View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_low_133 (Length: 365)
Name: NF0154_2D_low_133
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_133 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 1963119 - 1963414
Alignment:
| Q |
17 |
ataaaccaaataattaggtcaataacatgtgcataagggtgggttgttggaactccttccttaatcaaagtccaagctgattgcaaatctgattcacatt |
116 |
Q |
| |
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|||||||||||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1963119 |
ataaaccaaataatgaggccaataacatgtgtataagggtggattgttggaactccttccttaatcaaagtccaagctgattgcaaatctgattcacatt |
1963218 |
T |
|
| Q |
117 |
caacatgttgaaagccattattcaaagctatgcattcatattggtagtaataccacaattgctggtgaaacacaataaccaattaccattagtgtctcta |
216 |
Q |
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|
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1963219 |
caacatgt-gaaagccattattcaaagttatgcattcatattggtagtaataccacaattgctggcgaaacacaataaccaattaccattagtgtctcta |
1963317 |
T |
|
| Q |
217 |
attaaacctctgaacccatatcgacccggattaccaatagagctaccatcaacatttaatttaacagttgcacctattagagatttccaagctacca |
313 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1963318 |
attaaacctctgaacccatatcaacccggattaccaatagagctaccatcaacatttaatttaacaattgcacctattagagatttccaagctacca |
1963414 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 142 - 313
Target Start/End: Original strand, 22081755 - 22081926
Alignment:
| Q |
142 |
agctatgcattcatattggtagtaataccacaattgctggtgaaacacaataaccaattaccattagtgtctctaattaaacctctgaacccatatcgac |
241 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| || | ||||| ||||||||||| |||| || |||||||||| ||||||| |||||| | |||| |
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| T |
22081755 |
agctctgcattcatattggtagtaataccacaactggcagagaaactgaataaccaattgccatcagcgtctctaatttaacctctaaacccagagcgac |
22081854 |
T |
|
| Q |
242 |
ccggattaccaatagagctaccatcaacatttaatttaacagttgcacctattagagatttccaagctacca |
313 |
Q |
| |
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| ||||||||| |||||||||||| |||||||||| ||||| | |||||||| ||| |||||||||||||| |
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| T |
22081855 |
caagattaccaagagagctaccatccacatttaattcaacagctacacctattggaggtttccaagctacca |
22081926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 22081614 - 22081721
Alignment:
| Q |
32 |
aggtcaataacatgtgcataagggtgggttgttggaactccttccttaatcaaagtccaagctgattgcaaatctgattcacattcaacatgttgaaagc |
131 |
Q |
| |
|
|||||||||||| ||||||| | ||| ||||| |||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| |||||| |
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| T |
22081614 |
aggtcaataacaggtgcatatgagtgagttgtcggaactccttccttaatcaaagtcaaagctgattgacaatcagattcacattcaacatgtcgaaagc |
22081713 |
T |
|
| Q |
132 |
cattattc |
139 |
Q |
| |
|
||||||| |
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|
| T |
22081714 |
tattattc |
22081721 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 4269929 - 4270040
Alignment:
| Q |
27 |
taattaggtcaataacatgtgcataagggtgggttgttggaactccttccttaatcaaagtccaagctgattgcaaatctgattcacattcaacatgttg |
126 |
Q |
| |
|
|||| |||||||||||| |||||| ||||| ||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| | |
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| T |
4269929 |
taatgaggtcaataacaaatgcataggggtgagttgtcggaactccttccttaatcaaagttaaagctgattggcaatctgattcacattcaatatgtcg |
4270028 |
T |
|
| Q |
127 |
aaagccattatt |
138 |
Q |
| |
|
||| |||||||| |
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|
| T |
4270029 |
aaaaccattatt |
4270040 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 1583060 - 1582996
Alignment:
| Q |
75 |
ccttaatcaaagtccaagctgattgcaaatctgattcacattcaacatgttgaaagccattattc |
139 |
Q |
| |
|
|||||||||||||| |||| || || ||||||||| ||||||||||||| |||||||||||||| |
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| T |
1583060 |
ccttaatcaaagtcaaagccgactgataatctgatttacattcaacatgtcgaaagccattattc |
1582996 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 313
Target Start/End: Complemental strand, 11324592 - 11324440
Alignment:
| Q |
161 |
tagtaataccacaattgctggtgaaacacaataaccaattaccattagtgtctctaattaaacctctgaacccatatcgacccggattaccaatagagct |
260 |
Q |
| |
|
|||||||||||||| |||| | ||||| |||||||||||||| ||||||||| |||||||| ||| |||||| | ||| |||||||||||| | | || |
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|
| T |
11324592 |
tagtaataccacaactgctagagaaaccgaataaccaattaccgttagtgtctttaattaaatatctaaacccagagcgatccggattaccaagataact |
11324493 |
T |
|
| Q |
261 |
accatcaacatttaatttaacagttgcacctattagagatttccaagctacca |
313 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | ||| |||||||||||||| |
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| T |
11324492 |
accatcaacatttaatttaatagttgcacctaatggaggtttccaagctacca |
11324440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 11324703 - 11324631
Alignment:
| Q |
67 |
aactccttccttaatcaaagtccaagctgattgcaaatctgattcacattcaacatgttgaaagccattattc |
139 |
Q |
| |
|
|||||||||||||||||||||| |||| || | ||||| ||||||||| || |||| |||||||||||||| |
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|
| T |
11324703 |
aactccttccttaatcaaagtcaaagccgaataacaatctaattcacatttaaaatgtcgaaagccattattc |
11324631 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 39334711 - 39334824
Alignment:
| Q |
27 |
taattaggtcaataacatgtgcataagggtgggttgttggaactccttcctt-aatcaaagtccaagctgattgcaaatctgattcacattcaacatgtt |
125 |
Q |
| |
|
|||| |||||||||||| |||||||||| || | || |||||||||||||| |||||||||| ||| |||||| ||| ||||||||| ||||||||| |
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|
| T |
39334711 |
taatgaggtcaataacaagtgcataaggatgagatgccggaactccttccttaaatcaaagtcaaagttgattggtaatttgattcacactcaacatgtc |
39334810 |
T |
|
| Q |
126 |
gaaagccattattc |
139 |
Q |
| |
|
||||| |||||||| |
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|
| T |
39334811 |
gaaagtcattattc |
39334824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 313
Target Start/End: Original strand, 39334905 - 39335020
Alignment:
| Q |
197 |
aattaccattagtgtctctaattaaacctctgaacccatatcgacccggattaccaatagagctaccatcaacatttaatttaacagttgcacctattag |
296 |
Q |
| |
|
||||||||||||||| ||||||||| ||| |||||| ||| ||| | ||||| ||| ||||||||| |||| |||||||||||| ||||||| || | | |
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|
| T |
39334905 |
aattaccattagtgtatctaattaagcctttgaacc-atagcgatctagattatcaagagagctaccttcaatatttaatttaaccgttgcacttacttg |
39335003 |
T |
|
| Q |
297 |
agatttccaagctacca |
313 |
Q |
| |
|
|| |||||||| ||||| |
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|
| T |
39335004 |
aggtttccaagatacca |
39335020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 51272911 - 51272969
Alignment:
| Q |
54 |
ggtgggttgttggaactccttccttaatcaaagtccaagctgattgcaaatctgattca |
112 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||| |||| ||||| ||||||||||| |
|
|
| T |
51272911 |
ggtgagttgttggaactcattccttgatcaaagtcaaagccgattgacaatctgattca |
51272969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 19224264 - 19224188
Alignment:
| Q |
149 |
cattcatattggtagtaataccacaattgctggtgaaacacaataaccaattaccattagtgtctctaattaaacct |
225 |
Q |
| |
|
||||||||||| |||||||| || ||||||||| ||||| ||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
19224264 |
cattcatattgatagtaatatcataattgctggggaaacccaataaccaattaccatcaatgtctcaaattaaacct |
19224188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 139
Target Start/End: Complemental strand, 19224412 - 19224305
Alignment:
| Q |
32 |
aggtcaataacatgtgcataagggtgggttgttggaactccttccttaatcaaagtccaagctgattgcaaatctgattcacattcaacatgttgaaagc |
131 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||| | ||||| ||||||||||||| | |||| ||| |||||||||||||||||||| || ||| | |
|
|
| T |
19224412 |
aggtcaataacaggtgcataagagtgagttgtcgaaactctttccttaatcaaaaccaaagccaattaacaatctgattcacattcaacaggtcaaaatc |
19224313 |
T |
|
| Q |
132 |
cattattc |
139 |
Q |
| |
|
|||||||| |
|
|
| T |
19224312 |
cattattc |
19224305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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