View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0154_2D_low_14 (Length: 842)
Name: NF0154_2D_low_14
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0154_2D_low_14
Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 391 - 830
Target Start/End: Original strand, 5242523 - 5242955
Alignment:
Q
391
attttctctacgaactttaatcaaatcatgcatcaaacacaaagtaaaaagtgcaattgcattgtgagagaaccgcaaccatgaaaattcactaagctct
490
Q
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
5242523
attttctctac-aactttaatcaaatcatgcatcaaaaacaaagtaaaaagtgcaattgcattgtgagagaaccgcaaccatgaaaattcactaagctct
5242621
T
Q
491
agacctcgtacgtgtcattgacatagttccaaaaacatgcgtgtcttgtttctaaattagccgcgtctgtaatccacgtgtcagttcataaccactctta
590
Q
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
5242622
agacctcgtacgtgtcattgatatagttccaaaaacatgcgtgtcttgtttctaaattagccgcgtctgtaatccacgtgtcagttcataaccactctta
5242721
T
Q
591
ctgttccttttttaccttgttgtcatcttctcaaatatttaccactctaaaaatattatcatgtcatgcaacattatttatttaatttatttgtcacatt
690
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
5242722
ctgttccttttttaccttgttgtcatcttctcaaatatttaccactctaaaaatattatcatgtcatgcaacattatttatttaatttatttgtcacatt
5242821
T
Q
691
ttgatacatatctatataaaccccttaaccatttgttttaaccacatagcttcgagtacttactgatcaagaaagtgacactacatagcataatcaacca
790
Q
||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
T
5242822
ttg----atatctatataaaccccttaaccatttattttaaccac--agcttcgagtacttactgatcaagaaagtgacactacatagcataatcaacca
5242915
T
Q
791
atccaaatttgagaaaaaacaatggcatctaaacaccaaa
830
Q
||||||||||||||||||||||||||||||||||| ||||
T
5242916
atccaaatttgagaaaaaacaatggcatctaaacaacaaa
5242955
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 25 - 359
Target Start/End: Original strand, 5242193 - 5242527
Alignment:
Q
25
tatgtaacattgggctacttaaatgttgttccatta-tattatataatgatatgatatggtattatggttaactaaaccctacagcttagacgacagaca
123
Q
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
T
5242193
tatgtaacattgggctacttaaatgttgttccattagtattatat--------gatatggtattatggttaactaaaccctacagcttagacgacaaaca
5242284
T
Q
124
gagtgattatatcaatctgtcaaatccttcaacggttaatttcaaaatatatgtattctaaatcatctattcaacttaaacaatgttcaatgatttagaa
223
Q
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
5242285
aagtgattatatcaatct---------ttcaacggttaatttcaaaatatatgtattctaaatcatctattcaacttaaacaatgttcaatgatttagaa
5242375
T
Q
224
tattacacatattttggtatcatctcttaactaaatattacaaaaacaacttgtgaactattatccttgatttgtaacctctatta--------------
309
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
5242376
tattacacatattttggtatcatctcttaactaaatattacaaaaacaacttgtgaactattatccttgatttgtaacctctattaaacatgtttaaatg
5242475
T
Q
310
--tccacaatcaaaccattaaattacaacagctgaaacatgttaaatatttt
359
Q
|||||||| |||||||||||||||||||||||||||||||||||||||||
T
5242476
tctccacaatgaaaccattaaattacaacagctgaaacatgttaaatatttt
5242527
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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