View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_130 (Length: 367)
Name: NF0154_2D_low_130
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_130 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: scaffold0391 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 72 - 358
Target Start/End: Original strand, 6997 - 7283
Alignment:
| Q |
72 |
taagtttaatacgtttattgtatactagtcaatacacatggtcatgcagtgcaacgaattttctttcgtaagaaccatcattttccattatggaaacctg |
171 |
Q |
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| T |
6997 |
taagtttaatacgtttattgtatactagtcaatacacatggtcatgcagtgcaacgaattttctttcgtaagaaccatcattttccattatgaaaacctg |
7096 |
T |
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| Q |
172 |
cgcaaagagttgataacaaaattgctacgttatttctttgtgtggataatatataacctacgtttcgcgcttccattctttcaattctattaataatcct |
271 |
Q |
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| T |
7097 |
cgcaaagagttgataacaaaattgctacgttatttctttgtgtggataatatataacctacgtttcgcgcttccattctttcaattctattaataatcct |
7196 |
T |
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| Q |
272 |
cctacaacagtaattgtaaggtgaatatttttagaataatttagagatttnnnnnnnttactttagcaagaagatagtgtgtttcat |
358 |
Q |
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| T |
7197 |
cctacaacagtaattgtaaggtgaatatttttagaataatttagagatttaaaaaaattactttagcaagaagatagtgtgtttcat |
7283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 189 - 358
Target Start/End: Original strand, 34116596 - 34116764
Alignment:
| Q |
189 |
aaaattgctacgttatttctttgtgtggataa-tatata-acctacgtttcgcgcttccattctttcaattctattaataatcctcctacaacagtaatt |
286 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||| |||||| |||||||||| ||||| |
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| T |
34116596 |
aaaattgctacgttatttctttgtgtggataaatatatatacctatgtttcgcgcttccattctttcaattcta---ataatcttcctacaacaataatt |
34116692 |
T |
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| Q |
287 |
gtaaggtgaatatttttagaataatttagagatttnnnnnnnttactttagcaagaagatagtgtgtttcat |
358 |
Q |
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| T |
34116693 |
gtaaggtgaatattttgagaatattttagtgatttaaaaaaattactttagcaagaagattgtgtgtttcat |
34116764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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