View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_120 (Length: 379)
Name: NF0154_2D_low_120
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_120 |
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Alignment Details
Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 43329624 - 43329520
Alignment:
| Q |
10 |
ataatactaaatgaaggtggaaggtcctcttttgatatatgcatgaaaactaaatctcattggtgaatcannnnnnnnccattaatatttgtttgtactc |
109 |
Q |
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| T |
43329624 |
ataatactaaatgaaggtggaaggtcctcttttgatatatgcatgaaaactaaatctcattggtgaatcattttttttccattaatatttgtttgtactc |
43329525 |
T |
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| Q |
110 |
actca |
114 |
Q |
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||||| |
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| T |
43329524 |
actca |
43329520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 43329449 - 43329376
Alignment:
| Q |
185 |
atattataccgacatggctccaatctaatggggtttaaccatttctgcttctacaactcaatctaacatgttgg |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43329449 |
atattataccgacatggctccaatctaatggggtttaaccatttctgcttctacaactcaatctaacatgttgg |
43329376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 43329344 - 43329293
Alignment:
| Q |
290 |
aagttaaagggtcttgtaaaaatttgatttttatgttatttggaaatttatg |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43329344 |
aagttaaagggtcttgtaaaaatttgatttttatgttatttggaaatttatg |
43329293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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