View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_128 (Length: 373)
Name: NF0154_2D_low_128
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_128 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 39813802 - 39813442
Alignment:
| Q |
1 |
agattagaacttggacattttggaattgatgttgtgaatgttgtccctggagctgtgaagtcaaatatgggaaattccggcatagccatctacgaccgca |
100 |
Q |
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| T |
39813802 |
agattagaacttggacattttggaattgatgttgtgaatgttgtccctggagctgtgaagtcaaatatgggaaattccggcatagccatctacgaccgca |
39813703 |
T |
|
| Q |
101 |
tgccagagtggaaattgttcaaaccatttgaagcagtaatccgagagagagctctactgtctcggaagttaagacaaacccctacagacgagtttgctaa |
200 |
Q |
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| T |
39813702 |
tgccagagtggaaattgttcaaaccatttgaagcagtaatccgagagagagctctactgtctcggaagttaagacaaacccctacagacgagtttgctaa |
39813603 |
T |
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| Q |
201 |
acacaccatagctgctatcctaaggaagaaaccacctgcatggttctcttatggcaattattctactgtcatggctattatgtactatttacctctctgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39813602 |
acacaccatagctgctatcctaaggaagaaaccacctgcatggttctcttatggcaattattctactgtcatggctattatgtactatttacctctctgt |
39813503 |
T |
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| Q |
301 |
gttagagactttcttttgaagaaagcaatgaaataatgatctacactcgtgatgtccatct |
361 |
Q |
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| T |
39813502 |
gttagagactttcttttgaagaaagcaatgaaataatgatctacactcgtgctgtccatct |
39813442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 39816680 - 39816335
Alignment:
| Q |
1 |
agattagaacttggacattttggaattgatgttgtgaatgttgtccctggagctgtgaagtcaaatatgggaaattccggcatagccatctacgaccgca |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| |
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| T |
39816680 |
agattggaacttggacattttggaattgatgttgtgaatgttgtccctggagctgtgaagtcaaatattggaaattccggcatagctatctacaaccgca |
39816581 |
T |
|
| Q |
101 |
tgccagagtggaaattgttcaaaccatttgaagcagtaatccgagagagagctctactgtctcggaagttaagacaaacccctacagacgagtttgctaa |
200 |
Q |
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|||| ||||||||| | ||||||||||||||||||| ||||||||||||||||||| |||||| | ||||||| |||||||||||| |||||||||| |
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| T |
39816580 |
tgccggagtggaaactattcaaaccatttgaagcagcaatccgagagagagctctattgtctcaggggttaagatcaacccctacagatgagtttgctag |
39816481 |
T |
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| Q |
201 |
acacaccatagctgctatcctaaggaagaaaccacctgcatggttctcttatggcaattattctactgtcatggctattatgtactatttacctctctgt |
300 |
Q |
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||||||| |||||||| |||| |||||||||||||||||||||||||| |||||| ||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
39816480 |
acacaccgtagctgctgtccttaggaagaaaccacctgcatggttctcatatggccgttattctactgccatggctgttatgtaccatttacctctctgt |
39816381 |
T |
|
| Q |
301 |
gttagagactttcttttgaagaaagcaatgaaataatgatctacac |
346 |
Q |
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| T |
39816380 |
gttagagactttctttttaagaaagcaatgaaatgttgatctacac |
39816335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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