View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_115 (Length: 389)
Name: NF0154_2D_low_115
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_115 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 21 - 389
Target Start/End: Original strand, 40921759 - 40922140
Alignment:
| Q |
21 |
atcaaagctatgattaggacatctttt-caacatagacttgtattgctcccatgtttcacagagagtttcatctgttccttgaaaaaacaatgtaatagt |
119 |
Q |
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| T |
40921759 |
atcaaagctatgattaggacatctttttcaacatagacttgtattgctcccatgtttcacagagagtttcatctgttccttgaaaaaacaatgtaatagt |
40921858 |
T |
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| Q |
120 |
tgtcttgacctccatgaatttgttacgttacgtggaaagaaccctttgaccattg------------taatttttcgctacaaaaggataaacttgtcta |
207 |
Q |
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| T |
40921859 |
tgtcttgacctccatgaatttgttacgttacgtggaaagaaccttttgaccattgccacacgatagttaatttttcgctacaaaaggataaacttgtcta |
40921958 |
T |
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| Q |
208 |
ataaaagaaaactggattttgaattttttctttacctaacctactaataaaagaaaattttctttttattgtttgaaatctattagtattttctagcaga |
307 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40921959 |
ataaaagaaaactggattttgaatttttcctttacctaacctactaataaaagaaaattttctttttattgtttgaaatctattagtattttctcgcaga |
40922058 |
T |
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| Q |
308 |
agaaaaactcaccttccgtattaatcatgagagaataaaaacaattttgtgtctaatggtattcctgacgtggatgtgtcat |
389 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40922059 |
agaaaaactcaccctccgtattaatcatgagagaataaaaacaattttgtgtctaatggtattcctgacgtggatgtgtcat |
40922140 |
T |
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