcgcggagaagc |
33960191 |
T |
|
| Q |
101 |
atcaaagcctgatgactcgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcgctgcccgtatattgtcagtatcaactgg |
200 |
Q |
| |
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| ||| || ||||||| ||||||||||||| || ||| |||||||||||||| |||| ||||||||| |||||||||||||||| |||||| |||| |
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| T |
33960192 |
agcaaggcttgatgacctgtatattgtcaaagtttatgagattgtgtgttaaacggaatcctcaacagctcactgcccgtatattgtcggtatcagctgg |
33960291 |
T |
|
| Q |
201 |
ttagtaata |
209 |
Q |
| |
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||||||||| |
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|
| T |
33960292 |
ttagtaata |
33960300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 33952792 - 33952994
Alignment:
| Q |
1 |
cttggaatttaccaatgcaccaaagaaccaattgagaagagaaaaaggctgattattgacatgaatgaaaacaaacatgaacggtgtttaggggagaagc |
100 |
Q |
| |
|
||||||||||||||| || |||| |||||| ||||| | |||||||| |||||||||||||| ||| |||| ||| || | | | |||||||| |
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| T |
33952792 |
cttggaatttaccaaagcgccaaggaaccatttgagcaaagaaaaagactgattattgacattaataaaaataaaagtgggc------tcgcggagaagc |
33952885 |
T |
|
| Q |
101 |
atcaaagcctgatgactcgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcgctgcccgtatattgtcagtatcaactgg |
200 |
Q |
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| ||| || ||||||| ||||||||||||| || ||| |||||||||||||| |||| ||||||||| |||||||||||||||| |||||| |||| |
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| T |
33952886 |
agcaaggcttgatgacctgtatattgtcaaagtttatgagattgtgtgttaaacggaatcctcaacagctcactgcccgtatattgtcggtatcagctgg |
33952985 |
T |
|
| Q |
201 |
ttagtaata |
209 |
Q |
| |
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||||||||| |
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| T |
33952986 |
ttagtaata |
33952994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 33992311 - 33992513
Alignment:
| Q |
1 |
cttggaatttaccaatgcaccaaagaaccaattgagaagagaaaaaggctgattattgacatgaatgaaaacaaacatgaacggtgtttaggggagaagc |
100 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||||| | |||||||| |||||||||||||| ||| |||| | | ||| | | | |||||||| |
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| T |
33992311 |
cttggaatttaccaaagcaccaagcaaccatttgagcaaagaaaaagactgattattgacattaataaaaatagaagtgagc------tcgcggagaagc |
33992404 |
T |
|
| Q |
101 |
atcaaagcctgatgactcgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcgctgcccgtatattgtcagtatcaactgg |
200 |
Q |
| |
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| |||||| || |||| ||||||||||||||| | ||| ||||||| |||||||||||| |||||||| ||||| | |||||||| ||||||||||| |
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| T |
33992405 |
agcaaagcttgttgacccgtatattgtcaaaagtaatgagattgtgtattaaacaaaatccccaacagcttgctgctcacatattgtcggtatcaactgg |
33992504 |
T |
|
| Q |
201 |
ttagtaata |
209 |
Q |
| |
|
||||||||| |
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|
| T |
33992505 |
ttagtaata |
33992513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 401
Target Start/End: Original strand, 33960399 - 33960485
Alignment:
| Q |
315 |
tttcacgtttgcagatgaaacttgtgcgccagattggtcccaaatgcaaccagctcaggccgaggttttaattttaaatcttcatac |
401 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||||||| ||||||||||||||||||| ||||||| | ||||||||| ||||||| |
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|
| T |
33960399 |
tttcacatttgcagatgaaacatgtgcgttcgattggtctcaaatgcaaccagctcaggtcgaggttctgattttaaatattcatac |
33960485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 393
Target Start/End: Original strand, 33992590 - 33992691
Alignment:
| Q |
292 |
ttttcaacaattgatcttgtatgtttcacgtttgcagatgaaacttgtgcgccagattggtcccaaatgcaaccagctcaggccgaggttttaattttaa |
391 |
Q |
| |
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||||| ||||||||| ||| |||||| |||||||||||| | |||||| |||||||||| |||||||||||| |||||| ||||||||| ||||||| |
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| T |
33992590 |
ttttccacaattgattgtgttagtttcaaatttgcagatgaagcatgtgcgtcagattggtctcaaatgcaaccaactcaggtcgaggttttgattttaa |
33992689 |
T |
|
| Q |
392 |
at |
393 |
Q |
| |
|
|| |
|
|
| T |
33992690 |
at |
33992691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 314 - 401
Target Start/End: Original strand, 33953092 - 33953179
Alignment:
| Q |
314 |
gtttcacgtttgcagatgaaacttgtgcgccagattggtcccaaatgcaaccagctcaggccgaggttttaattttaaatcttcatac |
401 |
Q |
| |
|
||||||| |||||||||||||| |||||| |||||||| |||||| |||||||||||| |||||| | ||||||||||||||||| |
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|
| T |
33953092 |
gtttcacatttgcagatgaaacatgtgcgttcgattggtctcaaatggaaccagctcaggttgaggttctgattttaaatcttcatac |
33953179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 314 - 401
Target Start/End: Original strand, 33975693 - 33975780
Alignment:
| Q |
314 |
gtttcacgtttgcagatgaaacttgtgcgccagattggtcccaaatgcaaccagctcaggccgaggttttaattttaaatcttcatac |
401 |
Q |
| |
|
||||||| |||||||||||||| |||||| |||||||| || |||||||||||||||| ||||||| | ||||||||| ||||||| |
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|
| T |
33975693 |
gtttcacatttgcagatgaaacatgtgcgttggattggtctcatatgcaaccagctcaggtcgaggttctgattttaaatattcatac |
33975780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 398
Target Start/End: Original strand, 33942639 - 33942715
Alignment:
| Q |
322 |
tttgcagatgaaacttgtgcgccagattggtcccaaatgcaaccagctcaggccgaggttttaattttaaatcttca |
398 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| |||| ||||||| || |||||| | |||||||||||||| |
|
|
| T |
33942639 |
tttgcagatgaaacttgcgcttcagattggtcccaagtgcagccagctcttgctgaggttctgattttaaatcttca |
33942715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 8277964 - 8277762
Alignment:
| Q |
1 |
cttggaatttaccaatgcaccaaagaaccaattgagaagagaaaaaggctgattattgacatgaatgaaaacaaacatgaacggtgtttaggggagaagc |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||| | ||| ||| ||||||||||||| |||| |||| ||| || | | | |||||||| |
|
|
| T |
8277964 |
cttggaatttaccaaagcaccaaggaaccatttgagcaaagagaaaaactgattattgacaagaataaaaataaaagtgggc------tcgcggagaagc |
8277871 |
T |
|
| Q |
101 |
atcaaagcctgatgactcgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcgctgcccgtatattgtcagtatcaactgg |
200 |
Q |
| |
|
| ||| | ||||||| |||||||||||||| || ||| ||| |||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
8277870 |
agcaaggtttgatgacccgtatattgtcaaagtttatgagattttgtgttaaacaaaatcctcaacatttcgctgcccgtatattgtcggtatcaactgg |
8277771 |
T |
|
| Q |
201 |
ttagtaata |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
8277770 |
ttagtaata |
8277762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 314 - 401
Target Start/End: Complemental strand, 8277660 - 8277573
Alignment:
| Q |
314 |
gtttcacgtttgcagatgaaacttgtgcgccagattggtcccaaatgcaaccagctcaggccgaggttttaattttaaatcttcatac |
401 |
Q |
| |
|
||||||| |||||||||||||| | |||| |||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
8277660 |
gtttcacatttgcagatgaaacatatgcgttggattggtctcaaatacaaacagctcaggccgaggttctaattttaaatcttcatac |
8277573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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