View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_135 (Length: 363)
Name: NF0154_2D_low_135
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_135 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 51461008 - 51461355
Alignment:
| Q |
1 |
attgctaaacatttctatttggccgacaatagagtttttactctatcttgtagttgtaactgcttgtaggtagaaatgagacggataaatatacacatag |
100 |
Q |
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| T |
51461008 |
attgctaaacatttctatttggccgacaatagagtttttactctatcttgtagttgaaactgcttgtatgtagaaatgagatggatgaatatacacatag |
51461107 |
T |
|
| Q |
101 |
ctattcaaccaaaggtttcatggggtggtccaagttcaagttttgtcgggattgtgcagatttaagtgtactgacatatgctcttctacaagagacaagt |
200 |
Q |
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| T |
51461108 |
ctattcaaccaaaagtttcattgggtggtccaagttcaagttttgccgggattgtgcagatt-aagtgtactgacatatgctcttctacaagagtcaagt |
51461206 |
T |
|
| Q |
201 |
tgaagtttctttattaaatgcatcatttactatggtttacactgtgtttctgacatttgcattggcatacttattgttggaaaggcaatattgttgcgta |
300 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |||||||||| |||| |
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| T |
51461207 |
tgaagtttctttattaaatgcatcatttactttggtttacaatgtgtttctgacatttgcattgacatacttattgctggaaagtcaatattgttccgta |
51461306 |
T |
|
| Q |
301 |
ggatgatgttcgttttaagtgtacatgatgctctaattctctttgatgt |
349 |
Q |
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||||| |||||||||||||||||||||||||| | |||||||||||||| |
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| T |
51461307 |
ggatggtgttcgttttaagtgtacatgatgctttgattctctttgatgt |
51461355 |
T |
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