View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_138 (Length: 359)
Name: NF0154_2D_low_138
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_138 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 38280773 - 38281116
Alignment:
| Q |
1 |
ttcctgccaaatgcaaatgtgcgaccatgtcttataaaaagtcagtttcaacaaagttttcagtggagaaaattagggtttatggttgaaatctgatttc |
100 |
Q |
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| T |
38280773 |
ttcctgccaaatgcaaatgtgcgaccatatct-ataaaaagtcagtttcaacaaagttttcagtggagaaaattagggtttatggttgaaatttgatttc |
38280871 |
T |
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| Q |
101 |
ttgaaaccttttggtttctctttgtgaagaactcattgacaataaattagagtgataactatcctccagatgtaggtcaaatttgggccgaactagatga |
200 |
Q |
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| T |
38280872 |
ttgtaactttttggtttctctttgtgaagaactcattgacaataaattagagtgataactatcctccagatgtaggtcaaatttgggccgaactaggtga |
38280971 |
T |
|
| Q |
201 |
acaagtatcattgtgttttcttagttttgttttattattaatgcttcaagtgtcacaagaccgatcagttaaggaaggattgtctcgagttagggaacaa |
300 |
Q |
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| T |
38280972 |
acaagtatcattgtgttttcttagtcttgttttattattaatgcttcaagtgtcacaagaccgatcagttaaggaaggattgtctcgagttaggggacaa |
38281071 |
T |
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| Q |
301 |
tgataactttgtgcaatttgcagctgccctagaggataatgatgt |
345 |
Q |
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| T |
38281072 |
tgataactttgtgcaatttgcagctgccccagaggattatgatgt |
38281116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 16135493 - 16135599
Alignment:
| Q |
105 |
aaccttttggtttctctttgtgaagaactcattgacaataaattagagtgataactatcctccagatgtaggtcaaatttgggccgaactagatgaacaa |
204 |
Q |
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| T |
16135493 |
aaccttttggtttctctttgtaaataactcattcataatgaattggagagatcactctcctctagacgtaggtcaaatttaggccaaactaggtgaacaa |
16135592 |
T |
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| Q |
205 |
gtatcat |
211 |
Q |
| |
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|||||| |
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| T |
16135593 |
atatcat |
16135599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 204
Target Start/End: Original strand, 16137067 - 16137184
Alignment:
| Q |
87 |
tgaaatctgatttcttgaaaccttttggtttctctttgtgaagaactcattgacaataaattagagtgataactatcctccagatgtaggtcaaatttgg |
186 |
Q |
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|||||||| |||||||| |||||||||||||||||||| || |||||||||| | | |||| ||| ||| | |||| ||| ||||||||| ||||| |
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| T |
16137067 |
tgaaatctaatttcttgtaaccttttggtttctctttgaaaacaactcattgatagtgaatttgagagatttatctcctatagacgtaggtcaattttgg |
16137166 |
T |
|
| Q |
187 |
gccgaactagatgaacaa |
204 |
Q |
| |
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|| |||||||||||||| |
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| T |
16137167 |
accaaactagatgaacaa |
16137184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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