View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_114 (Length: 390)
Name: NF0154_2D_low_114
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_114 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 139 - 369
Target Start/End: Complemental strand, 2133680 - 2133450
Alignment:
| Q |
139 |
aaatcaaatcacataactttcggaacgtatcacacaattctcgcttcaatggcttctcgcgtcggcatcactaatggcacctcttctcctttaaactctt |
238 |
Q |
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| T |
2133680 |
aaatcaaatcacataactttcggaacgtatcacacaattctcgcttcaatggcttctcgcgtcggcatcactaatggcacctcttctcctttaaactctt |
2133581 |
T |
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| Q |
239 |
cacgttttctatcaccttctaagaattcttcattccaaacccaaaacggtagtaattctaattctgcttctctcatgacgcaaaacaaaaccgttctagt |
338 |
Q |
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| T |
2133580 |
cacgttttctatcaccttctaagaattcttcattccaaacccaaaacggtagtaattctaattctgcttctctcatgacgcaaaacaaaaccgttctagt |
2133481 |
T |
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| Q |
339 |
taccggcggtgccggttacatcggtagccac |
369 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2133480 |
taccggcggtgccggttacatcggtagccac |
2133450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2133818 - 2133750
Alignment:
| Q |
1 |
ctaaaagtaaaccgaacacactggaaatccacgtggatgatctgttactctctcccccaatcaccataa |
69 |
Q |
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| T |
2133818 |
ctaaaagtaaaccgaacacactggaaatccacgtggatgatctgttactctctcccccaatcaccataa |
2133750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 369
Target Start/End: Complemental strand, 2129238 - 2129191
Alignment:
| Q |
322 |
aacaaaaccgttctagttaccggcggtgccggttacatcggtagccac |
369 |
Q |
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||||||||||| || |||||||| |||||||||||||| ||||||||| |
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| T |
2129238 |
aacaaaaccgtactcgttaccggtggtgccggttacattggtagccac |
2129191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 42028299 - 42028347
Alignment:
| Q |
321 |
aaacaaaaccgttctagttaccggcggtgccggttacatcggtagccac |
369 |
Q |
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|||||||||| |||| ||||||||||| |||||||||||||| |||||| |
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| T |
42028299 |
aaacaaaaccattctggttaccggcggagccggttacatcggcagccac |
42028347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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