View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_117 (Length: 386)
Name: NF0154_2D_low_117
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_117 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 24 - 368
Target Start/End: Complemental strand, 13653014 - 13652670
Alignment:
| Q |
24 |
acaactgacttcaacggttgagattcgagccatgtcatgcaggttctatccactttgaagaaattggagttgaaagatgatgatgttgnnnnnnncatgg |
123 |
Q |
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| T |
13653014 |
acaactgacttcaacggttgagattcgagccatgtcatgcaggttctatccactttgaagaaattggagttgaaagatgatgatgttgtttttttcatgg |
13652915 |
T |
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| Q |
124 |
tattgaggtggtggtgaagtgggccaatagtgtagagtttggggaagtggagacgaatttgggagagaattggggactctagatcttcaaatgtgttgag |
223 |
Q |
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| T |
13652914 |
tattgaggtggtggtgaagtgggccaatagtgtagagtttggggaagtggagacgaatttgggagagaattggggactctaaatcttcaaatgtgttgag |
13652815 |
T |
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| Q |
224 |
tattactgcattgcctttaagtgatgcttgggttagttgtaaaactttgtctaaaacgttatggtccattttgtttgatgtaccgaaacgtggaagatct |
323 |
Q |
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| T |
13652814 |
tattactgcattgcctttaagtgatgcttgggttagttgtaaaactttgtctaaaatgatatggtccattttgtttgatgtaccgaaacgtggaagatct |
13652715 |
T |
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| Q |
324 |
ctacatcgaattatgttctccatgcctggcacgtttcttatgatg |
368 |
Q |
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| T |
13652714 |
ctacatcgaattatgttctccatgcctggcacgtttcttatgatg |
13652670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 123 - 367
Target Start/End: Complemental strand, 13647851 - 13647607
Alignment:
| Q |
123 |
gtattgaggtggtggtgaagtgggccaatagtgtagagtttggggaagtggagacgaatttgggagagaattggggactctagatcttcaaatgtgttga |
222 |
Q |
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| T |
13647851 |
gtattgaggaggtggtgaagagggcctatggtgtagagtttagggaagtgaatacgaatttgggagaggactgaggcttctagatcctcaaatgtgttga |
13647752 |
T |
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| Q |
223 |
gtattactgcattgcctttaagtgatgcttgggttagttgtaaaactttgtctaaaacgttatggtccattttgtttgatgtaccgaaacgtggaagatc |
322 |
Q |
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| T |
13647751 |
gtatgaatgcatttgctttaagtgattgtttggttcgaagtgcaacatcatctaaacggatatggtcttttttgttttctcgacaaaaacttggaagatc |
13647652 |
T |
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| Q |
323 |
tctacatcgaattatgttctccatgcctggcacgtttcttatgat |
367 |
Q |
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| T |
13647651 |
tctacagcgaagtatgttttccatgcctggaatgtttgttatgat |
13647607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 24 - 248
Target Start/End: Complemental strand, 13658487 - 13658254
Alignment:
| Q |
24 |
acaactgacttcaacggttgagattcgagccatgtcatgcaggttctatccactttgaagaaattg---------gagttgaaagatgatgatgttgnnn |
114 |
Q |
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| T |
13658487 |
acaaccgatttcaacggttgagattcaagccatgtcatgcaagttctatccacttcgaagaaattgctcttggaggaggaggacgatgacgatgatgttt |
13658388 |
T |
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| Q |
115 |
nnnncatggtattgaggtggtggtgaagtgggccaatagtgtagagtttggggaagtggagacgaatttgggagagaattggggactctagatcttcaaa |
214 |
Q |
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| T |
13658387 |
tttttgtggtgttgaggtggtggtgaagagggccaatggtgtagagtttaggggcatgaagacgaatttgagagagagctggggattctagattctcgaa |
13658288 |
T |
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| Q |
215 |
tgtgttgagtattactgcattgcctttaagtgat |
248 |
Q |
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| T |
13658287 |
cgtgttgagtattagtgcattgcctttaagtgat |
13658254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 368
Target Start/End: Complemental strand, 13658197 - 13658137
Alignment:
| Q |
308 |
gaaacgtggaagatctctacatcgaattatgttctccatgcctggcacgtttcttatgatg |
368 |
Q |
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| T |
13658197 |
gaaacttggaagatctctacatcgaagcaagttttccatgcctggcacgtttcttatgatg |
13658137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 13647957 - 13647894
Alignment:
| Q |
26 |
aactgacttcaacggttgagattcgagccatgtcatgcaggttctatccactttgaagaaattg |
89 |
Q |
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| T |
13647957 |
aactgatttcaatggttgagagtcaagccacgccatgcaggttctatccactttgaagaaattg |
13647894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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