View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_123 (Length: 375)
Name: NF0154_2D_low_123
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_123 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 44308824 - 44309176
Alignment:
| Q |
1 |
agcgattgagattaattatgcgaaagttttgatttctcatttaaaaattgtgaattgcataagcctatgcttttagaattctttggtatatggttagttt |
100 |
Q |
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| T |
44308824 |
agcgattgagattaattatgcgaaagttttgatttctcatttaaaaattgtgaattgcataagcctatgcttttagaattctttggtatatggttagttt |
44308923 |
T |
|
| Q |
101 |
gcttgacagactgatgaaaattgatgccaatataaaacgtgctctttaattcttattttctattcaactacagaactatcaaatattaagtgtacacatc |
200 |
Q |
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| T |
44308924 |
gcttgacaggctgatgaaaattgatgccaatataaaacttgctctttaattcttattttctattcaactacagaactatcaaatattaagtgtacacatc |
44309023 |
T |
|
| Q |
201 |
aagtctaattatcttaagatcatcaaacaaaaacttgattttataaactgtcttcatgnnnnnnnnnnnnnnnntcattattgagagtcattacttgtta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44309024 |
aagtctaattatcttaagatcatcaaacaaaaacttgattttataaactgtcttcatgaaaacaaaaaacaaaatcattattgagagtcattacttgtta |
44309123 |
T |
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| Q |
301 |
ttattttcgtgaatatatgtttaccctaaacagagaaattgtaccactctgca |
353 |
Q |
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| T |
44309124 |
ttattttcgtgaatatatgtttaccctaaacagagaaattgtaccaatctgca |
44309176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 44458321 - 44458130
Alignment:
| Q |
1 |
agcgattgagattaattatgcgaaagttttgatttctcatttaaaaattgtgaattgcataagcctatgcttttagaattctttggtatatggttagttt |
100 |
Q |
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| T |
44458321 |
agcgattgagattaattatgcgaaagttttgatttctcatttaaaaattgtgaattgcataagcctatgcttttagaattctttggtatatggttagttt |
44458222 |
T |
|
| Q |
101 |
gcttgacagactgatgaaaattgatgccaatat-aaaacgtgctctttaattcttattttctattcaactacagaactatcaaatattaagt |
191 |
Q |
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| T |
44458221 |
gcttgacaggctgatgagaattgatgccaatataaaaacttgctctttaattctcattttctattcaactgcagaactatcaaatatgaagt |
44458130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 44465854 - 44465663
Alignment:
| Q |
1 |
agcgattgagattaattatgcgaaagttttgatttctcatttaaaaattgtgaattgcataagcctatgcttttagaattctttggtatatggttagttt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44465854 |
agcgattgagattaattatgcgaaagttttgatttctcatttaaaaattgtgaattgcataagcctatgcttttagaattctttggtatatggttagttt |
44465755 |
T |
|
| Q |
101 |
gcttgacagactgatgaaaattgatgccaatat-aaaacgtgctctttaattcttattttctattcaactacagaactatcaaatattaagt |
191 |
Q |
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||||||||| ||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||||| |||||||||||||||| |||| |
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| T |
44465754 |
gcttgacaggctgatgagaattgatgccaatataaaaacttgctctttaattctcattttctattcaactgcagaactatcaaatatgaagt |
44465663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 178
Target Start/End: Complemental strand, 27466907 - 27466739
Alignment:
| Q |
15 |
attatgcgaaagttttgatttctcatttaaaaattgtgaattgcataagcctatgcttttagaattctttggtatatggt------tagtttgcttgaca |
108 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||| |||||||| ||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
27466907 |
attatgcgaaagttttgatttctcatgtaaaatttgtgaaatgcataagt-tatgcttctagaattctttggtatatggtaatggttagtttgcttgacg |
27466809 |
T |
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| Q |
109 |
gactgatgaaaattgatgccaatataaaacgtgctctttaattcttattttctattcaactacagaacta |
178 |
Q |
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| |||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |
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| T |
27466808 |
ggttgatgaaaattgatgccaatataaaatgtgctctttaattgtcattttctattcaactacagaacta |
27466739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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