View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_119 (Length: 382)
Name: NF0154_2D_low_119
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_119 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 3653440 - 3653106
Alignment:
| Q |
14 |
gtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttctctgctccat |
113 |
Q |
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| T |
3653440 |
gtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagtagtttcaagcacaccaagagaagattctgttctctgctccac |
3653341 |
T |
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| Q |
114 |
tgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattatattcatgtaaggctttgtctac |
213 |
Q |
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| T |
3653340 |
tgccgcttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaacttttgacgtgaaatgtcgttacattatattcatgtaaggttttgtttac |
3653241 |
T |
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| Q |
214 |
cctttgatttgtaatgtttgattgtattctaggagaatttgattggacttagattgtttggtaattggtagatctcatctgtgtgtctaattggcatatg |
313 |
Q |
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| T |
3653240 |
cctttgatttgtaatgtttgat--tattctaggagaatttgactggacttagattgtttggtaactggtagatctcatctgcgtgtctaattggcatttg |
3653143 |
T |
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| Q |
314 |
attc-ataaatggatttgttatgttccactttaattg |
349 |
Q |
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| T |
3653142 |
gttctataaatggatttgttatgttccacttcaattg |
3653106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 366
Target Start/End: Complemental strand, 3659691 - 3659355
Alignment:
| Q |
14 |
gtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttctctgctccat |
113 |
Q |
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| T |
3659691 |
gtgggggacagtggaggatcaacacgtagtagcgatgacggagatatagtg---------------gcacaccaagagaagattctgttctctgctccat |
3659607 |
T |
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| Q |
114 |
tgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattatattcatgtaaggctttgtctac |
213 |
Q |
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| T |
3659606 |
tgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcattacattatattcatgtaaggctttgtctac |
3659507 |
T |
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| Q |
214 |
cctttgatttgtaatgtttgattgtattctaggagaatttgattggacttagattgtttggtaattggtagatctcatctgtgtgtctaattggcatatg |
313 |
Q |
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| T |
3659506 |
cctttgatttgtaatgtttgattggattctaggacaatttgattggacttagattgtttggtaattggtagatctcatctgtgtgtctaattggcatttg |
3659407 |
T |
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| Q |
314 |
attcataaatggatttgttatgttccactttaattggcatttagataattgtg |
366 |
Q |
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| T |
3659406 |
gtt-ataaatggatttgttatgttccacttcaattggaatttagataagtgtg |
3659355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 3649322 - 3649181
Alignment:
| Q |
24 |
gtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttctctgctccattgccacttaa |
123 |
Q |
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||||||||||||| |||||||| | | | |||||| ||||||||| |||||||| | ||| || |||||| ||||| |||| | || |||||||||||| |
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| T |
3649322 |
gtggaggatcaacgcgtagtagtggttatggagattgagtgaaagatcagtttcaggtacatcatgagaagcttctgctctcagttctattgccacttaa |
3649223 |
T |
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| Q |
124 |
aatggaaagcagaactgatttgaagagtaaaggcgtgaaaat |
165 |
Q |
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| T |
3649222 |
gatggaaagcagaactgatttgaagagtaaaagtgtgaaaat |
3649181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 262
Target Start/End: Complemental strand, 3657443 - 3657199
Alignment:
| Q |
14 |
gtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttctctgctccat |
113 |
Q |
| |
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||||||||| ||| ||||||||| ||||| || | | | |||||| | |||||||||||||||| | ||| || |||||| |||||||||| ||| ||| |
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| T |
3657443 |
gtggaggacggtgaaggatcaacgcgtagcagtggttatggagattgactgaaagagcagtttcaggtacatcatgagaagcttctgttctcagctgcat |
3657344 |
T |
|
| Q |
114 |
tgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattatattcatgtaaggctttgt---c |
210 |
Q |
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| T |
3657343 |
tgccgcttaaaatggagagca----agacttgaagagtaatggtgtgaacaatttgtcgcgaaatgtcataaaatta---tcatttaaggctttgtttgt |
3657251 |
T |
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| Q |
211 |
taccctttgatttgtaatgtttgattgtattctaggagaatttgattggact |
262 |
Q |
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| | ||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
3657250 |
ttacatttgatttgtaatgtttgactgtattctaggagaacttgattggact |
3657199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 36164634 - 36164576
Alignment:
| Q |
107 |
gctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaat |
165 |
Q |
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| T |
36164634 |
gctccattgccgcttaagatggaaagcagaactgatttgaagagtaaaagtgtgaaaat |
36164576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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